Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13296 Striga asiatica HOM05D028864 ORTHO05D009044 0.0e+00 1152.9 551 100.0
SGA_v2.0_scaffold32G13300 Striga asiatica HOM05D028864 ORTHO05D009044 4.7e-228 794.7 543 75.7
SGA_v2.0_scaffold32G13304 Striga asiatica HOM05D028864 ORTHO05D009044 9.0e-155 551.2 491 60.9
SGA_v2.0_scaffold58G20348 Striga asiatica HOM05D028864 ORTHO05D009044 1.8e-38 164.9 223 45.7
FvH4_4g01970 Fragaria vesca HOM05D007346 ORTHO05D009044 7.6e-29 132.9 480 26.9
FAN12G2737 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.9e-28 130.2 315 29.2
FAN12G0105 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.9e-27 128.3 480 26.5
FvH4_4g01590 Fragaria vesca HOM05D007346 ORTHO05D009044 4.2e-27 127.1 315 29.2
Cfa005278 Carpinus fangiana HOM05D007346 ORTHO05D009044 3.0e-25 120.9 305 29.8
FAN20G2910 Fragaria x ananassa HOM05D007346 ORTHO05D009044 5.1e-25 120.2 470 26.0
Prupe.8G152400 Prunus persica HOM05D007346 ORTHO05D009044 1.9e-24 118.2 485 23.7
Duzib132G1061 Durio zibethinus HOM05D007346 ORTHO05D009044 2.5e-24 117.9 450 26.0
Haze_02114 Corylus avellana HOM05D007346 ORTHO05D009044 3.3e-24 117.5 457 26.9
FvH4_4g02090 Fragaria vesca HOM05D007346 ORTHO05D009044 4.3e-24 117.1 221 33.9
FvH4_2g04880 Fragaria vesca HOM05D007346 ORTHO05D009044 7.4e-24 116.3 512 23.8
FAN24G1006 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.3e-23 115.5 513 23.8
RcHm_v2.0_Chr5g0063131 Rosa chinensis HOM05D007346 ORTHO05D009044 2.1e-23 114.8 505 25.9
Cfa005279 Carpinus fangiana HOM05D007346 ORTHO05D009044 2.8e-23 114.4 452 26.5
RcHm_v2.0_Chr4g0393391 Rosa chinensis HOM05D007346 ORTHO05D009044 4.8e-23 113.6 322 28.9
Cfa005319 Carpinus fangiana HOM05D007346 ORTHO05D009044 6.2e-23 113.2 447 26.4
Haze_02115 Corylus avellana HOM05D007346 ORTHO05D009044 1.8e-22 111.7 393 25.7
FvH4_4g02080 Fragaria vesca HOM05D007346 ORTHO05D009044 3.1e-22 110.9 230 31.3
Prupe.8G151600 Prunus persica HOM05D007346 ORTHO05D009044 3.1e-22 110.9 488 23.8
RcHm_v2.0_Chr4g0393001 Rosa chinensis HOM05D007346 ORTHO05D009044 5.3e-22 110.2 299 29.1
RcHm_v2.0_Chr6g0247891 Rosa chinensis HOM05D007346 ORTHO05D009044 1.1e-19 102.4 508 24.2
RcHm_v2.0_Chr4g0393471 Rosa chinensis HOM05D007346 ORTHO05D009044 5.5e-19 100.1 302 27.8
FAN25G0093 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.1e-18 98.2 237 31.6
RcHm_v2.0_Chr4g0388171 Rosa chinensis HOM05D007346 ORTHO05D009044 2.7e-18 97.8 315 25.7
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.7e-18 97.8 235 31.1
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 7.9e-18 96.3 399 26.6
QL04p019119 Quercus lobata HOM05D000151 ORTHO05D000074 1.0e-17 95.9 435 25.5
RcHm_v2.0_Chr6g0254611 Rosa chinensis HOM05D007346 ORTHO05D009044 1.8e-17 95.1 317 25.2
Cfa014025 Carpinus fangiana HOM05D000151 ORTHO05D000074 3.0e-17 94.4 453 24.5
RcHm_v2.0_Chr6g0254631 Rosa chinensis HOM05D007346 ORTHO05D009044 3.0e-17 94.4 316 25.0
Gorai.009G294900 Gossypium raimondii HOM05D007346 ORTHO05D009044 5.1e-17 93.6 499 23.4
Duzib116G0495 Durio zibethinus HOM05D000151 ORTHO05D000074 6.7e-17 93.2 403 25.8
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 1.1e-16 92.4 403 25.1
Ciclev10030189m.g Citrus clementina HOM05D007346 ORTHO05D009044 2.5e-16 91.3 364 24.2
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.3e-16 90.5 243 30.9
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.7e-16 90.1 231 32.0
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.7e-16 90.1 231 32.0
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 9.7e-16 89.4 401 25.2
CiPaw.08G069900 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.6e-15 88.6 394 23.6
Gohir.D05G281400 Gossypium hirsutum HOM05D007346 ORTHO05D009044 1.6e-15 88.6 288 28.1
Cfa012527 Carpinus fangiana HOM05D007346 ORTHO05D009044 2.8e-15 87.8 216 27.8
Gohir.A05G279800 Gossypium hirsutum HOM05D007346 ORTHO05D009044 3.7e-15 87.4 288 27.4
RcHm_v2.0_Chr6g0254551 Rosa chinensis HOM05D007346 ORTHO05D009044 3.7e-15 87.4 225 30.2
FvH4_2g16551 Fragaria vesca HOM05D007346 ORTHO05D009044 1.4e-14 85.5 396 24.0
PGSC0003DMG400046724 Solanum tuberosum HOM05D034039 ORTHO05D009044 1.4e-14 85.5 438 23.1
Duzib248G1625 Durio zibethinus HOM05D007346 ORTHO05D009044 2.4e-14 84.7 404 23.5
FvH4_2g03062 Fragaria vesca HOM05D007346 ORTHO05D009044 2.4e-14 84.7 223 29.1
FAN21G1548 Fragaria x ananassa HOM05D007346 ORTHO05D009044 3.1e-14 84.3 232 28.0
FAN24G3266 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.1e-14 84.0 396 23.7
FAN24G2319 Fragaria x ananassa HOM05D007346 ORTHO05D009044 6.9e-14 83.2 223 29.1
Os08g0164100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 6.9e-14 83.2 134 38.8
FvH4_4g01551 Fragaria vesca HOM05D007346 ORTHO05D009044 9.0e-14 82.8 228 29.4
FAN22G0819 Fragaria x ananassa HOM05D007346 ORTHO05D009044 9.0e-14 82.8 420 26.4
Sabra03G0128000 Salix brachista HOM05D015619 ORTHO05D009044 1.2e-13 82.4 427 23.4
PGSC0003DMG400030538 Solanum tuberosum HOM05D034039 ORTHO05D009044 1.5e-13 82.0 241 27.4
Gorai.009G294800 Gossypium raimondii HOM05D007346 ORTHO05D009044 2.6e-13 81.3 261 29.5
Lj2C486T7 Lonicera japonica HOM05D000151 ORTHO05D000074 7.7e-13 79.7 441 23.6
CAN.G1298.26 Capsicum annuum HOM05D034039 ORTHO05D009044 1.0e-12 79.3 244 27.5
Dinv39566 Davidia involucrata HOM05D000151 ORTHO05D000074 5.0e-12 77.0 395 23.8
FvH4_2g03731 Fragaria vesca HOM05D007346 ORTHO05D009044 5.0e-12 77.0 273 25.6
RcHm_v2.0_Chr6g0254681 Rosa chinensis HOM05D007346 ORTHO05D009044 5.0e-12 77.0 238 28.2
FvH4_4g04480 Fragaria vesca HOM05D000151 ORTHO05D000074 8.5e-12 76.3 296 27.7
Sabra01G0038800 Salix brachista HOM05D015619 ORTHO05D009044 1.1e-11 75.9 188 29.3
Dinv43798 Davidia involucrata HOM05D000713 ORTHO05D000547 1.9e-11 75.1 252 26.2
Dinv43794 Davidia involucrata HOM05D000151 ORTHO05D000074 3.2e-11 74.3 252 26.2
FvH4_2g04271 Fragaria vesca HOM05D007346 ORTHO05D009044 4.2e-11 73.9 277 26.4
QL05p064445 Quercus lobata HOM05D000151 ORTHO05D000074 5.5e-11 73.6 234 26.9
FvH4_4g01581 Fragaria vesca HOM05D007346 ORTHO05D009044 1.2e-10 72.4 445 23.4
Zm00001eb069880 Zea mays HOM05D000151 ORTHO05D000074 1.2e-10 72.4 419 22.2
FAN15G1511 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.6e-10 72.0 236 26.3
RcHm_v2.0_Chr3g0452431 Rosa chinensis HOM05D000151 ORTHO05D000074 2.1e-10 71.6 414 24.9
MSTRG.6367 Avicennia marina HOM05D000151 ORTHO05D000074 3.6e-10 70.9 230 27.0
FvH4_2g16550 Fragaria vesca HOM05D007346 ORTHO05D009044 3.6e-10 70.9 235 26.0
FAN15G1755 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.6e-10 70.5 235 26.8
COL.COLO4_26063 Corchorus olitorius HOM05D000151 ORTHO05D000074 6.1e-10 70.1 399 23.3
MD03G1012300 Malus domestica HOM05D007346 ORTHO05D009044 6.1e-10 70.1 177 28.2
FvH4_4g02150 Fragaria vesca HOM05D007346 ORTHO05D009044 7.9e-10 69.7 371 23.5
Zm00001eb069540 Zea mays HOM05D000151 ORTHO05D000074 7.9e-10 69.7 421 22.3
Zm00001eb069750 Zea mays HOM05D000151 ORTHO05D000074 7.9e-10 69.7 421 22.1
Zm00001eb069960 Zea mays HOM05D000151 ORTHO05D000074 7.9e-10 69.7 421 22.1
Zm00001eb250220 Zea mays HOM05D012472 ORTHO05D013904 1.0e-09 69.3 140 37.1
Zm00001eb070040 Zea mays HOM05D000151 ORTHO05D000074 1.8e-09 68.6 421 22.1
Potri.001G054200 Populus trichocarpa HOM05D015619 ORTHO05D009044 2.3e-09 68.2 188 28.7
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 2.3e-09 68.2 188 28.2
Sabra15G0099200 Salix brachista HOM05D015619 ORTHO05D009044 2.3e-09 68.2 188 28.7
Sabra15G0099600 Salix brachista HOM05D015619 ORTHO05D009044 2.3e-09 68.2 188 28.7
Sabra15G0099900 Salix brachista HOM05D015619 ORTHO05D009044 2.3e-09 68.2 188 28.7
Sabra15G0100200 Salix brachista HOM05D015619 ORTHO05D009044 2.3e-09 68.2 188 28.7
Zm00001eb069820 Zea mays HOM05D000151 ORTHO05D000074 2.3e-09 68.2 424 22.4
FAN12G0212 Fragaria x ananassa HOM05D007346 ORTHO05D009044 3.9e-09 67.4 413 24.0
FAN17G1827 Fragaria x ananassa HOM05D000151 ORTHO05D000074 3.9e-09 67.4 226 29.6
FAN24G3549 Fragaria x ananassa HOM05D007346 ORTHO05D009044 3.9e-09 67.4 216 28.2
FvH4_2g16580 Fragaria vesca HOM05D007346 ORTHO05D009044 6.7e-09 66.6 216 28.2
Os03g0708200 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.1e-08 65.9 239 28.5
FAN12G4018 Fragaria x ananassa HOM05D017087 ORTHO05D019163 1.5e-08 65.5 276 24.6
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.5e-08 65.5 255 23.9
Zm00001eb272730 Zea mays HOM05D000151 ORTHO05D000074 1.5e-08 65.5 160 33.1
RcHm_v2.0_Chr4g0388141 Rosa chinensis HOM05D007346 ORTHO05D009044 2.5e-08 64.7 155 29.0
RcHm_v2.0_Chr4g0395201 Rosa chinensis HOM05D000151 ORTHO05D000074 2.5e-08 64.7 239 27.6
PSO170G4594 Papaver somniferum HOM05D000151 ORTHO05D000074 3.3e-08 64.3 131 30.5
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.3e-08 64.3 234 24.8
COL.COLO4_05771 Corchorus olitorius HOM05D000151 ORTHO05D000074 7.4e-08 63.2 237 26.2
FAN17G3046 Fragaria x ananassa HOM05D007346 ORTHO05D009044 7.4e-08 63.2 84 35.7
TWI63G1457 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 7.4e-08 63.2 246 25.6
FAN17G0274 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.3e-07 62.4 128 28.9
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 1.7e-07 62.0 221 29.0
Prupe.1G050400 Prunus persica HOM05D000151 ORTHO05D000074 3.7e-07 60.8 254 25.2
TWI63G0828 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 4.8e-07 60.5 246 25.2
MBI19_g33448_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 1.1e-06 59.3 136 27.9
FAN18G4067 Fragaria x ananassa HOM05D003220 ORTHO05D017935 3.1e-06 57.8 126 28.6
TAR626G1713 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.3e-06 57.0 227 26.4


User provided reference genes

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