Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 3.0e-120 435.3 234 100.0
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.9e-45 186.8 270 49.6
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 1.2e-39 167.5 189 56.6
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 4.5e-39 165.6 251 47.8
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 5.9e-39 165.2 240 50.4
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 4.8e-33 145.6 236 45.8
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 3.2e-29 132.9 229 44.1
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 4.4e-26 122.5 263 41.4
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 1.6e-23 114.0 221 44.8
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 2.0e-23 113.6 231 39.4
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.2e-22 110.2 256 39.8
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 2.2e-22 110.2 231 41.1
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.2e-22 110.2 224 40.6
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.2e-22 110.2 233 41.2
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.9e-22 109.8 237 39.2
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 3.8e-22 109.4 233 40.8
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 5.0e-22 109.0 243 38.3
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-21 107.5 221 40.3
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 2.5e-21 106.7 210 40.5
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 2.5e-21 106.7 229 42.8
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 4.2e-21 105.9 231 39.8
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 4.2e-21 105.9 224 39.3
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 4.2e-21 105.9 193 44.6
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.5e-21 105.5 221 39.8
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 5.5e-21 105.5 215 40.5
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.5e-21 105.5 234 38.9
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 5.5e-21 105.5 223 41.7
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 7.2e-21 105.1 207 40.6
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 9.4e-21 104.8 232 38.8
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.1e-20 103.6 233 40.3
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.1e-20 103.6 233 40.3
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 4.7e-20 102.4 227 40.1
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.8e-19 100.5 242 38.4
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.3e-19 100.1 249 37.8
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 4.0e-19 99.4 201 41.3
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 4.0e-19 99.4 224 38.4
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 5.2e-19 99.0 224 38.4
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 6.8e-19 98.6 221 35.7
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 8.8e-19 98.2 227 39.6
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 8.8e-19 98.2 200 42.0
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.2e-18 97.8 224 38.4
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.2e-18 97.8 220 36.8
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.5e-18 97.4 198 42.9
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.5e-18 97.4 225 37.8
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.4e-18 95.9 205 37.1
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.4e-18 95.9 224 37.5
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.7e-18 95.5 231 37.7
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 7.5e-18 95.1 221 37.6
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 9.8e-18 94.7 255 38.0
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 1.3e-17 94.4 210 39.5
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.7e-17 94.0 211 39.8
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 2.8e-17 93.2 198 42.4
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 3.7e-17 92.8 218 38.5
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 4.8e-17 92.4 235 40.4
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 6.3e-17 92.0 219 35.6
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.4e-16 90.9 243 35.0
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.4e-16 90.9 222 40.1
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.8e-16 90.5 202 41.6
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 3.1e-16 89.7 233 39.5
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 3.1e-16 89.7 209 37.3
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 4.1e-16 89.4 214 38.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 7.0e-16 88.6 221 36.7
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 7.0e-16 88.6 254 35.0
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.7e-15 86.7 163 39.9
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.7e-15 86.7 199 36.2
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.5e-15 86.3 231 37.7
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.0e-14 84.7 231 39.0
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.0e-14 84.7 242 36.4
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.7e-14 84.0 255 35.3
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.7e-14 84.0 88 59.1
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.9e-14 83.2 131 46.6
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.9e-14 83.2 131 46.6
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.9e-14 83.2 126 46.0
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.9e-14 83.2 131 46.6
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 6.5e-14 82.0 221 36.2
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-13 80.5 126 45.2
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 3.2e-13 79.7 214 35.0
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 4.2e-13 79.3 183 35.5
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 7.2e-13 78.6 198 35.9
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 7.2e-13 78.6 206 35.9
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.2e-12 77.8 188 36.7
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.2e-12 77.8 213 37.6
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.6e-12 77.4 200 37.5
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.8e-12 76.6 194 41.8
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.8e-12 76.6 113 49.6
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 6.1e-12 75.5 186 37.6
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.0e-11 74.7 194 34.0
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.4e-11 74.3 66 63.6
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 2.6e-10 70.1 187 35.8
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 4.4e-10 69.3 83 51.8
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 5.7e-10 68.9 199 35.7
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 5.7e-10 68.9 83 51.8
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 5.7e-10 68.9 142 40.8
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 9.8e-10 68.2 78 52.6
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.7e-09 67.4 90 50.0
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 1.7e-09 67.4 188 32.4
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.8e-09 66.6 214 34.1
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 2.8e-09 66.6 220 34.1
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 2.8e-09 66.6 214 34.6
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 3.7e-09 66.2 243 30.5
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 3.7e-09 66.2 240 31.2
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.9e-09 65.9 235 32.3
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.4e-08 64.3 215 31.2
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.4e-08 64.3 68 55.9
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 3.1e-08 63.2 143 34.3
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.1e-08 63.2 51 70.6
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 5.4e-08 62.4 152 38.2
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.2e-08 61.6 51 68.6
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.2e-07 61.2 51 68.6
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.6e-07 60.8 82 48.8
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.6e-07 60.8 123 41.5
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 2.7e-07 60.1 187 34.2
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 3.5e-07 59.7 154 37.7
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 4.5e-07 59.3 82 47.6
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 4.5e-07 59.3 113 40.7
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 7.8e-07 58.5 179 33.0
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.3e-06 57.8 105 41.9
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 2.9e-06 56.6 68 47.1
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 3.8e-06 56.2 65 50.8
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 6.6e-06 55.5 223 30.5
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 8.6e-06 55.1 76 42.1


User provided reference genes

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