Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 1.2e-233 813.9 868 100.0
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 3.5e-145 520.0 867 80.9
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 8.9e-141 505.4 873 82.5
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 8.4e-115 419.1 855 79.4
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 2.0e-108 397.9 879 75.1
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 2.3e-96 357.8 880 75.5
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 2.6e-92 344.4 874 73.8
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.3e-91 342.0 877 63.3
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.2e-91 341.3 874 75.1
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 6.5e-91 339.7 870 74.3
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 3.2e-90 337.4 866 71.4
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 1.1e-87 328.9 862 75.1
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 1.5e-84 318.5 867 73.2
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.7e-83 315.1 878 71.0
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 2.2e-83 314.7 872 70.4
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 3.2e-82 310.8 868 66.9
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 3.9e-80 303.9 876 72.3
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 5.7e-79 300.1 876 71.9
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 3.7e-78 297.4 869 69.5
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 1.4e-77 295.4 886 70.2
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 5.3e-77 293.5 876 67.8
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 3.4e-76 290.8 876 68.3
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 4.5e-76 290.4 869 73.3
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 5.0e-75 287.0 876 71.7
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 2.5e-74 284.6 877 65.2
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 3.2e-74 284.3 872 71.6
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.2e-73 282.3 864 72.3
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.1e-73 281.6 831 74.6
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 2.3e-72 278.1 878 65.6
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 2.3e-72 278.1 869 71.5
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.3e-72 278.1 864 72.1
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 2.3e-72 278.1 872 72.2
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 3.0e-72 277.7 858 67.9
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 3.0e-72 277.7 381 72.4
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 3.9e-72 277.3 875 68.6
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 3.9e-72 277.3 874 70.5
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 1.1e-71 275.8 864 72.1
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.0e-71 275.0 831 74.5
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 3.3e-71 274.2 864 72.6
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 1.7e-70 271.9 874 71.9
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 2.2e-70 271.6 878 71.9
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 2.2e-70 271.6 383 71.3
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 4.8e-70 270.4 863 71.3
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 1.4e-69 268.9 872 68.2
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 5.3e-69 266.9 868 71.1
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 5.3e-69 266.9 869 64.0
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 2.1e-65 255.0 876 64.5
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 2.1e-65 255.0 884 58.5
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 2.3e-64 251.5 870 70.9
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 2.3e-64 251.5 877 68.2
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 8.8e-64 249.6 440 58.0
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 2.6e-63 248.1 872 68.9
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 5.7e-63 246.9 841 68.1
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 2.8e-62 244.6 869 67.8
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 3.7e-62 244.2 367 71.1
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 4.8e-62 243.8 874 68.1
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.2e-60 239.2 872 68.8
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 5.9e-60 236.9 864 61.2
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 1.7e-59 235.3 367 70.6
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 2.2e-59 235.0 881 65.0
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 2.2e-59 235.0 802 73.2
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.8e-59 234.2 881 61.0
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 4.2e-58 230.7 874 69.0
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 4.2e-58 230.7 874 67.4
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 3.6e-57 227.6 874 67.4
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 6.1e-57 226.9 874 67.3
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 1.8e-56 225.3 874 67.3
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 2.3e-56 224.9 381 65.1
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 4.0e-56 224.2 381 65.4
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 6.7e-56 223.4 868 68.5
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.5e-55 222.2 872 62.0
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 1.5e-55 222.2 872 62.0
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 2.6e-55 221.5 885 58.5
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 3.3e-55 221.1 860 67.9
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 1.7e-54 218.8 873 66.6
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 5.3e-53 213.8 866 66.1
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.5e-52 211.1 363 67.5
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 4.5e-52 210.7 367 65.9
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 4.5e-52 210.7 869 61.3
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 6.5e-51 206.8 819 70.1
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 8.5e-51 206.5 196 52.6
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 1.5e-50 205.7 868 67.2
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 2.5e-50 204.9 841 57.9
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 3.7e-46 191.0 784 73.9
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 5.9e-44 183.7 833 65.4
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 1.1e-42 179.5 167 52.7
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 1.9e-42 178.7 871 61.1
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 1.6e-41 175.6 186 47.8
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 8.0e-41 173.3 874 64.9
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 8.0e-41 173.3 381 62.7
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 1.2e-39 169.5 185 43.2
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 9.2e-37 159.8 373 59.2
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 1.2e-36 159.5 372 60.5
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 5.9e-36 157.1 882 50.8
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 5.0e-35 154.1 862 60.3
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 2.1e-33 148.7 182 46.7
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 5.2e-32 144.1 381 54.6
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 2.6e-31 141.7 379 57.8
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 4.1e-29 134.4 392 56.4
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 6.2e-25 120.6 149 42.3
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 1.4e-21 109.4 107 56.1
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 9.2e-21 106.7 65 73.8
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 5.1e-19 100.9 191 34.6
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 8.9e-16 90.1 136 36.8
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 6.0e-12 77.4 121 41.3
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.7e-11 75.9 101 43.6
SEGI_20674 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 1.6e-09 69.3 67 50.7
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 4.0e-08 64.7 64 51.6
SEGI_28621 Sequoiadendron giganteum HOM05D007101 ORTHO05D008632 1.5e-07 62.8 145 29.7
Gohir.D08G018400 Gossypium hirsutum HOM05D007402 ORTHO05D003673 9.9e-07 60.1 165 24.8
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 1.3e-06 59.7 171 25.7
ClCG07G012740 Citrullus lanatus HOM05D006819 ORTHO05D008763 1.3e-06 59.7 142 28.2
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 1.7e-06 59.3 109 34.9
Gohir.A08G008400 Gossypium hirsutum HOM05D007402 ORTHO05D003673 2.2e-06 58.9 165 23.6
Gorai.004G012900 Gossypium raimondii HOM05D007402 ORTHO05D003673 2.2e-06 58.9 165 24.2
Nn7g37996 Nelumbo nucifera HOM05D007402 ORTHO05D003673 2.9e-06 58.5 165 24.8
CsaV3_4G001460 Cucumis sativus L. HOM05D006819 ORTHO05D008763 3.8e-06 58.2 145 30.3
Psat4g140040 Pisum sativum HOM05D002453 ORTHO05D008746 3.8e-06 58.2 196 30.1
EL10Ac2g03759 Beta vulgaris HOM05D007251 ORTHO05D009266 8.4e-06 57.0 103 30.1
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 8.4e-06 57.0 102 32.4
MELO3C017894.2 Cucumis melo HOM05D006819 ORTHO05D008763 8.4e-06 57.0 142 27.5
Sed0026792 Sechium edule HOM05D006819 ORTHO05D008763 8.4e-06 57.0 151 28.5
SMO361G0319 Selaginella moellendorffii HOM05D005362 ORTHO05D010796 8.4e-06 57.0 92 31.5


User provided reference genes

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