Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 3.2e-130 468.4 232 100.0
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 3.1e-72 275.8 241 60.2
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 2.6e-47 193.0 247 48.2
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.7e-46 190.3 248 46.8
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 1.7e-46 190.3 245 47.3
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.1e-45 187.6 246 45.5
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 1.1e-45 187.6 244 45.9
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 1.9e-45 186.8 252 49.6
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 4.6e-44 182.2 209 51.2
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 1.8e-43 180.3 247 46.6
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 1.5e-42 177.2 249 45.4
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 1.5e-42 177.2 245 44.1
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 9.6e-42 174.5 242 45.5
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 1.3e-41 174.1 237 44.7
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 1.6e-41 173.7 249 45.8
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 2.1e-41 173.3 242 45.0
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 6.2e-41 171.8 248 44.4
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 6.2e-41 171.8 246 46.3
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 8.1e-41 171.4 247 46.6
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 2.0e-39 166.8 190 51.6
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 5.8e-39 165.2 241 44.0
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 7.6e-39 164.9 205 47.3
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 9.9e-39 164.5 241 43.6
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 1.7e-38 163.7 244 45.1
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 2.2e-38 163.3 293 38.9
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 2.9e-38 162.9 243 44.4
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 6.4e-38 161.8 272 41.9
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 6.4e-38 161.8 240 42.5
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 2.4e-37 159.8 222 44.6
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 7.9e-36 154.8 238 42.0
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 1.0e-35 154.5 224 44.6
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 1.0e-35 154.5 257 42.4
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 1.3e-35 154.1 240 42.5
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 2.3e-35 153.3 228 41.7
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 2.3e-35 153.3 250 40.0
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 3.9e-35 152.5 257 43.2
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 3.9e-35 152.5 249 40.2
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 8.7e-35 151.4 251 41.4
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 8.7e-35 151.4 248 43.5
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 1.1e-34 151.0 252 43.3
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 1.5e-34 150.6 259 42.5
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 1.5e-34 150.6 247 42.9
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 1.5e-34 150.6 240 40.0
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 3.3e-34 149.4 258 42.6
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 3.3e-34 149.4 254 38.6
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 7.4e-34 148.3 246 40.2
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 2.1e-33 146.7 217 45.2
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 2.1e-33 146.7 217 45.2
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 2.1e-33 146.7 244 39.8
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 3.7e-33 146.0 243 39.1
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 3.7e-33 146.0 166 47.6
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 8.2e-33 144.8 259 39.0
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 8.2e-33 144.8 149 52.3
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 1.8e-32 143.7 249 41.0
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 1.8e-32 143.7 244 39.3
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 3.1e-32 142.9 203 43.8
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 4.0e-32 142.5 238 39.5
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 5.3e-32 142.1 247 38.5
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 6.9e-32 141.7 249 41.0
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 9.0e-32 141.4 251 41.8
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 9.0e-32 141.4 151 53.0
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 1.5e-31 140.6 206 40.3
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 1.3e-30 137.5 204 42.6
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 1.3e-30 137.5 126 56.3
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 1.7e-30 137.1 243 40.3
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 2.9e-30 136.3 248 39.5
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 2.9e-30 136.3 246 41.1
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 4.9e-30 135.6 252 38.5
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 1.4e-29 134.0 214 43.5
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 3.2e-29 132.9 242 36.8
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 4.2e-29 132.5 239 39.3
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 5.5e-29 132.1 250 39.6
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 9.3e-29 131.3 255 38.4
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 1.2e-28 131.0 214 43.0
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 2.1e-28 130.2 238 40.8
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 6.0e-28 128.6 237 34.6
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 4.3e-26 122.5 238 37.0
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 1.1e-24 117.9 217 35.9
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 2.0e-23 113.6 151 43.0
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 6.5e-22 108.6 217 34.6
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 7.2e-21 105.1 114 51.8
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 1.6e-20 104.0 184 40.8
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 2.3e-19 100.1 80 61.2
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 9.7e-18 94.7 155 40.0
unitig_0.g273 Utricularia gibba HOM05D063345 ORTHO05D051505 2.8e-17 93.2 101 49.5
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 4.5e-15 85.9 123 41.5
AUR62008743 Chenopodium quinoa HOM05D007766 ORTHO05D009733 2.5e-13 80.1 106 43.4
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 5.7e-10 68.9 97 47.4
Sc17g0002980 Simmondsia chinensis HOM05D007766 ORTHO05D009733 1.5e-07 60.8 48 62.5


User provided reference genes

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