Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 0.0e+00 1102.0 575 100.0
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 3.0e-246 855.1 574 77.4
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 4.1e-227 791.6 579 73.7
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 2.9e-225 785.4 588 72.6
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.0e-217 760.4 590 69.2
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 3.5e-210 735.3 626 65.2
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 9.5e-208 727.2 580 65.7
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 8.9e-198 694.1 581 65.1
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 4.4e-197 691.8 581 65.2
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 7.6e-197 691.0 577 66.7
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 2.2e-196 689.5 573 66.1
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 2.2e-196 689.5 573 66.0
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 2.2e-196 689.5 581 64.7
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 8.4e-196 687.6 573 65.6
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 2.5e-192 676.0 576 64.6
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 1.6e-186 656.8 568 62.9
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 9.6e-184 647.5 573 62.5
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.3e-183 647.1 568 61.4
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.3e-183 647.1 572 62.1
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 2.1e-183 646.4 564 61.7
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 3.6e-183 645.6 544 66.7
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.1e-182 644.0 577 61.0
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.8e-182 643.3 565 62.1
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.8e-182 643.3 579 60.4
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 3.1e-182 642.5 562 61.4
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 4.0e-182 642.1 545 63.3
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.2e-181 640.6 576 62.0
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 2.6e-181 639.4 596 59.4
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 7.6e-181 637.9 520 65.8
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 1.7e-180 636.7 545 63.1
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 1.4e-179 633.6 568 60.4
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 3.2e-179 632.5 571 60.4
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 3.2e-179 632.5 564 59.9
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 4.2e-179 632.1 562 61.2
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 7.1e-179 631.3 562 61.2
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 7.1e-179 631.3 562 61.6
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.2e-178 630.6 572 59.8
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.6e-178 630.2 560 62.1
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 2.1e-178 629.8 570 60.9
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 3.5e-178 629.0 571 60.6
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 4.6e-178 628.6 566 61.1
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 6.0e-178 628.2 570 61.2
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.3e-177 627.1 563 60.9
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.3e-177 626.3 561 60.1
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 3.0e-177 625.9 578 59.7
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 8.7e-177 624.4 574 59.4
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.5e-176 623.6 563 60.0
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.5e-176 623.6 569 59.6
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.9e-176 623.2 566 60.2
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 4.3e-176 622.1 563 61.1
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 9.6e-176 620.9 565 60.5
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 9.6e-176 620.9 571 59.4
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 1.6e-175 620.2 565 61.8
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 2.8e-175 619.4 552 61.4
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.8e-175 619.4 571 60.8
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 3.7e-175 619.0 549 61.7
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.2e-175 618.2 575 60.2
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.1e-174 617.5 570 58.2
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 2.4e-174 616.3 567 60.1
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 2.4e-174 616.3 563 61.5
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 3.1e-174 615.9 569 61.3
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 6.9e-174 614.8 566 59.9
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 6.9e-174 614.8 563 60.7
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.5e-173 613.6 562 60.3
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.5e-173 613.6 542 63.1
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 2.6e-173 612.8 533 62.5
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 4.5e-173 612.1 563 61.1
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 4.5e-173 612.1 563 61.1
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 4.5e-173 612.1 562 59.6
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 5.8e-173 611.7 569 59.9
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 1.0e-172 610.9 562 60.5
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.9e-172 609.4 564 61.2
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 8.4e-172 607.8 564 61.2
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.1e-171 607.4 569 59.6
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 1.4e-171 607.1 546 61.0
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.9e-171 606.7 564 61.0
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 4.2e-171 605.5 566 59.7
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.1e-170 603.2 566 58.8
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 2.7e-170 602.8 563 60.4
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 7.9e-170 601.3 562 59.1
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 2.3e-169 599.7 562 58.9
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 6.7e-169 598.2 562 58.9
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 1.1e-168 597.4 567 57.1
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 3.3e-168 595.9 563 58.8
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 2.8e-167 592.8 576 57.8
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 4.8e-167 592.0 559 59.4
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 6.2e-167 591.7 563 58.8
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 3.1e-166 589.3 560 59.5
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 9.3e-163 577.8 573 56.7
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 7.9e-162 574.7 573 56.0
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 2.3e-161 573.2 521 59.1
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 1.4e-158 563.9 482 61.6
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 2.1e-154 550.1 568 56.2
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 3.9e-153 545.8 583 53.5
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 4.8e-151 538.9 472 60.6
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 5.0e-148 528.9 536 56.3
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 9.4e-147 524.6 467 62.1
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 1.0e-145 521.2 486 60.3
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.3e-136 489.6 588 48.8
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 4.1e-134 482.6 522 54.6
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 1.0e-121 441.4 327 68.8
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.5e-120 437.6 410 59.0
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 7.5e-104 382.1 522 41.4
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.7e-103 379.8 309 63.1
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 1.1e-102 378.3 275 70.9
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 9.2e-102 375.2 354 57.3
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.2e-101 374.8 304 65.5
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 4.6e-101 372.9 376 57.2
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 7.5e-96 355.5 381 52.8
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 1.4e-94 351.3 318 60.1
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 1.6e-93 347.8 355 56.6
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.3e-92 344.7 318 58.8
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 3.3e-91 340.1 394 50.5
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 8.1e-90 335.5 364 51.4
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.8e-89 334.3 364 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 1.1e-86 325.1 569 37.1
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.2e-85 321.6 568 36.3
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.1e-78 298.5 517 36.9
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 7.1e-78 295.8 228 68.4
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 1.1e-73 282.0 259 58.7
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 3.5e-61 240.4 175 72.0
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.2e-45 188.7 518 30.3
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 4.6e-45 186.8 181 54.1
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 4.8e-42 176.8 188 53.2
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 3.1e-41 174.1 282 44.7
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 3.9e-36 157.1 375 28.0
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 2.0e-35 154.8 434 27.0
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 3.6e-29 134.0 106 67.9
SGA_v2.0_scaffold38G14986 Striga asiatica HOM05D005160 ORTHO05D006127 1.8e-28 131.7 153 54.9
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 9.7e-27 125.9 115 58.3
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.9e-24 116.7 87 69.0
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 1.0e-23 115.9 608 25.8
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.5e-23 113.2 169 45.0
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 4.2e-22 110.5 367 25.3
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.8e-20 105.1 80 63.8
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 8.8e-20 102.8 350 24.3
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.7e-19 100.1 148 42.6
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 2.0e-16 91.7 173 38.7
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 4.7e-13 80.5 527 22.4
SGA_v2.0_scaffold300G47755 Striga asiatica HOM05D005160 ORTHO05D006127 6.1e-13 80.1 52 82.7
SGA_v2.0_scaffold5G02731 Striga asiatica HOM05D005160 ORTHO05D006127 1.4e-12 79.0 69 62.3
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 6.8e-12 76.6 448 21.9
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 3.5e-08 64.3 228 31.6
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 5.9e-08 63.5 461 22.6
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.9e-07 61.2 398 22.1
Cre01.g021500 Chlamydomonas reinhardtii HOM05D003356 ORTHO05D004362 1.1e-06 59.3 231 24.7


User provided reference genes

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