Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold332G48948 Striga asiatica HOM05D017394 ORTHO05D001737 4.3e-76 288.1 167 100.0
SGA_v2.0_scaffold191G40486 Striga asiatica HOM05D017394 ORTHO05D001737 2.6e-33 146.0 107 74.8
SGA_v2.0_scaffold37G14762 Striga asiatica HOM05D017394 ORTHO05D001737 2.2e-32 142.9 139 61.2
SGA_v2.0_scaffold113G31714 Striga asiatica HOM05D017394 ORTHO05D001737 2.5e-31 139.4 163 53.4
SGA_v2.0_scaffold143G35747 Striga asiatica HOM05D017394 ORTHO05D001737 1.2e-30 137.1 94 73.4
SGA_v2.0_scaffold50G18424 Striga asiatica HOM05D017394 ORTHO05D001737 3.0e-29 132.5 97 82.5
SGA_v2.0_scaffold142G35665 Striga asiatica HOM05D017394 ORTHO05D001737 1.7e-27 126.7 164 50.6
unitig_0.g2758 Utricularia gibba HOM05D001878 ORTHO05D001737 6.5e-16 88.2 188 38.3
Oeu037430.1 Olea europaea HOM05D001878 ORTHO05D001737 9.4e-15 84.3 73 64.4
Oeu019262.1 Olea europaea HOM05D001878 ORTHO05D001737 2.1e-14 83.2 73 64.4
Cc02_g25370 Coffea canephora HOM05D001878 ORTHO05D001737 5.2e-13 78.6 66 59.1
unitig_748.g7119 Utricularia gibba HOM05D001878 ORTHO05D001737 1.5e-12 77.0 187 35.8
MSTRG.4940 Avicennia marina HOM05D001878 ORTHO05D001737 3.3e-12 75.9 183 42.1
Glyma.18G248000 Glycine max HOM05D001878 ORTHO05D001737 5.7e-12 75.1 64 57.8
Lsat_1_v5_gn_4_40001 Lactuca sativa HOM05D001878 ORTHO05D001737 5.7e-12 75.1 66 56.1
Nitab4.5_0000563g0150 Nicotiana tabacum HOM05D001878 ORTHO05D001737 5.7e-12 75.1 48 70.8
Nitab4.5_0011684g0010 Nicotiana tabacum HOM05D001878 ORTHO05D001737 5.7e-12 75.1 48 70.8
SGA_v2.0_scaffold288G47234 Striga asiatica HOM05D017394 ORTHO05D001737 5.7e-12 75.1 127 45.7
Oeu026349.1 Olea europaea HOM05D001878 ORTHO05D001737 7.5e-12 74.7 173 37.6
VMungo1383G0933 Vigna mungo HOM05D001878 ORTHO05D001737 9.7e-12 74.3 64 57.8
CAN.G756.42 Capsicum annuum HOM05D001878 ORTHO05D001737 1.3e-11 73.9 58 58.6
Phvul.008G049300 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 1.3e-11 73.9 64 56.2
SalBow5G0976 Salvia bowleyana HOM05D007698 ORTHO05D009663 1.3e-11 73.9 163 43.6
SalBow5G4762 Salvia bowleyana HOM05D007698 ORTHO05D009663 1.3e-11 73.9 163 43.6
COL.COLO4_18392 Corchorus olitorius HOM05D001878 ORTHO05D001737 2.8e-11 72.8 53 62.3
PGSC0003DMG400001696 Solanum tuberosum HOM05D001878 ORTHO05D001737 2.8e-11 72.8 63 58.7
Gohir.A08G139800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 4.8e-11 72.0 72 50.0
Gohir.D08G160800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 4.8e-11 72.0 72 50.0
Gorai.004G167100 Gossypium raimondii HOM05D001878 ORTHO05D001737 4.8e-11 72.0 72 50.0
Sabra14G0036200 Salix brachista HOM05D001878 ORTHO05D001737 4.8e-11 72.0 92 46.7
Sabra14G0038300 Salix brachista HOM05D001878 ORTHO05D001737 6.3e-11 71.6 92 46.7
Sopen01g035660 Solanum pennellii HOM05D001878 ORTHO05D001737 8.2e-11 71.2 63 57.1
Potri.014G051200 Populus trichocarpa HOM05D001878 ORTHO05D001737 1.1e-10 70.9 89 44.9
Aa31LG1G26270 Aethionema arabicum HOM05D001878 ORTHO05D001737 1.4e-10 70.5 72 50.0
Migut.N01727 Erythranthe guttata HOM05D001878 ORTHO05D001737 1.4e-10 70.5 138 45.7
Lsat_1_v5_gn_1_84200 Lactuca sativa HOM05D001878 ORTHO05D001737 1.4e-10 70.5 66 56.1
Lalb_Chr13g0290701 Lupinus albus HOM05D001878 ORTHO05D001737 1.4e-10 70.5 53 58.5
Solyc01g088820.2 Solanum lycopersicum HOM05D001878 ORTHO05D001737 1.4e-10 70.5 48 66.7
Carub.0004s2728 Capsella rubella HOM05D001878 ORTHO05D001737 1.8e-10 70.1 72 55.6
TWI14G1354 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 1.8e-10 70.1 91 44.0
Peaxi162Scf00853g00433 Petunia axillaris HOM05D001878 ORTHO05D001737 2.4e-10 69.7 53 60.4
Potri.002G139500 Populus trichocarpa HOM05D001878 ORTHO05D001737 2.4e-10 69.7 91 42.9
TWI59G0138 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 2.4e-10 69.7 75 49.3
BcaC02g12281 Brassica carinata HOM05D001878 ORTHO05D001737 3.1e-10 69.3 71 52.1
C04p05690 Brassica napus HOM05D001878 ORTHO05D001737 3.1e-10 69.3 71 52.1
Rhsim01G0141600 Rhododendron simsii HOM05D001878 ORTHO05D001737 3.1e-10 69.3 91 47.3
CSS0031983 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 5.3e-10 68.6 37 78.4
Glyma.09G245300 Glycine max HOM05D001878 ORTHO05D001737 5.3e-10 68.6 87 44.8
Lsat_1_v5_gn_1_84280 Lactuca sativa HOM05D001878 ORTHO05D001737 7.0e-10 68.2 66 56.1
Lj1g0024989 Lotus japonicus HOM05D001878 ORTHO05D001737 7.0e-10 68.2 65 52.3
Glyma.07G254502 Glycine max HOM05D001878 ORTHO05D001737 9.1e-10 67.8 86 46.5
Medtr7g081190 Medicago truncatula HOM05D001878 ORTHO05D001737 1.2e-09 67.4 73 50.7
Psat3g099720 Pisum sativum HOM05D001878 ORTHO05D001737 1.6e-09 67.0 68 52.9
Thhalv10001488m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 2.0e-09 66.6 46 63.0
SalBow7G3666 Salvia bowleyana HOM05D001878 ORTHO05D001737 2.0e-09 66.6 33 78.8
CARHR139940 Cardamine hirsuta HOM05D001878 ORTHO05D001737 2.7e-09 66.2 69 52.2
CiPaw.14G018500 Carya illinoinensis HOM05D001878 ORTHO05D001737 2.7e-09 66.2 80 46.2
Sp4g26780 Schrenkiella parvula HOM05D001878 ORTHO05D001737 2.7e-09 66.2 46 60.9
BcaB02g08851 Brassica carinata HOM05D001878 ORTHO05D001737 3.5e-09 65.9 69 50.7
BcaC02g12279 Brassica carinata HOM05D001878 ORTHO05D001737 3.5e-09 65.9 69 50.7
CiPaw.13G024400 Carya illinoinensis HOM05D001878 ORTHO05D001737 3.5e-09 65.9 73 47.9
Psat4g031080 Pisum sativum HOM05D001878 ORTHO05D001737 4.5e-09 65.5 89 43.8
ECA248G2444 Erigeron canadensis HOM05D001878 ORTHO05D001737 5.9e-09 65.1 38 71.1
Phvul.003G097500 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 5.9e-09 65.1 59 54.2
QL04p028592 Quercus lobata HOM05D001878 ORTHO05D001737 5.9e-09 65.1 59 52.5
QL04p028713 Quercus lobata HOM05D001878 ORTHO05D001737 5.9e-09 65.1 59 52.5
Ah.01g019780 Amaranthus hybridus HOM05D001878 ORTHO05D001737 7.7e-09 64.7 38 71.1
BolC4t22199H Brassica oleracea HOM05D001878 ORTHO05D001737 7.7e-09 64.7 68 50.0
Glyma.08G051800 Glycine max HOM05D001878 ORTHO05D001737 7.7e-09 64.7 56 55.4
HPP92_012963 Vanilla planifolia HOM05D001878 ORTHO05D001737 7.7e-09 64.7 52 59.6
Atru.chr5.102 Acer truncatum HOM05D001878 ORTHO05D001737 1.0e-08 64.3 79 45.6
BcaC01g05201 Brassica carinata HOM05D001878 ORTHO05D001737 1.0e-08 64.3 46 63.0
BolC3t15314H Brassica oleracea HOM05D001878 ORTHO05D001737 1.0e-08 64.3 46 63.0
VMungo1215G1720 Vigna mungo HOM05D001878 ORTHO05D001737 1.0e-08 64.3 85 43.5
AT2G44730 Arabidopsis thaliana HOM05D001878 ORTHO05D001737 1.7e-08 63.5 68 51.5
Cpa.g.sc41.83 Carica papaya HOM05D001878 ORTHO05D001737 1.7e-08 63.5 68 48.5
A05p04860 Brassica napus HOM05D001878 ORTHO05D001737 2.2e-08 63.2 68 48.5
BraA03t11694Z Brassica rapa HOM05D001878 ORTHO05D001737 2.2e-08 63.2 70 51.4
BraA05t19461Z Brassica rapa HOM05D001878 ORTHO05D001737 2.2e-08 63.2 68 48.5
Ca_21569_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 2.2e-08 63.2 56 51.8
AL4G43780 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 2.9e-08 62.8 68 50.0
BcaC01g05198 Brassica carinata HOM05D001878 ORTHO05D001737 2.9e-08 62.8 69 52.2
A03p24870 Brassica napus HOM05D001878 ORTHO05D001737 2.9e-08 62.8 70 51.4
C03p29660 Brassica napus HOM05D001878 ORTHO05D001737 2.9e-08 62.8 69 52.2
MD07G1097300 Malus domestica HOM05D001878 ORTHO05D001737 2.9e-08 62.8 103 38.8
BcaC01g05200 Brassica carinata HOM05D001878 ORTHO05D001737 3.8e-08 62.4 69 49.3
CANSAT25G3641 Cannabis sativa HOM05D001878 ORTHO05D001737 3.8e-08 62.4 37 70.3
Duzib133G0474 Durio zibethinus HOM05D001878 ORTHO05D001737 3.8e-08 62.4 35 71.4
HanXRQChr01g0017711 Helianthus annuus HOM05D001878 ORTHO05D001737 3.8e-08 62.4 43 62.8
Thecc.01G400100 Theobroma cacao HOM05D001878 ORTHO05D001737 3.8e-08 62.4 35 71.4
TAR629G0579 Trochodendron aralioides HOM05D001878 ORTHO05D001737 3.8e-08 62.4 74 48.6
Medtr4g117990 Medicago truncatula HOM05D001878 ORTHO05D001737 5.0e-08 62.0 35 71.4
PGR042G1541 Punica granatum HOM05D001878 ORTHO05D001737 5.0e-08 62.0 92 42.4
BcaB04g18388 Brassica carinata HOM05D001878 ORTHO05D001737 6.5e-08 61.6 47 66.0
Ca_08044_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 6.5e-08 61.6 68 47.1
Ciclev10020863m.g Citrus clementina HOM05D001878 ORTHO05D001737 6.5e-08 61.6 54 51.9
TPR.G28130 Trifolium pratense HOM05D001878 ORTHO05D001737 6.5e-08 61.6 68 44.1
MBI04_g13859_MAGBIO Magnolia biondii HOM05D001878 ORTHO05D001737 8.5e-08 61.2 37 73.0
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.1e-07 60.8 68 45.6
DCAR_029489 Daucus carota HOM05D001878 ORTHO05D001737 1.1e-07 60.8 54 53.7
TAR375G1013 Trochodendron aralioides HOM05D001878 ORTHO05D001737 1.1e-07 60.8 37 67.6
MD02G1219900 Malus domestica HOM05D001878 ORTHO05D001737 1.5e-07 60.5 103 36.9
Manes.05G056800 Manihot esculenta HOM05D001878 ORTHO05D001737 1.5e-07 60.5 87 40.2
SGA_v2.0_scaffold143G35746 Striga asiatica HOM05D056464 ORTHO05D001737 1.5e-07 60.5 50 62.0
BraA01t01951Z Brassica rapa HOM05D001878 ORTHO05D001737 1.9e-07 60.1 53 50.9
Nn1g00752 Nelumbo nucifera HOM05D001878 ORTHO05D001737 1.9e-07 60.1 53 54.7
SGA_v2.0_scaffold50G18423 Striga asiatica HOM05D056464 ORTHO05D001737 1.9e-07 60.1 50 86.0
BcaNung00128 Brassica carinata HOM05D001878 ORTHO05D001737 2.5e-07 59.7 53 56.6
RcHm_v2.0_Chr1g0345291 Rosa chinensis HOM05D001878 ORTHO05D001737 3.2e-07 59.3 52 51.9
CDE04G2863 Ceratophyllum demersum HOM05D001878 ORTHO05D001737 4.2e-07 58.9 72 45.8
Lj4g0024312 Lotus japonicus HOM05D001878 ORTHO05D001737 4.2e-07 58.9 69 47.8
BolC1t02491H Brassica oleracea HOM05D001878 ORTHO05D001737 5.5e-07 58.5 53 50.9
Duzib268G0102 Durio zibethinus HOM05D001878 ORTHO05D001737 5.5e-07 58.5 35 68.6
Gohir.A12G212500 Gossypium hirsutum HOM05D001878 ORTHO05D001737 5.5e-07 58.5 51 51.0
Sc14g0001740 Simmondsia chinensis HOM05D001878 ORTHO05D001737 5.5e-07 58.5 78 43.6
Cfa011046 Carpinus fangiana HOM05D001878 ORTHO05D001737 7.2e-07 58.2 154 33.1
Haze_02877 Corylus avellana HOM05D001878 ORTHO05D001737 7.2e-07 58.2 154 33.1
Dinv44041 Davidia involucrata HOM05D001878 ORTHO05D001737 7.2e-07 58.2 31 77.4
PSO063G3234 Papaver somniferum HOM05D001878 ORTHO05D001737 7.2e-07 58.2 74 39.2
PSO782G1295 Papaver somniferum HOM05D001878 ORTHO05D001737 7.2e-07 58.2 69 42.0
EL10Ac9g21782 Beta vulgaris HOM05D001878 ORTHO05D001737 9.4e-07 57.8 31 74.2
Aa31LG9G15110 Aethionema arabicum HOM05D001878 ORTHO05D001737 1.2e-06 57.4 57 45.6
Gohir.D12G215000 Gossypium hirsutum HOM05D001878 ORTHO05D001737 1.6e-06 57.0 51 49.0
Gorai.008G230600 Gossypium raimondii HOM05D001878 ORTHO05D001737 1.6e-06 57.0 51 49.0
GSVIVG01003683001 Vitis vinifera HOM05D001878 ORTHO05D001737 1.6e-06 57.0 53 49.1
AUR62016671 Chenopodium quinoa HOM05D001878 ORTHO05D001737 2.1e-06 56.6 68 44.1
THA.LOC104802500 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 2.1e-06 56.6 35 65.7
Thecc.03G239800 Theobroma cacao HOM05D001878 ORTHO05D001737 2.1e-06 56.6 38 60.5
BcaB04g18385 Brassica carinata HOM05D001878 ORTHO05D001737 2.7e-06 56.2 43 53.5
FAN10G3061 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.7e-06 56.2 95 40.0
Manes.02G045500 Manihot esculenta HOM05D001878 ORTHO05D001737 2.7e-06 56.2 33 69.7
THA.LOC104812737 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 2.7e-06 56.2 44 52.3
Aqoxy3G02646 Aquilegia oxysepala HOM05D001878 ORTHO05D001737 3.6e-06 55.8 38 57.9
Lalb_Chr07g0177461 Lupinus albus HOM05D001878 ORTHO05D001737 3.6e-06 55.8 56 48.2
Cc08_g11310 Coffea canephora HOM05D001878 ORTHO05D001737 4.7e-06 55.5 73 41.1
Duzib068G1299 Durio zibethinus HOM05D001878 ORTHO05D001737 4.7e-06 55.5 46 52.2
Gohir.A08G162900 Gossypium hirsutum HOM05D001878 ORTHO05D001737 4.7e-06 55.5 39 53.8
SHI13627 Sapria himalayana HOM05D001878 ORTHO05D001737 4.7e-06 55.5 71 46.5
FAN01G1421 Fragaria x ananassa HOM05D001878 ORTHO05D001737 6.1e-06 55.1 92 38.0
Oeu060056.1 Olea europaea HOM05D001878 ORTHO05D001737 6.1e-06 55.1 42 57.1
SalBow1G1933 Salvia bowleyana HOM05D001878 ORTHO05D001737 6.1e-06 55.1 32 75.0
TAR636G3009 Trochodendron aralioides HOM05D001878 ORTHO05D001737 6.1e-06 55.1 74 45.9
TWI15G0285 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 8.0e-06 54.7 52 50.0
TWI15G1115 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 8.0e-06 54.7 52 50.0


User provided reference genes

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