Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 1.5e-238 829.7 622 100.0
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 1.7e-122 444.1 555 76.2
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 1.1e-121 441.4 551 73.5
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 8.4e-101 372.1 551 70.4
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.1e-90 336.3 551 68.1
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 2.2e-88 330.9 538 68.4
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 4.3e-81 306.6 550 65.8
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 3.7e-80 303.5 550 64.2
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 5.9e-78 296.2 543 64.1
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 1.7e-77 294.7 540 64.4
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 2.5e-76 290.8 502 67.5
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 4.7e-75 286.6 538 63.4
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 4.7e-75 286.6 542 63.1
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 1.5e-73 281.6 538 62.3
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 4.8e-72 276.6 546 62.6
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 4.5e-70 270.0 455 63.5
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.5e-68 264.2 540 62.0
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.5e-68 264.2 540 62.0
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.3e-66 257.7 519 59.0
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 3.1e-63 247.3 525 62.1
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 5.3e-63 246.5 517 62.7
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 1.0e-58 232.3 535 61.1
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 9.1e-55 219.2 452 67.3
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 9.1e-55 219.2 544 57.2
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 4.4e-49 200.3 435 64.8
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 5.7e-49 199.9 181 53.6
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 7.0e-47 193.0 212 48.6
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 5.2e-42 176.8 517 57.8
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 5.7e-41 173.3 456 62.7
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 9.2e-39 166.0 211 43.1
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 7.3e-36 156.4 237 40.5
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 1.4e-34 152.1 209 43.1
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 4.0e-34 150.6 282 50.0
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 1.3e-32 145.6 220 40.5
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 4.9e-32 143.7 248 38.7
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 6.4e-32 143.3 236 36.9
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 1.1e-31 142.5 208 40.4
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 2.4e-31 141.4 186 39.8
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 4.1e-31 140.6 208 44.2
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 5.4e-31 140.2 219 39.3
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 9.2e-31 139.4 193 41.5
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.6e-30 138.7 192 44.8
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.7e-29 135.2 192 43.8
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 5.0e-29 133.7 231 36.4
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 5.0e-29 133.7 183 44.8
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 6.6e-29 133.3 233 37.8
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 6.6e-29 133.3 234 40.2
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 8.6e-29 132.9 219 38.8
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.1e-28 132.5 218 40.8
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.9e-28 131.7 189 40.7
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 1.9e-28 131.7 204 41.7
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 4.3e-28 130.6 236 36.4
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 1.2e-27 129.0 244 36.9
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 1.6e-27 128.6 188 39.4
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 2.1e-27 128.3 191 40.8
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 3.6e-27 127.5 214 38.3
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 6.2e-27 126.7 209 38.3
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 8.0e-27 126.3 211 38.4
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 1.8e-26 125.2 184 46.2
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 2.3e-26 124.8 184 46.2
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 4.0e-26 124.0 190 41.6
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 5.2e-26 123.6 191 37.7
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 5.2e-26 123.6 171 42.1
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 8.9e-26 122.9 191 39.8
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 2.0e-25 121.7 188 38.3
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 2.6e-25 121.3 224 36.6
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 4.4e-25 120.6 201 39.8
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 5.8e-25 120.2 188 42.0
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 1.3e-24 119.0 224 36.6
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 1.3e-24 119.0 205 38.5
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 1.3e-24 119.0 196 37.2
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.7e-24 118.6 163 41.1
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 2.2e-24 118.2 219 38.4
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 2.2e-24 118.2 208 37.5
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 2.9e-24 117.9 199 40.7
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 2.9e-24 117.9 222 37.4
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 2.9e-24 117.9 190 40.5
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 3.7e-24 117.5 170 40.0
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 3.7e-24 117.5 212 36.3
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 4.9e-24 117.1 190 38.4
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 4.9e-24 117.1 211 38.4
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 8.3e-24 116.3 162 42.6
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 1.4e-23 115.5 201 38.8
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 3.2e-23 114.4 210 38.1
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 3.2e-23 114.4 232 35.3
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 9.2e-23 112.8 190 38.4
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 1.6e-22 112.1 183 40.4
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 2.7e-22 111.3 169 40.2
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 3.5e-22 110.9 186 39.2
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 3.5e-22 110.9 186 39.2
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 6.0e-22 110.2 243 32.9
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 7.8e-22 109.8 191 39.3
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 1.3e-21 109.0 186 39.2
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.7e-21 108.6 185 39.5
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 3.0e-21 107.8 185 38.9
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 3.9e-21 107.5 186 38.7
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 3.9e-21 107.5 192 38.5
EL10Ac6g14755 Beta vulgaris HOM05D000249 ORTHO05D000206 1.1e-20 105.9 147 43.5
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 1.5e-20 105.5 191 39.3
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 2.5e-20 104.8 184 38.6
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 4.7e-19 100.5 114 50.9
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 1.8e-18 98.6 114 50.0
Oeu051440.2 Olea europaea HOM05D006080 ORTHO05D007382 6.8e-18 96.7 54 74.1
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 7.5e-17 93.2 116 43.1
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 9.9e-17 92.8 154 40.3
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 6.4e-16 90.1 108 49.1
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 8.3e-16 89.7 113 42.5
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 1.1e-15 89.4 108 49.1
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 1.4e-15 89.0 132 41.7
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 1.9e-15 88.6 123 40.7
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 1.9e-15 88.6 109 48.6
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 4.1e-15 87.4 107 48.6
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 7.1e-15 86.7 179 33.5
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 9.2e-15 86.3 109 45.0
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 1.2e-14 85.9 107 43.9
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 2.1e-14 85.1 101 45.5
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 3.5e-14 84.3 90 47.8
Zm00001eb081680 Zea mays HOM05D006080 ORTHO05D007382 1.1e-12 79.3 136 55.9
Zm00001eb423410 Zea mays HOM05D006080 ORTHO05D007382 1.6e-11 75.5 136 55.1
Os04g0446100 Oryza sativa ssp. japonica HOM05D006080 ORTHO05D007382 8.1e-11 73.2 454 51.3
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 1.8e-10 72.0 211 27.5
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.4e-10 71.6 111 37.8
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 5.2e-10 70.5 247 29.1
Oeu032648.1 Olea europaea HOM05D006080 ORTHO05D007382 2.0e-09 68.6 39 71.8
Cc09_g05030 Coffea canephora HOM05D007155 ORTHO05D003034 2.2e-08 65.1 165 25.5
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 3.8e-08 64.3 258 24.0
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 4.2e-07 60.8 172 28.5
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 9.2e-07 59.7 226 24.3
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.1e-06 58.5 184 26.6
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 2.1e-06 58.5 184 26.6
VMungo1215G0866 Vigna mungo HOM05D000015 ORTHO05D007382 2.7e-06 58.2 51 54.9
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 3.5e-06 57.8 186 25.8
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 6.0e-06 57.0 118 28.0
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 7.8e-06 56.6 223 25.1
Glyma.01G073500 Glycine max HOM05D000104 ORTHO05D009920 7.8e-06 56.6 102 34.3
Oeu046920.2 Olea europaea HOM05D007155 ORTHO05D003034 7.8e-06 56.6 159 23.3
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 7.8e-06 56.6 183 25.1
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 7.8e-06 56.6 184 27.2


User provided reference genes

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