Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13185 Striga asiatica HOM05D001046 ORTHO05D005883 0.0e+00 1120.5 572 100.0
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 1.7e-68 264.6 346 52.3
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 9.9e-64 248.8 327 50.5
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 1.1e-62 245.4 250 58.8
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 4.2e-62 243.4 323 49.2
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 3.5e-61 240.4 359 47.4
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 1.1e-57 228.8 360 44.4
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 2.6e-56 224.2 369 43.6
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 2.2e-55 221.1 329 46.5
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 1.9e-54 218.0 333 45.6
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 9.3e-54 215.7 358 42.7
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 2.1e-53 214.5 326 45.7
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 6.0e-53 213.0 326 45.1
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 7.9e-53 212.6 349 43.0
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 1.0e-52 212.2 327 44.6
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 1.0e-52 212.2 326 44.2
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 1.3e-52 211.8 327 44.3
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 5.1e-52 209.9 384 40.4
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 4.3e-51 206.8 354 40.4
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 5.6e-51 206.5 341 41.6
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 7.3e-51 206.1 326 42.9
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 9.6e-51 205.7 325 42.8
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 1.3e-50 205.3 366 41.8
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 2.1e-50 204.5 326 42.6
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.1e-50 204.5 326 42.6
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 3.6e-50 203.8 331 42.9
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 3.6e-50 203.8 326 42.3
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 4.8e-50 203.4 332 42.8
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 8.1e-50 202.6 308 40.9
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 1.1e-49 202.2 385 39.0
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 4.0e-49 200.3 332 41.9
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 4.0e-49 200.3 326 42.0
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 1.5e-48 198.4 321 41.7
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 1.5e-48 198.4 352 40.1
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 1.5e-48 198.4 352 40.1
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 2.0e-48 198.0 334 42.2
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 2.6e-48 197.6 333 42.0
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 2.6e-48 197.6 337 40.7
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 3.4e-48 197.2 334 40.7
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 9.9e-48 195.7 339 38.6
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 1.3e-47 195.3 333 42.0
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 1.7e-47 194.9 339 38.9
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 1.7e-47 194.9 390 37.4
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 3.8e-47 193.7 325 40.9
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 3.8e-47 193.7 354 40.7
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 3.8e-47 193.7 392 38.5
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 3.8e-47 193.7 323 41.2
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 4.9e-47 193.4 328 40.5
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 4.9e-47 193.4 327 42.2
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 4.9e-47 193.4 334 40.7
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 4.9e-47 193.4 325 40.9
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 4.9e-47 193.4 319 41.4
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 6.4e-47 193.0 324 41.0
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 8.4e-47 192.6 319 42.3
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 1.1e-46 192.2 335 40.9
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 1.1e-46 192.2 335 40.9
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.1e-46 192.2 325 40.3
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 1.1e-46 192.2 325 40.3
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 1.1e-46 192.2 366 39.1
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 1.4e-46 191.8 327 41.6
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 1.9e-46 191.4 336 38.7
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 2.4e-46 191.0 321 38.3
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 3.2e-46 190.7 356 39.3
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 4.2e-46 190.3 321 38.0
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 4.2e-46 190.3 349 39.5
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 7.1e-46 189.5 333 40.8
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 1.6e-45 188.3 327 41.6
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 1.6e-45 188.3 328 41.2
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 2.1e-45 188.0 327 37.6
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 6.0e-45 186.4 383 34.2
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 1.0e-44 185.7 326 39.3
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 1.3e-44 185.3 339 38.9
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 5.1e-44 183.3 319 37.3
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 8.7e-44 182.6 319 37.3
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 8.7e-44 182.6 300 41.7
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 1.1e-43 182.2 352 36.4
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 1.5e-43 181.8 353 35.7
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 1.5e-43 181.8 345 38.0
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 4.3e-43 180.3 324 39.5
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 5.6e-43 179.9 333 38.4
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 9.6e-43 179.1 341 37.5
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 1.3e-42 178.7 333 38.4
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 2.1e-42 177.9 332 38.0
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 3.7e-42 177.2 269 44.2
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 3.1e-41 174.1 349 37.5
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 4.0e-41 173.7 268 41.0
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 5.3e-41 173.3 281 39.5
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 5.3e-41 173.3 327 37.9
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 4.5e-40 170.2 179 55.9
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 4.9e-39 166.8 326 38.0
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 1.1e-38 165.6 360 35.8
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 1.4e-38 165.2 280 38.2
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 2.7e-37 161.0 320 35.6
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 1.3e-36 158.7 322 35.4
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 1.5e-35 155.2 189 46.6
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 1.6e-34 151.8 273 40.7
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 8.4e-31 139.4 260 39.6
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 1.4e-30 138.7 132 56.1
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 4.2e-30 137.1 273 34.8
Psat6g019360 Pisum sativum HOM05D001046 ORTHO05D005883 2.0e-19 101.7 86 66.3
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 1.4e-17 95.5 184 34.2
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 6.7e-12 76.6 245 29.8
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 1.5e-11 75.5 323 24.1
Os06g0274100 Oryza sativa ssp. japonica HOM05D001046 ORTHO05D005883 2.6e-11 74.7 77 51.9
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 1.1e-09 69.3 134 29.9
SGA_v2.0_scaffold165G38249 Striga asiatica HOM05D003182 ORTHO05D003829 1.4e-09 68.9 65 58.5
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 1.6e-08 65.5 54 61.1
Oeu003450.3 Olea europaea HOM05D003182 ORTHO05D003829 3.2e-06 57.8 65 49.2
Peaxi162Scf00338g00024 Petunia axillaris HOM05D003182 ORTHO05D003829 3.2e-06 57.8 72 45.8
SalBow2G3598 Salvia bowleyana HOM05D003182 ORTHO05D003829 4.2e-06 57.4 65 47.7
unitig_8.g3167 Utricularia gibba HOM05D003182 ORTHO05D003829 4.2e-06 57.4 65 46.2
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 7.2e-06 56.6 102 35.3
Cc11_g14640 Coffea canephora HOM05D003182 ORTHO05D003829 9.4e-06 56.2 65 49.2


User provided reference genes

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