Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 4.5e-288 993.8 476 100.0
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 4.1e-249 864.4 476 84.7
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.6e-245 852.4 476 83.4
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 6.8e-244 847.0 478 82.0
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.1e-238 829.7 565 72.0
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 2.5e-238 828.6 488 80.9
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 8.9e-236 820.1 485 80.6
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 8.9e-236 820.1 590 69.0
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 3.8e-234 814.7 495 77.8
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 6.4e-234 813.9 495 77.8
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 1.6e-232 809.3 482 79.5
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 2.7e-232 808.5 482 79.3
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 3.0e-231 805.1 479 78.5
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 5.1e-231 804.3 491 77.4
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.5e-230 802.0 491 77.4
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 9.6e-230 800.0 478 78.7
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 1.3e-229 799.7 485 77.9
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 3.6e-229 798.1 477 79.9
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 6.2e-229 797.3 482 78.0
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.8e-228 795.8 478 77.8
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 3.1e-228 795.0 479 77.9
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 6.9e-228 793.9 486 78.4
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 6.9e-228 793.9 480 78.3
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.2e-227 793.1 491 76.2
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.5e-227 792.7 478 77.8
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 3.4e-227 791.6 478 77.8
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 4.4e-227 791.2 485 77.1
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.4e-227 791.2 478 77.8
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.8e-227 790.8 478 77.6
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 7.6e-227 790.4 485 77.3
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 9.9e-227 790.0 482 78.0
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 9.9e-227 790.0 484 77.1
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 6.4e-226 787.3 485 76.3
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 6.4e-226 787.3 518 73.2
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.4e-225 786.2 478 77.4
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 1.9e-225 785.8 491 76.2
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 7.1e-225 783.9 479 77.5
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 9.3e-225 783.5 484 74.8
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 1.2e-224 783.1 489 76.1
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.6e-224 782.7 496 76.0
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.7e-224 781.9 485 76.9
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 3.5e-224 781.6 483 76.8
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.3e-223 779.6 478 76.8
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.3e-223 779.6 476 75.8
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 1.7e-223 779.2 484 76.7
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 2.3e-223 778.9 477 76.1
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 2.3e-223 778.9 479 77.7
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.1e-222 776.5 484 76.4
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.1e-222 776.5 486 76.1
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.1e-222 776.5 478 76.6
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 5.6e-222 774.2 478 77.0
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 1.3e-221 773.1 477 74.8
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 3.6e-221 771.5 484 75.0
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 4.8e-221 771.2 484 75.0
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.8e-220 769.2 479 77.0
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 2.4e-220 768.8 484 75.6
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 4.0e-220 768.1 481 76.9
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 4.0e-220 768.1 483 76.2
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 4.0e-220 768.1 479 76.0
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.4e-219 765.0 464 77.6
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 3.4e-219 765.0 483 75.6
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 7.6e-219 763.8 486 74.7
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 7.6e-219 763.8 473 75.3
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 7.6e-219 763.8 484 74.6
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 2.9e-218 761.9 484 74.6
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.8e-218 761.5 461 78.3
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 3.8e-218 761.5 477 73.8
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 4.9e-218 761.1 487 74.5
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 6.4e-218 760.8 485 74.4
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.1e-217 760.0 483 73.5
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 4.2e-217 758.1 485 74.2
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 4.2e-217 758.1 572 65.6
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 9.3e-217 756.9 485 73.8
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 9.3e-217 756.9 483 73.3
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 6.0e-216 754.2 480 74.4
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 6.0e-216 754.2 490 73.3
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 1.8e-215 752.7 479 74.1
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.8e-215 752.7 480 74.0
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.8e-215 752.7 453 78.6
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 5.1e-215 751.1 573 64.7
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 8.7e-215 750.4 488 72.5
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 5.6e-214 747.7 482 74.3
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 7.4e-214 747.3 486 73.0
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 9.6e-214 746.9 480 73.8
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 1.3e-213 746.5 480 74.0
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 6.2e-213 744.2 509 70.9
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 4.0e-212 741.5 480 73.3
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 5.3e-212 741.1 481 71.5
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 2.0e-211 739.2 479 72.4
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 2.6e-211 738.8 480 72.7
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 5.8e-211 737.6 480 72.5
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 5.8e-211 737.6 480 72.5
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 5.8e-211 737.6 480 72.5
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 8.4e-210 733.8 477 72.3
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 8.4e-210 733.8 565 65.0
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 1.9e-209 732.6 479 71.8
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 2.3e-207 725.7 503 69.0
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 1.1e-204 716.8 476 73.3
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 3.1e-204 715.3 410 81.5
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 9.3e-201 703.7 413 80.4
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.2e-200 703.4 541 65.2
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 6.1e-200 701.0 479 70.6
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 2.2e-197 692.6 489 69.1
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 1.4e-196 689.9 503 67.0
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.2e-186 656.0 446 71.1
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-182 643.7 409 73.1
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 3.7e-181 638.6 427 70.3
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 4.2e-177 625.2 493 60.0
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.6e-176 622.1 374 78.9
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 6.1e-176 621.3 480 61.2
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.6e-171 606.7 373 74.8
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 1.3e-170 603.6 481 60.7
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 8.5e-170 600.9 373 74.3
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 2.5e-169 599.4 360 79.2
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.7e-160 569.3 327 82.3
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 8.8e-159 564.3 325 80.9
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 2.6e-158 562.8 530 54.0
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.7e-155 551.2 327 78.9
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 3.8e-154 548.9 342 75.4
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 4.9e-149 531.9 326 77.3
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 5.0e-146 521.9 325 76.0
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 6.6e-146 521.5 334 74.9
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 4.7e-144 515.4 362 69.3
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 4.9e-141 505.4 351 70.7
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.1e-136 488.0 296 77.4
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-129 467.6 328 70.1
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.9e-105 387.1 444 46.6
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.8e-103 380.6 222 78.8
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 4.2e-100 369.4 490 41.8
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 1.5e-97 360.9 226 74.8
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.8e-93 346.3 211 78.2
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.8e-90 337.4 425 44.5
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 6.9e-79 298.9 187 77.0
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.2e-76 290.0 159 83.0
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.2e-76 290.0 159 83.0
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.1e-73 281.6 145 86.9
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.5e-73 281.2 159 81.8
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.6e-57 227.3 427 33.7
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.6e-43 181.4 106 78.3
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.2e-42 176.4 94 86.2
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.5e-41 174.9 93 86.0
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.4e-41 173.3 106 75.5
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 2.2e-40 171.0 137 58.4
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 8.6e-37 159.1 119 66.4
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 8.9e-34 149.1 91 73.6
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.7e-22 110.9 67 76.1
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 3.0e-21 107.5 67 77.6
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 4.3e-20 103.6 87 58.6
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.1e-18 97.4 65 67.7
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.2e-16 91.3 76 57.9
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.4e-15 87.8 70 65.7
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 9.9e-09 65.9 125 36.0
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 7.1e-07 59.7 33 72.7


User provided reference genes

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