Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 0.0e+00 2165.2 1254 100.0
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 0.0e+00 1161.0 948 68.2
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 4.0e-251 872.5 1278 49.9
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 7.6e-210 735.3 1371 42.2
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 2.1e-138 498.0 760 45.0
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 8.4e-124 449.5 979 35.8
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 2.1e-122 444.9 1048 34.5
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 3.0e-113 414.5 845 36.0
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 1.1e-112 412.5 1324 32.9
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 2.4e-107 394.8 1257 35.2
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 8.7e-105 386.3 1119 31.2
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.5e-104 384.8 1006 32.6
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 3.3e-104 384.4 1079 32.3
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 7.4e-104 383.3 1085 31.6
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 2.1e-103 381.7 1108 31.7
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 8.4e-100 369.8 1078 31.4
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 8.4e-100 369.8 1105 30.5
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 6.0e-98 363.6 992 32.7
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 6.0e-98 363.6 1077 31.0
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.0e-97 362.8 1014 32.0
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 6.7e-97 360.1 1342 34.9
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 6.7e-97 360.1 872 34.7
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 1.9e-96 358.6 956 32.9
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 2.1e-95 355.1 1315 33.8
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.7e-95 354.4 1019 32.1
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 1.4e-94 352.4 1089 31.2
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.8e-94 352.1 1079 30.7
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.5e-93 349.0 1375 33.4
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 1.7e-92 345.5 1346 33.3
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 2.7e-90 338.2 1323 32.2
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 4.6e-90 337.4 954 31.0
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 7.4e-88 330.1 878 32.9
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.0e-85 322.0 1365 29.6
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 3.2e-83 314.7 1277 29.9
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 6.1e-82 310.5 938 31.9
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 1.8e-81 308.9 1290 32.6
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 3.9e-81 307.8 1091 29.2
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 1.7e-79 302.4 880 30.8
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 3.7e-79 301.2 710 33.4
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.7e-79 301.2 1022 31.4
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 4.8e-79 300.8 732 32.4
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.1e-78 299.7 746 32.3
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 1.4e-78 299.3 902 32.0
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.5e-77 295.8 1096 29.5
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 2.6e-77 295.0 886 33.3
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 8.5e-76 290.0 1017 29.9
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 1.4e-75 289.3 950 30.8
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 4.2e-75 287.7 733 33.2
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 4.7e-74 284.3 1231 33.2
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 2.3e-73 282.0 1270 32.4
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 3.9e-73 281.2 1358 31.4
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 8.8e-73 280.0 1017 29.1
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 9.7e-72 276.6 722 30.9
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 1.7e-71 275.8 1010 27.6
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.8e-71 275.0 571 33.5
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 1.1e-70 273.1 1348 30.4
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 3.1e-70 271.6 1074 28.1
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 3.1e-70 271.6 826 30.8
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 4.1e-70 271.2 982 29.8
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 7.0e-70 270.4 861 31.5
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 9.1e-70 270.0 856 32.4
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 1.5e-69 269.2 664 32.4
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.1e-67 263.1 856 31.9
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.2e-66 259.6 839 31.8
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 6.1e-66 257.3 960 27.8
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 1.8e-65 255.8 910 30.2
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 3.3e-64 251.5 1043 27.7
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 7.4e-64 250.4 952 29.8
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.3e-63 249.6 990 28.1
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 8.2e-63 246.9 1063 26.6
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.2e-61 243.0 717 30.4
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 1.2e-61 243.0 1288 31.8
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 2.9e-60 238.4 1348 26.5
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.2e-58 233.0 941 29.2
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 2.7e-58 231.9 960 28.4
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 4.7e-58 231.1 999 28.3
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 4.0e-57 228.0 966 26.7
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.2e-56 226.5 1328 25.8
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 2.0e-56 225.7 942 26.6
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 5.7e-56 224.2 985 25.7
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.3e-55 223.0 894 28.7
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 2.4e-54 218.8 766 27.9
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 3.5e-53 214.9 936 26.2
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 4.5e-53 214.5 924 25.6
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 3.8e-52 211.5 985 27.2
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 1.6e-50 206.1 962 25.2
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 1.8e-49 202.6 1042 25.2
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 1.3e-47 196.4 971 24.8
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.3e-47 196.4 971 24.8
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 2.2e-47 195.7 828 28.6
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 3.1e-46 191.8 964 25.1
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 4.1e-46 191.4 1292 27.2
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 7.0e-46 190.7 1010 24.7
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 9.1e-46 190.3 1019 25.3
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.7e-44 186.0 942 25.1
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 7.2e-43 180.6 355 35.8
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 7.2e-43 180.6 355 35.8
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 9.5e-43 180.3 739 27.5
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 6.1e-42 177.6 355 35.5
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 6.1e-42 177.6 848 25.9
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 4.0e-41 174.9 837 25.6
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 1.3e-39 169.9 940 23.9
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 5.4e-38 164.5 697 25.1
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 7.8e-37 160.6 513 28.8
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.0e-36 160.2 881 24.3
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 5.0e-36 157.9 1066 23.5
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 6.6e-36 157.5 901 26.1
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 8.0e-34 150.6 349 30.9
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 6.8e-33 147.5 1031 23.1
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 2.2e-31 142.5 507 27.0
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 7.8e-29 134.0 1013 34.5
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 6.0e-21 107.8 322 32.0
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 4.7e-18 98.2 983 21.9
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.8e-17 94.4 160 40.6
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 9.9e-16 90.5 232 29.7
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 6.4e-15 87.8 260 30.0
SGA_v2.0_scaffold73G24471 Striga asiatica HOM05D005129 ORTHO05D005585 1.0e-12 80.5 110 46.4
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 2.5e-11 75.9 486 37.0
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 2.4e-09 69.3 128 37.5
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 2.4e-09 69.3 166 31.3
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 3.1e-09 68.9 166 31.3
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 8.9e-09 67.4 166 30.1
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 8.9e-09 67.4 341 22.9
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 1.2e-08 67.0 128 35.2
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 2.0e-08 66.2 471 24.6
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 4.4e-08 65.1 122 34.4
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 7.6e-08 64.3 497 24.3
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 6.4e-07 61.2 299 27.4
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 4.2e-06 58.5 119 36.1


User provided reference genes

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