Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold332G48969 Striga asiatica HOM05D002071 ORTHO05D002109 5.3e-47 191.0 124 100.0
vmacro09777 Vaccinium macrocarpon HOM05D002071 ORTHO05D002109 3.4e-09 65.5 74 54.1
SGA_v2.0_scaffold7G03596 Striga asiatica HOM05D002071 ORTHO05D002109 7.5e-09 64.3 66 62.1
GSVIVG01020284001 Vitis vinifera HOM05D002071 ORTHO05D002109 7.5e-09 64.3 72 55.6
MSTRG.16107 Avicennia marina HOM05D002071 ORTHO05D002109 9.8e-09 63.9 72 56.9
Nn7g37944 Nelumbo nucifera HOM05D002071 ORTHO05D002109 9.8e-09 63.9 72 55.6
Rhsim04G0005400 Rhododendron simsii HOM05D002071 ORTHO05D002109 9.8e-09 63.9 72 56.9
SGA_v2.0_scaffold1110G53845 Striga asiatica HOM05D002071 ORTHO05D002109 9.8e-09 63.9 72 56.9
Lj1A907T21 Lonicera japonica HOM05D002071 ORTHO05D002109 2.2e-08 62.8 72 55.6
Migut.M01546 Erythranthe guttata HOM05D002071 ORTHO05D002109 2.8e-08 62.4 72 55.6
Cc05_g16230 Coffea canephora HOM05D002071 ORTHO05D002109 3.7e-08 62.0 72 54.2
Hund12438 Selenicereus undatus HOM05D002071 ORTHO05D002109 3.7e-08 62.0 72 55.6
MSTRG.7066 Avicennia marina HOM05D002071 ORTHO05D002109 4.9e-08 61.6 72 55.6
CSS0016057 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 6.3e-08 61.2 66 59.1
CSS0048525 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 6.3e-08 61.2 66 59.1
Migut.H01684 Erythranthe guttata HOM05D002071 ORTHO05D002109 6.3e-08 61.2 54 64.8
Lsat_1_v5_gn_7_111701 Lactuca sativa HOM05D002071 ORTHO05D002109 8.3e-08 60.8 67 56.7
Oeu051671.4 Olea europaea HOM05D002071 ORTHO05D002109 8.3e-08 60.8 72 52.8
QL04p077077 Quercus lobata HOM05D002071 ORTHO05D002109 8.3e-08 60.8 66 57.6
CAN.G492.71 Capsicum annuum HOM05D002071 ORTHO05D002109 1.1e-07 60.5 66 57.6
CiPaw.11G065000 Carya illinoinensis HOM05D002071 ORTHO05D002109 1.1e-07 60.5 72 52.8
Thecc.07G160300 Theobroma cacao HOM05D002071 ORTHO05D002109 1.1e-07 60.5 73 52.1
Dinv19606 Davidia involucrata HOM05D000604 ORTHO05D000990 1.4e-07 60.1 72 52.8
Eucgr.F04426 Eucalyptus grandis HOM05D002071 ORTHO05D002109 1.4e-07 60.1 66 57.6
Manes.06G173700 Manihot esculenta HOM05D002071 ORTHO05D002109 1.4e-07 60.1 60 56.7
TWI39G1254 Tripterygium wilfordii HOM05D002071 ORTHO05D002109 1.4e-07 60.1 72 52.8
CAN.G943.44 Capsicum annuum HOM05D002071 ORTHO05D002109 1.8e-07 59.7 52 63.5
SalBow8G1388 Salvia bowleyana HOM05D002071 ORTHO05D002109 1.8e-07 59.7 72 52.8
QL04p066911 Quercus lobata HOM05D002071 ORTHO05D002109 2.4e-07 59.3 66 56.1
MELO3C019653.2 Cucumis melo HOM05D002071 ORTHO05D002109 3.1e-07 58.9 72 51.4
ECA236G3752 Erigeron canadensis HOM05D002071 ORTHO05D002109 3.1e-07 58.9 72 51.4
HanXRQChr11g0335051 Helianthus annuus HOM05D002071 ORTHO05D002109 3.1e-07 58.9 72 51.4
Hma1.2p1_0151F.1_g067560 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 3.1e-07 58.9 72 52.8
PSO675G2413 Papaver somniferum HOM05D002071 ORTHO05D002109 3.1e-07 58.9 72 52.8
PSO675G7748 Papaver somniferum HOM05D002071 ORTHO05D002109 3.1e-07 58.9 72 52.8
TAR626G1582 Trochodendron aralioides HOM05D002071 ORTHO05D002109 3.1e-07 58.9 72 52.8
RcHm_v2.0_Chr5g0026171 Rosa chinensis HOM05D002071 ORTHO05D002109 4.1e-07 58.5 66 56.1
SGA_v2.0_scaffold239G44048 Striga asiatica HOM05D002071 ORTHO05D002109 4.1e-07 58.5 72 52.8
CSS0010808 Camellia sinensis var. sinensis HOM05D002071 ORTHO05D002109 5.4e-07 58.2 72 52.8
Hma1.2p1_0637F.1_g193390 Hydrangea macrophylla HOM05D002071 ORTHO05D002109 5.4e-07 58.2 66 56.1
MSTRG.13072 Avicennia marina HOM05D002071 ORTHO05D002109 7.0e-07 57.8 66 56.1
FvH4_3g15540 Fragaria vesca HOM05D002071 ORTHO05D002109 7.0e-07 57.8 72 51.4
FAN11G0694 Fragaria x ananassa HOM05D002071 ORTHO05D002109 7.0e-07 57.8 72 51.4
FAN21G0659 Fragaria x ananassa HOM05D002071 ORTHO05D002109 7.0e-07 57.8 72 51.4
TWI38G0753 Tripterygium wilfordii HOM05D002071 ORTHO05D002109 7.0e-07 57.8 72 51.4
Actinidia35428 Actinidia chinensis HOM05D002071 ORTHO05D002109 9.2e-07 57.4 70 52.9
arahy.Tifrunner.gnm1.ann1.L1XN9H Arachis hypogaea HOM05D002071 ORTHO05D002109 9.2e-07 57.4 66 54.5
arahy.Tifrunner.gnm1.ann1.WXZ4D6 Arachis hypogaea HOM05D002071 ORTHO05D002109 9.2e-07 57.4 66 54.5
ClCG02G018560 Citrullus lanatus HOM05D002071 ORTHO05D002109 9.2e-07 57.4 56 57.1
Glyma.08G236200 Glycine max HOM05D002071 ORTHO05D002109 9.2e-07 57.4 66 54.5
Glyma.15G212200 Glycine max HOM05D002071 ORTHO05D002109 9.2e-07 57.4 66 54.5
Lj3g0001439 Lotus japonicus HOM05D002071 ORTHO05D002109 9.2e-07 57.4 66 54.5
Lalb_Chr01g0007141 Lupinus albus HOM05D002071 ORTHO05D002109 9.2e-07 57.4 66 54.5
MD10G1203900 Malus domestica HOM05D002071 ORTHO05D002109 9.2e-07 57.4 72 51.4
Medtr0260s0030 Medicago truncatula HOM05D002071 ORTHO05D002109 9.2e-07 57.4 66 54.5
Nitab4.5_0002321g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 9.2e-07 57.4 64 56.2
Nitab4.5_0002633g0030 Nicotiana tabacum HOM05D002071 ORTHO05D002109 9.2e-07 57.4 64 56.2
Peaxi162Scf00452g00621 Petunia axillaris HOM05D002071 ORTHO05D002109 9.2e-07 57.4 64 56.2
Phvul.011G174200 Phaseolus vulgaris HOM05D002071 ORTHO05D002109 9.2e-07 57.4 66 54.5
Psat4g141000 Pisum sativum HOM05D002071 ORTHO05D002109 9.2e-07 57.4 66 54.5
Prupe.4G138000 Prunus persica HOM05D002071 ORTHO05D002109 9.2e-07 57.4 72 51.4
Solyc07g066520.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 9.2e-07 57.4 64 56.2
Sopen07g034680 Solanum pennellii HOM05D002071 ORTHO05D002109 9.2e-07 57.4 64 56.2
PGSC0003DMG400022123 Solanum tuberosum HOM05D002071 ORTHO05D002109 9.2e-07 57.4 64 56.2
TPR.G28740 Trifolium pratense HOM05D000002 ORTHO05D000001 9.2e-07 57.4 66 54.5
BcaB02g06637 Brassica carinata HOM05D002071 ORTHO05D002109 1.2e-06 57.0 66 54.5
Carub.0001s1628 Capsella rubella HOM05D002071 ORTHO05D002109 1.2e-06 57.0 66 54.5
COL.COLO4_38371 Corchorus olitorius HOM05D002071 ORTHO05D002109 1.2e-06 57.0 66 54.5
Duzib213G0850 Durio zibethinus HOM05D002071 ORTHO05D002109 1.2e-06 57.0 66 54.5
Thhalv10008187m.g Eutrema salsugineum HOM05D002071 ORTHO05D002109 1.2e-06 57.0 66 54.5
Sp1g14690 Schrenkiella parvula HOM05D002071 ORTHO05D002109 1.2e-06 57.0 66 54.5
THA.LOC104808126 Tarenaya hassleriana HOM05D002071 ORTHO05D002109 1.2e-06 57.0 66 54.5
TAR629G2653 Trochodendron aralioides HOM05D002071 ORTHO05D002109 1.2e-06 57.0 66 54.5
Actinidia07364 Actinidia chinensis HOM05D002071 ORTHO05D002109 1.6e-06 56.6 72 50.0
Aa31LG7G1070 Aethionema arabicum HOM05D002071 ORTHO05D002109 1.6e-06 56.6 66 54.5
ATR0763G240 Amborella trichopoda HOM05D002071 ORTHO05D002109 1.6e-06 56.6 66 54.5
AL1G28690 Arabidopsis lyrata HOM05D002071 ORTHO05D002109 1.6e-06 56.6 66 54.5
MD05G1222300 Malus domestica HOM05D002071 ORTHO05D002109 1.6e-06 56.6 66 54.5
Sed0026955 Sechium edule HOM05D002071 ORTHO05D002109 1.6e-06 56.6 72 50.0
Cpa.g.sc331.4 Carica papaya HOM05D002071 ORTHO05D002109 2.0e-06 56.2 72 50.0
Ca_27015_v3 Cicer arietinum L. HOM05D002071 ORTHO05D002109 2.0e-06 56.2 66 53.0
CsaV3_6G013640 Cucumis sativus L. HOM05D002071 ORTHO05D002109 2.0e-06 56.2 72 50.0
DCAR_030853 Daucus carota HOM05D002071 ORTHO05D002109 2.0e-06 56.2 66 54.5
FAN25G0138 Fragaria x ananassa HOM05D002071 ORTHO05D002109 2.0e-06 56.2 72 50.0
Cfa019415 Carpinus fangiana HOM05D002071 ORTHO05D002109 2.7e-06 55.8 66 53.0
Lalb_Chr03g0031741 Lupinus albus HOM05D002071 ORTHO05D002109 2.7e-06 55.8 66 53.0
Sed0010908 Sechium edule HOM05D002071 ORTHO05D002109 2.7e-06 55.8 72 50.0
Solyc10g005580.3 Solanum lycopersicum HOM05D002071 ORTHO05D002109 2.7e-06 55.8 66 53.0
Sopen10g001550 Solanum pennellii HOM05D002071 ORTHO05D002109 2.7e-06 55.8 66 53.0
Zm00001eb052610 Zea mays HOM05D002071 ORTHO05D002109 2.7e-06 55.8 66 54.5
AT1G16520 Arabidopsis thaliana HOM05D002071 ORTHO05D002109 3.5e-06 55.5 66 53.0
A06p12520 Brassica napus HOM05D002071 ORTHO05D002109 3.5e-06 55.5 66 53.0
BraA06t24415Z Brassica rapa HOM05D002071 ORTHO05D002109 3.5e-06 55.5 66 53.0
Ciclev10005358m.g Citrus clementina HOM05D002071 ORTHO05D002109 3.5e-06 55.5 72 50.0
Dinv42502 Davidia involucrata HOM05D002071 ORTHO05D002109 3.5e-06 55.5 66 53.0
FAN16G0661 Fragaria x ananassa HOM05D002071 ORTHO05D002109 3.5e-06 55.5 72 50.0
Gohir.A11G291700 Gossypium hirsutum HOM05D002071 ORTHO05D002109 3.5e-06 55.5 72 50.0
Gohir.D11G300500 Gossypium hirsutum HOM05D002071 ORTHO05D002109 3.5e-06 55.5 72 50.0
Lalb_Chr19g0133321 Lupinus albus HOM05D002071 ORTHO05D002109 3.5e-06 55.5 66 53.0
Nitab4.5_0000611g0040 Nicotiana tabacum HOM05D002071 ORTHO05D002109 3.5e-06 55.5 64 54.7
Gorai.007G336300 Gossypium raimondii HOM05D002071 ORTHO05D002109 4.5e-06 55.1 72 50.0
Sp5g34190 Schrenkiella parvula HOM05D002071 ORTHO05D002109 4.5e-06 55.1 66 53.0
CARHR017000 Cardamine hirsuta HOM05D002071 ORTHO05D002109 5.9e-06 54.7 66 53.0
Os03g0659800 Oryza sativa ssp. japonica HOM05D002071 ORTHO05D002109 5.9e-06 54.7 66 53.0
Actinidia12779 Actinidia chinensis HOM05D002071 ORTHO05D002109 7.7e-06 54.3 66 51.5
EL10Ac2g03284 Beta vulgaris HOM05D002071 ORTHO05D002109 7.7e-06 54.3 78 46.2
C05p14780 Brassica napus HOM05D002071 ORTHO05D002109 7.7e-06 54.3 66 51.5


User provided reference genes

Program Settings