Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 2.5e-69 265.4 141 100.0
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 8.4e-57 223.8 141 88.7
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 3.0e-54 215.3 141 85.1
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 3.9e-54 214.9 141 85.8
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 8.7e-54 213.8 141 83.7
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 3.3e-53 211.8 140 84.3
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 1.3e-52 209.9 139 84.2
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 1.3e-52 209.9 141 83.0
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 1.6e-52 209.5 139 83.5
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 1.6e-52 209.5 140 83.6
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 6.2e-52 207.6 141 81.6
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 8.1e-52 207.2 140 80.0
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 8.1e-52 207.2 140 82.1
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 8.1e-52 207.2 140 82.1
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 1.8e-51 206.1 140 82.1
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 1.8e-51 206.1 138 81.9
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 2.4e-51 205.7 140 81.4
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 2.4e-51 205.7 138 81.9
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 4.0e-51 204.9 140 82.9
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 5.3e-51 204.5 141 79.4
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 6.9e-51 204.1 140 80.7
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 6.9e-51 204.1 139 82.0
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 6.9e-51 204.1 139 82.0
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 6.9e-51 204.1 138 81.2
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 9.0e-51 203.8 140 80.7
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 9.0e-51 203.8 138 81.2
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 9.0e-51 203.8 140 80.0
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 1.2e-50 203.4 139 81.3
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 1.2e-50 203.4 140 80.0
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.5e-50 203.0 139 81.3
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 2.0e-50 202.6 138 80.4
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 2.6e-50 202.2 140 79.3
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.4e-50 201.8 139 82.0
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 5.8e-50 201.1 140 79.3
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 5.8e-50 201.1 140 80.0
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 5.8e-50 201.1 139 81.3
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 9.9e-50 200.3 140 79.3
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 9.9e-50 200.3 139 80.6
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 9.9e-50 200.3 138 79.7
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 9.9e-50 200.3 140 80.0
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 1.3e-49 199.9 138 79.0
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 1.7e-49 199.5 140 79.3
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 1.7e-49 199.5 138 79.7
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 2.2e-49 199.1 138 79.7
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 2.2e-49 199.1 139 79.1
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 2.2e-49 199.1 140 79.3
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 2.2e-49 199.1 138 79.7
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 2.9e-49 198.7 138 79.0
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 3.8e-49 198.4 140 79.3
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 3.8e-49 198.4 140 77.9
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 4.9e-49 198.0 140 77.1
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 6.4e-49 197.6 138 78.3
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 6.4e-49 197.6 140 79.3
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 6.4e-49 197.6 140 77.9
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 8.4e-49 197.2 140 79.3
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 1.4e-48 196.4 139 77.0
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 1.9e-48 196.1 140 77.9
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 2.4e-48 195.7 140 78.6
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 4.2e-48 194.9 139 76.3
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.2e-48 194.9 139 79.9
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.5e-48 194.5 139 79.1
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 7.1e-48 194.1 139 77.7
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 9.3e-48 193.7 140 75.0
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 9.3e-48 193.7 137 81.0
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 9.3e-48 193.7 139 77.0
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 8.7e-46 187.2 139 74.1
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 8.7e-46 187.2 139 74.1
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 1.1e-45 186.8 139 74.8
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.5e-45 186.4 138 73.9
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.5e-45 186.4 157 70.1
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 2.5e-45 185.7 139 73.4
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 2.5e-45 185.7 139 73.4
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 2.5e-45 185.7 139 73.4
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.5e-45 185.7 138 73.9
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 5.6e-45 184.5 139 71.2
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 9.6e-45 183.7 139 72.7
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 9.6e-45 183.7 139 72.7
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 2.1e-44 182.6 140 73.6
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 2.8e-44 182.2 121 79.3
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 1.4e-43 179.9 119 84.0
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 1.8e-43 179.5 121 80.2
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 4.0e-43 178.3 123 77.2
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.3e-43 177.9 130 78.5
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 6.9e-43 177.6 134 70.9
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 1.2e-42 176.8 130 76.9
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 1.2e-42 176.8 123 77.2
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 1.2e-42 176.8 139 72.7
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 2.0e-42 176.0 120 81.7
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 4.5e-42 174.9 195 56.9
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 4.5e-42 174.9 130 76.9
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 1.0e-41 173.7 121 78.5
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 1.3e-41 173.3 157 64.3
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 2.9e-41 172.2 143 70.6
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 3.8e-41 171.8 139 67.6
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 6.5e-41 171.0 118 78.8
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 8.4e-41 170.6 117 82.1
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 1.1e-40 170.2 120 76.7
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 1.9e-40 169.5 118 80.5
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 7.1e-40 167.5 134 73.1
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 1.2e-39 166.8 118 79.7
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 1.6e-39 166.4 118 77.1
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 2.1e-39 166.0 121 75.2
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 6.0e-39 164.5 118 77.1
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 7.9e-39 164.1 117 76.1
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 2.3e-38 162.5 136 70.6
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 5.1e-38 161.4 90 92.2
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 6.7e-38 161.0 87 96.6
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 1.9e-37 159.5 121 71.9
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 3.3e-37 158.7 121 71.9
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 4.3e-37 158.3 87 93.1
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 2.8e-36 155.6 128 68.8
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 4.8e-36 154.8 87 90.8
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 1.1e-35 153.7 136 60.3
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 2.4e-35 152.5 138 61.6
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 4.1e-35 151.8 87 87.4
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 1.2e-34 150.2 134 64.2
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 2.6e-34 149.1 100 81.0
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 3.4e-34 148.7 140 57.9
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 4.5e-34 148.3 141 63.1
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 7.6e-34 147.5 100 81.0
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 7.6e-34 147.5 89 85.4
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 1.7e-33 146.4 94 79.8
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 2.2e-33 146.0 122 63.9
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 3.8e-33 145.2 128 65.6
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 5.0e-33 144.8 94 78.7
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 6.5e-33 144.4 110 72.7
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 1.1e-32 143.7 93 83.9
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 9.3e-32 140.6 97 77.3
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 4.6e-31 138.3 100 78.0
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 1.0e-30 137.1 101 77.2
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 2.3e-30 136.0 108 73.1
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 2.5e-29 132.5 74 90.5
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 4.3e-29 131.7 86 77.9
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 1.6e-28 129.8 139 60.4
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 4.5e-26 121.7 66 92.4
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 7.7e-26 120.9 64 95.3
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 1.3e-25 120.2 90 71.1
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 3.0e-22 109.0 90 70.0
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 9.7e-21 104.0 76 75.0
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 1.1e-19 100.5 74 75.7
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 7.7e-18 94.4 134 42.5
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 1.3e-17 93.6 135 39.3
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 4.2e-16 88.6 80 60.0
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 5.5e-16 88.2 119 50.4
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 5.5e-16 88.2 77 62.3
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 1.2e-15 87.0 79 60.8
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.6e-15 86.7 77 61.0
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 6.1e-15 84.7 87 56.3
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 1.8e-14 83.2 46 91.3
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 1.8e-14 83.2 78 60.3
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 2.0e-13 79.7 78 57.7
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 1.8e-11 73.2 131 32.8
CBR_g48714 Chara braunii HOM05D004997 ORTHO05D005921 4.5e-10 68.6 135 36.3
arahy.Tifrunner.gnm1.ann1.MPJ1GQ Arachis hypogaea HOM05D004997 ORTHO05D005921 3.2e-08 62.4 51 68.6
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 3.2e-08 62.4 136 30.9


User provided reference genes

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