Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 5.2e-88 328.2 232 100.0
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 5.6e-74 281.6 230 82.2
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 4.7e-73 278.5 230 80.0
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 3.7e-70 268.9 227 75.8
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 4.9e-70 268.5 229 78.2
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 4.9e-70 268.5 227 74.0
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 4.9e-70 268.5 229 70.7
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 6.4e-70 268.1 229 75.1
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 1.4e-69 266.9 228 77.6
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 1.4e-69 266.9 229 75.1
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 1.9e-69 266.5 229 71.6
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.9e-69 266.5 228 80.7
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.2e-69 265.8 229 78.6
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 3.2e-69 265.8 229 78.6
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 5.4e-69 265.0 228 73.7
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 7.1e-69 264.6 228 73.2
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 1.2e-68 263.8 228 79.4
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 1.6e-68 263.5 227 69.6
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 2.1e-68 263.1 230 73.9
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 4.6e-68 261.9 230 73.9
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 4.6e-68 261.9 227 71.4
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 4.6e-68 261.9 229 74.2
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 7.8e-68 261.2 229 73.8
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 1.0e-67 260.8 228 71.5
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 3.0e-67 259.2 226 73.0
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 6.6e-67 258.1 228 83.3
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 8.6e-67 257.7 229 72.5
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 8.6e-67 257.7 228 74.6
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 8.6e-67 257.7 229 65.1
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 1.5e-66 256.9 229 70.7
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 2.5e-66 256.1 229 66.4
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 2.5e-66 256.1 229 78.2
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 3.3e-66 255.8 228 59.6
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.3e-66 255.4 229 79.9
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 5.6e-66 255.0 228 76.3
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 5.6e-66 255.0 229 72.5
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 7.3e-66 254.6 232 80.2
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.6e-65 253.4 232 80.2
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 8.1e-65 251.1 230 71.3
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.1e-64 250.8 225 77.8
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 1.4e-64 250.4 229 72.5
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 1.8e-64 250.0 230 76.1
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 2.4e-64 249.6 226 77.4
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.0e-64 248.8 229 78.6
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 5.2e-64 248.4 222 80.6
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 6.8e-64 248.1 229 72.1
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 8.9e-64 247.7 230 77.8
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 4.4e-63 245.4 229 75.1
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 4.4e-63 245.4 229 78.2
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 5.8e-63 245.0 228 64.9
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 7.6e-63 244.6 230 68.7
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.7e-62 243.4 230 68.3
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 1.7e-62 243.4 226 69.0
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.9e-62 242.7 227 77.5
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 4.9e-62 241.9 226 75.2
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 6.4e-62 241.5 229 77.7
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 3.2e-61 239.2 228 71.5
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 3.2e-61 239.2 227 71.8
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 5.4e-61 238.4 245 70.2
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 7.1e-61 238.0 228 71.9
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 9.2e-61 237.7 226 73.9
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.6e-60 236.9 229 75.5
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 6.0e-60 235.0 229 70.7
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 1.3e-59 233.8 227 69.6
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 5.1e-59 231.9 229 69.9
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.1e-58 230.7 229 75.5
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 1.5e-58 230.3 229 77.7
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 2.5e-58 229.6 248 66.1
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 3.3e-58 229.2 234 64.1
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 4.3e-58 228.8 228 71.1
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 9.6e-58 227.6 229 72.9
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 2.1e-57 226.5 229 70.7
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 3.6e-57 225.7 229 67.2
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 4.7e-57 225.3 229 74.7
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 4.7e-57 225.3 228 70.6
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 8.1e-57 224.6 229 72.1
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 8.1e-57 224.6 258 65.9
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 1.4e-56 223.8 228 75.4
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 4.0e-56 222.2 230 74.3
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 5.2e-56 221.9 227 77.5
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 1.2e-55 220.7 228 73.7
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 1.5e-55 220.3 232 72.0
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 2.6e-55 219.5 228 74.6
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 2.6e-55 219.5 331 58.3
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 3.4e-55 219.2 226 64.6
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 4.4e-55 218.8 229 72.5
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 1.7e-54 216.9 236 69.5
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 8.4e-54 214.5 227 77.1
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 4.2e-53 212.2 226 76.5
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 9.3e-53 211.1 226 76.1
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.2e-52 210.7 226 75.7
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 2.1e-52 209.9 227 54.6
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 3.0e-51 206.1 228 65.8
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 8.7e-51 204.5 230 53.0
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 5.6e-50 201.8 228 63.6
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 4.8e-49 198.7 229 72.5
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 8.1e-49 198.0 223 50.2
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 4.0e-48 195.7 230 58.7
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 6.9e-48 194.9 226 56.2
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 9.0e-48 194.5 226 52.2
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 9.0e-48 194.5 154 66.2
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 2.6e-47 193.0 226 70.4
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 8.4e-46 188.0 230 60.4
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 1.1e-45 187.6 229 68.1
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 1.9e-45 186.8 226 70.8
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.4e-45 186.4 228 57.9
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 4.2e-45 185.7 228 57.9
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 9.3e-45 184.5 211 72.0
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 1.2e-44 184.1 226 65.9
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 1.2e-44 184.1 226 65.9
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.3e-43 180.6 228 53.5
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 1.8e-43 180.3 226 65.9
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 3.9e-43 179.1 226 65.5
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.5e-42 177.2 226 55.8
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 1.5e-42 177.2 231 58.9
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 2.2e-38 163.3 99 77.8
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 8.7e-35 151.4 188 62.8
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 3.2e-29 132.9 226 49.6
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 6.7e-27 125.2 65 87.7
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.1e-26 124.4 231 39.4
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.2e-25 120.2 231 38.1
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 3.7e-25 119.4 79 73.4
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 2.9e-22 109.8 225 36.9
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 8.5e-22 108.2 68 76.5
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 1.6e-20 104.0 96 55.2
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 3.9e-19 99.4 233 43.8
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 3.9e-19 99.4 229 31.4
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 5.0e-14 82.4 156 37.2
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 4.8e-09 65.9 40 77.5
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 8.5e-06 55.1 80 37.5


User provided reference genes

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