Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13300 Striga asiatica HOM05D028864 ORTHO05D009044 0.0e+00 1108.6 535 100.0
SGA_v2.0_scaffold32G13296 Striga asiatica HOM05D028864 ORTHO05D009044 5.9e-228 794.3 543 75.7
SGA_v2.0_scaffold32G13304 Striga asiatica HOM05D028864 ORTHO05D009044 1.2e-159 567.4 499 62.9
Haze_02114 Corylus avellana HOM05D007346 ORTHO05D009044 2.3e-30 137.9 449 27.8
Cfa005279 Carpinus fangiana HOM05D007346 ORTHO05D009044 6.7e-30 136.3 451 26.4
Cfa005319 Carpinus fangiana HOM05D007346 ORTHO05D009044 1.5e-29 135.2 446 26.5
SGA_v2.0_scaffold58G20348 Striga asiatica HOM05D028864 ORTHO05D009044 3.3e-29 134.0 195 43.6
FvH4_4g01970 Fragaria vesca HOM05D007346 ORTHO05D009044 1.3e-28 132.1 483 26.3
FAN12G2737 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.2e-28 131.3 312 30.8
FvH4_4g01590 Fragaria vesca HOM05D007346 ORTHO05D009044 8.2e-28 129.4 312 30.8
FAN12G0105 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.4e-27 128.6 483 26.1
FvH4_4g02090 Fragaria vesca HOM05D007346 ORTHO05D009044 2.9e-25 120.9 221 33.9
Cfa005278 Carpinus fangiana HOM05D007346 ORTHO05D009044 5.0e-25 120.2 305 30.8
Haze_02115 Corylus avellana HOM05D007346 ORTHO05D009044 8.5e-25 119.4 460 26.5
FAN20G2910 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.9e-24 118.2 459 25.1
RcHm_v2.0_Chr5g0063131 Rosa chinensis HOM05D007346 ORTHO05D009044 3.6e-23 114.0 514 24.7
Prupe.8G152400 Prunus persica HOM05D007346 ORTHO05D009044 7.9e-23 112.8 489 23.3
RcHm_v2.0_Chr4g0393001 Rosa chinensis HOM05D007346 ORTHO05D009044 7.9e-23 112.8 319 28.8
RcHm_v2.0_Chr4g0393391 Rosa chinensis HOM05D007346 ORTHO05D009044 1.0e-22 112.5 317 30.0
Duzib132G1061 Durio zibethinus HOM05D007346 ORTHO05D009044 1.4e-22 112.1 455 26.4
FvH4_4g02080 Fragaria vesca HOM05D007346 ORTHO05D009044 1.4e-22 112.1 280 29.3
RcHm_v2.0_Chr4g0388171 Rosa chinensis HOM05D007346 ORTHO05D009044 6.7e-22 109.8 313 27.2
FAN21G1548 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.1e-21 109.0 390 26.7
Duzib116G0495 Durio zibethinus HOM05D000151 ORTHO05D000074 5.3e-19 100.1 391 27.4
FAN25G0093 Fragaria x ananassa HOM05D007346 ORTHO05D009044 5.3e-19 100.1 230 29.6
RcHm_v2.0_Chr6g0247891 Rosa chinensis HOM05D007346 ORTHO05D009044 6.9e-19 99.8 241 29.5
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 1.2e-18 99.0 393 26.5
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.5e-18 98.6 317 27.1
RcHm_v2.0_Chr4g0393471 Rosa chinensis HOM05D007346 ORTHO05D009044 2.6e-18 97.8 300 29.0
Prupe.8G151600 Prunus persica HOM05D007346 ORTHO05D009044 1.7e-17 95.1 227 26.9
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 3.8e-17 94.0 396 27.3
RcHm_v2.0_Chr6g0254631 Rosa chinensis HOM05D007346 ORTHO05D009044 3.8e-17 94.0 230 27.4
Dinv39566 Davidia involucrata HOM05D000151 ORTHO05D000074 6.5e-17 93.2 402 25.6
FAN18G1252 Fragaria x ananassa HOM05D007346 ORTHO05D009044 6.5e-17 93.2 381 26.2
FvH4_2g04880 Fragaria vesca HOM05D007346 ORTHO05D009044 1.1e-16 92.4 236 28.0
FAN24G1006 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.1e-16 92.4 236 28.0
FvH4_2g03062 Fragaria vesca HOM05D007346 ORTHO05D009044 1.9e-16 91.7 222 30.2
Cfa012527 Carpinus fangiana HOM05D007346 ORTHO05D009044 2.5e-16 91.3 482 24.9
RcHm_v2.0_Chr6g0254611 Rosa chinensis HOM05D007346 ORTHO05D009044 3.2e-16 90.9 230 27.0
FAN24G2319 Fragaria x ananassa HOM05D007346 ORTHO05D009044 5.5e-16 90.1 222 30.2
Gohir.D05G281400 Gossypium hirsutum HOM05D007346 ORTHO05D009044 1.2e-15 89.0 452 23.5
Manes.05G141800 Manihot esculenta HOM05D000151 ORTHO05D000074 3.6e-15 87.4 210 27.1
Gorai.009G294900 Gossypium raimondii HOM05D007346 ORTHO05D009044 6.1e-15 86.7 448 23.9
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.1e-15 86.7 222 31.1
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.1e-15 86.7 222 31.1
CANSAT25G2327 Cannabis sativa HOM05D000151 ORTHO05D000074 2.3e-14 84.7 385 25.2
Duzib248G1625 Durio zibethinus HOM05D007346 ORTHO05D009044 3.0e-14 84.3 415 23.9
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 3.9e-14 84.0 401 25.4
FvH4_4g04480 Fragaria vesca HOM05D000151 ORTHO05D000074 5.1e-14 83.6 449 24.9
COL.COLO4_26063 Corchorus olitorius HOM05D000151 ORTHO05D000074 8.8e-14 82.8 382 26.7
RcHm_v2.0_Chr6g0254551 Rosa chinensis HOM05D007346 ORTHO05D009044 8.8e-14 82.8 222 28.4
RcHm_v2.0_Chr6g0303821 Rosa chinensis HOM05D000151 ORTHO05D000074 1.1e-13 82.4 390 24.4
FvH4_4g01551 Fragaria vesca HOM05D007346 ORTHO05D009044 1.5e-13 82.0 233 27.0
Gorai.009G294800 Gossypium raimondii HOM05D007346 ORTHO05D009044 1.5e-13 82.0 248 28.2
PSO170G4594 Papaver somniferum HOM05D000151 ORTHO05D000074 2.0e-13 81.6 435 23.4
Gohir.A05G279800 Gossypium hirsutum HOM05D007346 ORTHO05D009044 2.6e-13 81.3 218 28.9
FAN12G2073 Fragaria x ananassa HOM05D004442 ORTHO05D002066 4.4e-13 80.5 460 25.4
CiPaw.08G070000 Carya illinoinensis HOM05D000151 ORTHO05D000074 5.7e-13 80.1 394 24.9
PGR031G1698 Punica granatum HOM05D000151 ORTHO05D000074 5.7e-13 80.1 388 25.5
Aqoxy2G03785 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 7.4e-13 79.7 227 28.2
Aqoxy5G02614 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 9.7e-13 79.3 227 28.6
MELO3C017000.2 Cucumis melo HOM05D000151 ORTHO05D000074 9.7e-13 79.3 397 26.7
FvH4_2g03731 Fragaria vesca HOM05D007346 ORTHO05D009044 1.3e-12 79.0 237 28.3
Sabra03G0128000 Salix brachista HOM05D015619 ORTHO05D009044 1.3e-12 79.0 429 22.8
FAN12G4018 Fragaria x ananassa HOM05D017087 ORTHO05D019163 1.7e-12 78.6 264 27.3
FAN24G3266 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.7e-12 78.6 220 28.2
RcHm_v2.0_Chr4g0395201 Rosa chinensis HOM05D000151 ORTHO05D000074 2.2e-12 78.2 442 24.9
Ciclev10030189m.g Citrus clementina HOM05D007346 ORTHO05D009044 2.8e-12 77.8 266 24.4
RcHm_v2.0_Chr6g0254681 Rosa chinensis HOM05D007346 ORTHO05D009044 2.8e-12 77.8 271 26.2
FAN17G0274 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.8e-12 77.0 314 24.5
FvH4_2g16551 Fragaria vesca HOM05D007346 ORTHO05D009044 6.3e-12 76.6 220 28.2
Aqoxy5G01063 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 8.2e-12 76.3 222 27.0
Aqoxy5G01069 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 8.2e-12 76.3 222 27.0
Glyma.04G019900 Glycine max HOM05D000151 ORTHO05D000074 8.2e-12 76.3 366 26.0
arahy.Tifrunner.gnm1.ann1.PYC0TU Arachis hypogaea HOM05D000151 ORTHO05D000074 1.1e-11 75.9 382 25.4
Eucgr.F03527 Eucalyptus grandis HOM05D000151 ORTHO05D000074 2.4e-11 74.7 246 28.9
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 4.1e-11 73.9 251 25.5
FvH4_2g04271 Fragaria vesca HOM05D007346 ORTHO05D009044 5.3e-11 73.6 235 28.9
Aqoxy2G03786 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 9.1e-11 72.8 227 27.3
FAN15G1511 Fragaria x ananassa HOM05D007346 ORTHO05D009044 9.1e-11 72.8 224 27.2
Aqoxy5G02613 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.2e-10 72.4 238 29.0
MBI12_g28746_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.2e-10 72.4 253 26.5
Prupe.1G358000 Prunus persica HOM05D000151 ORTHO05D000074 1.2e-10 72.4 229 29.3
Cfa014025 Carpinus fangiana HOM05D000151 ORTHO05D000074 1.5e-10 72.0 234 29.9
QL05p064445 Quercus lobata HOM05D000151 ORTHO05D000074 2.6e-10 71.2 467 23.6
MSTRG.6367 Avicennia marina HOM05D000151 ORTHO05D000074 4.5e-10 70.5 219 26.5
FvH4_4g02150 Fragaria vesca HOM05D007346 ORTHO05D009044 5.9e-10 70.1 210 28.6
Lj2C483T3 Lonicera japonica HOM05D000151 ORTHO05D000074 5.9e-10 70.1 237 26.6
Lj2C486T7 Lonicera japonica HOM05D000151 ORTHO05D000074 1.0e-09 69.3 422 23.7
Os08g0164100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.0e-09 69.3 136 34.6
PGSC0003DMG400030538 Solanum tuberosum HOM05D034039 ORTHO05D009044 1.7e-09 68.6 289 23.9
CAN.G1298.26 Capsicum annuum HOM05D034039 ORTHO05D009044 5.0e-09 67.0 330 22.7
FAN15G1755 Fragaria x ananassa HOM05D007346 ORTHO05D009044 5.0e-09 67.0 219 28.8
RcHm_v2.0_Chr3g0452431 Rosa chinensis HOM05D000151 ORTHO05D000074 6.5e-09 66.6 411 24.3
Sabra01G0038800 Salix brachista HOM05D015619 ORTHO05D009044 6.5e-09 66.6 113 34.5
COL.COLO4_05771 Corchorus olitorius HOM05D000151 ORTHO05D000074 8.5e-09 66.2 224 27.7
Os03g0708200 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 8.5e-09 66.2 240 29.6
RcHm_v2.0_Chr4g0388141 Rosa chinensis HOM05D007346 ORTHO05D009044 8.5e-09 66.2 148 31.1
Cc10_g00920 Coffea canephora HOM05D000151 ORTHO05D000074 1.4e-08 65.5 394 24.9
FvH4_2g16550 Fragaria vesca HOM05D007346 ORTHO05D009044 1.4e-08 65.5 219 26.9
Os06g0707300 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.4e-08 65.5 156 32.7
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.4e-08 65.5 230 27.0
Zm00001eb272730 Zea mays HOM05D000151 ORTHO05D000074 1.4e-08 65.5 159 32.7
FAN17G3046 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.5e-08 64.7 80 35.0
Sabra15G0099200 Salix brachista HOM05D015619 ORTHO05D009044 2.5e-08 64.7 375 23.2
Sabra15G0100200 Salix brachista HOM05D015619 ORTHO05D009044 2.5e-08 64.7 375 23.2
FAN14G0584 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.2e-08 64.3 224 27.2
FAN14G2798 Fragaria x ananassa HOM05D006368 ORTHO05D006739 3.2e-08 64.3 224 27.2
Aqoxy2G03783 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.2e-08 63.9 238 28.2
FAN17G1827 Fragaria x ananassa HOM05D000151 ORTHO05D000074 7.2e-08 63.2 233 28.8
MBI19_g33448_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 7.2e-08 63.2 252 23.0
MD03G1012300 Malus domestica HOM05D007346 ORTHO05D009044 9.4e-08 62.8 179 25.7
Os10g0520400 Oryza sativa ssp. japonica HOM05D042905 ORTHO05D000074 1.6e-07 62.0 230 26.1
Zm00001eb250220 Zea mays HOM05D012472 ORTHO05D013904 1.6e-07 62.0 135 35.6
QL02p075077 Quercus lobata HOM05D000151 ORTHO05D017935 2.1e-07 61.6 218 26.6
TPR.G38190 Trifolium pratense HOM05D000151 ORTHO05D000074 2.1e-07 61.6 219 26.5
Thecc.01G383700 Theobroma cacao HOM05D000151 ORTHO05D000074 2.7e-07 61.2 239 28.9
FvH4_5g33551 Fragaria vesca HOM05D007346 ORTHO05D009044 3.6e-07 60.8 177 28.8
Potri.002G015700 Populus trichocarpa HOM05D000151 ORTHO05D000074 4.7e-07 60.5 174 27.6
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 4.7e-07 60.5 113 32.7
TAR629G0126 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.1e-07 60.1 259 28.2
Sabra15G0099600 Salix brachista HOM05D015619 ORTHO05D009044 8.0e-07 59.7 113 32.7
Sabra15G0099900 Salix brachista HOM05D015619 ORTHO05D009044 8.0e-07 59.7 113 32.7
Potri.001G054200 Populus trichocarpa HOM05D015619 ORTHO05D009044 1.0e-06 59.3 115 33.9
TAR626G1713 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.4e-06 58.9 225 26.2
Os04g0162600 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 3.0e-06 57.8 254 26.0
Zm00001eb187050 Zea mays HOM05D012472 ORTHO05D013904 3.0e-06 57.8 142 32.4
Zm00001eb069540 Zea mays HOM05D000151 ORTHO05D000074 6.7e-06 56.6 272 26.1
FAN22G0114 Fragaria x ananassa HOM05D000151 ORTHO05D000074 8.8e-06 56.2 208 25.5


User provided reference genes

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