Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 1.2e-230 803.1 484 100.0
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 2.3e-106 390.2 452 47.8
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 1.5e-105 387.5 433 56.6
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 2.0e-102 377.1 455 45.1
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 3.6e-99 366.3 453 55.6
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 8.6e-93 345.1 440 43.6
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 1.5e-92 344.4 453 42.6
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.4e-90 337.8 436 41.7
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.4e-90 337.8 436 41.7
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 1.7e-88 330.9 455 40.7
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 1.7e-88 330.9 443 40.9
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 6.4e-88 328.9 435 42.1
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 9.2e-87 325.1 437 54.5
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 2.0e-86 323.9 437 54.2
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 2.7e-86 323.6 440 54.1
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 7.8e-86 322.0 451 41.2
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 1.0e-85 321.6 440 53.2
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.0e-85 321.6 437 53.5
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 1.3e-85 321.2 470 40.2
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 2.3e-85 320.5 446 38.8
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 5.0e-85 319.3 456 38.6
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 6.6e-85 318.9 448 39.5
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 1.1e-84 318.2 434 40.6
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.1e-84 318.2 430 48.8
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 1.9e-84 317.4 471 51.2
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 3.3e-84 316.6 463 39.7
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 7.3e-84 315.5 452 39.4
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.2e-83 314.7 452 39.2
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 2.1e-83 313.9 434 41.0
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 1.1e-82 311.6 439 39.0
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 8.9e-82 308.5 438 40.2
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.5e-81 307.8 454 37.4
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 3.4e-81 306.6 434 47.2
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 7.5e-81 305.4 442 39.6
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 1.7e-80 304.3 451 37.3
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 2.2e-80 303.9 450 46.4
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 2.2e-80 303.9 453 38.0
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 2.2e-80 303.9 432 36.1
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.9e-79 300.8 434 37.8
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 1.9e-79 300.8 487 37.0
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 2.4e-79 300.4 438 39.3
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 5.4e-79 299.3 434 37.6
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 4.6e-78 296.2 452 37.6
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 1.3e-77 294.7 437 38.0
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 1.7e-77 294.3 440 38.0
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 3.9e-77 293.1 434 37.6
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 3.9e-77 293.1 466 37.3
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.9e-76 290.8 434 37.6
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 2.5e-76 290.4 430 38.4
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 4.3e-76 289.7 437 38.0
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 7.3e-76 288.9 437 37.8
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.2e-75 288.1 437 42.1
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 3.6e-75 286.6 434 38.9
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 4.7e-75 286.2 434 38.9
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 4.7e-75 286.2 460 45.0
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 4.7e-75 286.2 450 36.9
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 1.1e-74 285.0 433 37.9
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 2.3e-74 283.9 434 37.6
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 5.2e-74 282.7 479 35.9
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 6.8e-74 282.3 433 37.6
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 6.8e-74 282.3 433 37.6
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 1.2e-73 281.6 432 36.8
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 1.2e-73 281.6 432 36.8
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 2.6e-73 280.4 443 37.2
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 3.4e-73 280.0 433 38.1
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 5.8e-73 279.3 456 37.7
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 2.2e-72 277.3 433 37.4
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 6.4e-72 275.8 433 37.6
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 1.1e-71 275.0 481 33.9
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 2.4e-71 273.9 453 35.1
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 1.2e-70 271.6 434 36.6
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 6.0e-70 269.2 480 46.2
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 6.6e-69 265.8 458 34.7
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 5.6e-68 262.7 458 46.3
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 1.2e-67 261.5 432 44.0
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 3.6e-67 260.0 463 34.3
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 3.1e-66 256.9 435 35.4
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 2.0e-65 254.2 437 36.6
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 2.0e-65 254.2 433 42.5
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 3.4e-65 253.4 438 35.4
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 5.8e-65 252.7 446 43.9
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 2.2e-64 250.8 433 36.7
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 5.4e-63 246.1 438 46.1
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 7.8e-62 242.3 433 34.4
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 1.5e-60 238.0 473 32.8
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 3.3e-60 236.9 373 36.2
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 3.1e-58 230.3 373 37.5
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 4.4e-57 226.5 369 36.3
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 3.6e-51 206.8 439 39.4
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 3.8e-48 196.8 460 29.8
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 1.1e-42 178.7 323 35.0
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 1.4e-42 178.3 235 42.1
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.2e-41 175.3 452 29.2
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 3.0e-37 160.6 308 32.5
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 3.3e-36 157.1 248 35.5
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 2.1e-35 154.5 448 26.3
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.7e-32 144.8 220 36.8
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.2e-32 144.4 147 46.9
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 4.6e-30 136.7 151 44.4
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 8.7e-29 132.5 422 26.8
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 2.8e-27 127.5 215 37.2
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.6e-22 110.5 141 42.6
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 5.1e-21 106.7 228 34.2
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 5.9e-17 93.2 194 30.4
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 5.9e-17 93.2 458 25.3
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.3e-16 92.0 147 34.7
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 2.3e-13 81.3 108 39.8
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 4.8e-11 73.6 108 35.2
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 4.8e-11 73.6 108 35.2
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 1.4e-10 72.0 120 30.8
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 3.1e-10 70.9 168 28.6
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 5.3e-10 70.1 156 30.1
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 3.8e-08 63.9 97 34.0
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 3.8e-08 63.9 108 36.1
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 1.9e-07 61.6 98 30.6
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 4.2e-07 60.5 148 31.1
AL2G34640 Arabidopsis lyrata HOM05D004079 ORTHO05D005437 7.2e-07 59.7 98 34.7
Carub.0002s2154 Capsella rubella HOM05D004079 ORTHO05D005437 7.2e-07 59.7 98 34.7
A08p30100 Brassica napus HOM05D004079 ORTHO05D005437 9.4e-07 59.3 97 33.0
BraA08t34945Z Brassica rapa HOM05D004079 ORTHO05D005437 9.4e-07 59.3 97 33.0
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 1.2e-06 58.9 97 32.0
AT1G74750 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 1.2e-06 58.9 98 33.7
SGA_v2.0_scaffold56G20067 Striga asiatica HOM05D004079 ORTHO05D005437 1.2e-06 58.9 95 34.7
BcaB02g06965 Brassica carinata HOM05D004079 ORTHO05D005437 1.6e-06 58.5 99 33.3
BcaB03g12947 Brassica carinata HOM05D004079 ORTHO05D005437 1.6e-06 58.5 97 33.0
A07p29240 Brassica napus HOM05D004079 ORTHO05D005437 1.6e-06 58.5 99 33.3
C06p33140 Brassica napus HOM05D004079 ORTHO05D005437 1.6e-06 58.5 99 33.3
BolC6t38429H Brassica oleracea HOM05D004079 ORTHO05D005437 1.6e-06 58.5 99 33.3
BraA07t30563Z Brassica rapa HOM05D004079 ORTHO05D005437 1.6e-06 58.5 99 33.3
Ciclev10018829m.g Citrus clementina HOM05D004079 ORTHO05D005437 2.1e-06 58.2 97 33.0
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 2.1e-06 58.2 109 33.0
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 2.7e-06 57.8 74 39.2
C08p19050 Brassica napus HOM05D004079 ORTHO05D005437 2.7e-06 57.8 97 32.0
BolC8t49530H Brassica oleracea HOM05D004079 ORTHO05D005437 2.7e-06 57.8 97 32.0
Thhalv10009547m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 2.7e-06 57.8 98 34.7
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 2.7e-06 57.8 103 34.0
Cpa.g.sc17.195 Carica papaya HOM05D004079 ORTHO05D005437 4.7e-06 57.0 97 32.0
Sp5g29870 Schrenkiella parvula HOM05D004079 ORTHO05D005437 4.7e-06 57.0 98 33.7
Aa31LG7G3680 Aethionema arabicum HOM05D004079 ORTHO05D005437 6.1e-06 56.6 97 34.0
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 8.0e-06 56.2 153 26.1
BcaB03g14475 Brassica carinata HOM05D004079 ORTHO05D005437 8.0e-06 56.2 97 30.9
BcaC07g38966 Brassica carinata HOM05D004079 ORTHO05D005437 8.0e-06 56.2 97 30.9


User provided reference genes

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