Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 0.0e+00 1144.8 620 100.0
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 8.2e-197 691.0 1064 44.7
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 4.5e-179 632.1 1020 42.6
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 5.5e-161 572.0 1022 39.1
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 1.0e-159 567.8 962 40.9
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 6.3e-157 558.5 1065 38.0
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 3.6e-152 542.7 1002 37.4
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 2.3e-151 540.0 1027 36.2
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 2.6e-150 536.6 1023 37.0
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 3.4e-150 536.2 1023 36.6
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 9.2e-148 528.1 1022 36.6
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 2.0e-147 526.9 1023 36.0
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 3.5e-147 526.2 1024 35.5
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 7.7e-147 525.0 1026 35.8
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 9.5e-145 518.1 1018 35.5
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 2.0e-142 510.4 1025 35.6
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 3.7e-141 506.1 1040 35.6
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.1e-140 502.7 1022 34.8
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 4.1e-140 502.7 1025 35.1
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 1.6e-139 500.7 1022 34.6
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 3.5e-139 499.6 1022 34.6
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 1.0e-138 498.0 1024 34.9
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.3e-138 497.7 1022 34.6
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 1.7e-138 497.3 1025 34.7
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 1.7e-138 497.3 1025 34.7
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 2.3e-138 496.9 1023 34.9
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 3.9e-138 496.1 1021 35.2
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 6.6e-138 495.4 1025 34.7
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 4.7e-136 489.2 1024 34.3
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 4.7e-136 489.2 1034 35.2
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 1.8e-135 487.3 1020 34.4
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 8.9e-135 485.0 1021 35.0
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 3.4e-134 483.0 1025 35.7
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 7.5e-134 481.9 1024 33.6
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 1.7e-133 480.7 413 64.4
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 1.7e-133 480.7 1024 33.6
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 3.7e-133 479.6 1112 32.6
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 1.4e-132 477.6 971 35.4
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 1.4e-132 477.6 1024 35.6
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 7.0e-132 475.3 1006 34.7
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 2.7e-131 473.4 982 35.9
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 3.5e-131 473.0 1025 34.0
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 2.3e-130 470.3 1029 33.4
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 3.9e-130 469.5 1028 33.8
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 2.5e-129 466.8 1021 34.4
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 7.3e-129 465.3 986 35.5
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 1.2e-128 464.5 1021 34.1
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 3.1e-127 459.9 1022 33.3
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 4.0e-127 459.5 1008 34.5
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 4.0e-127 459.5 998 34.9
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 4.0e-127 459.5 1022 33.1
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 3.4e-126 456.4 1023 32.6
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 3.4e-126 456.4 1034 33.3
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 5.8e-126 455.7 1023 33.2
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 9.8e-126 454.9 1024 32.7
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 1.1e-124 451.4 1040 33.5
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 1.1e-124 451.4 1020 32.7
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 1.9e-124 450.7 1023 33.0
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 5.4e-124 449.1 1023 32.8
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 7.1e-124 448.7 1037 32.6
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 2.7e-123 446.8 1023 32.4
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 6.0e-123 445.7 1051 32.6
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 3.0e-122 443.4 1027 32.0
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 1.9e-121 440.7 1022 32.3
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 1.9e-121 440.7 1021 32.9
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 3.3e-121 439.9 461 54.0
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 7.3e-121 438.7 997 33.2
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 8.9e-119 431.8 1032 33.4
Psat0s251g0040 Pisum sativum HOM05D001046 ORTHO05D005883 1.5e-118 431.0 410 57.1
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 2.0e-118 430.6 1022 31.9
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 4.4e-118 429.5 1028 32.1
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 6.4e-117 425.6 1023 32.2
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 7.1e-116 422.2 1022 31.9
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.6e-115 421.0 411 56.0
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 3.0e-114 416.8 988 31.9
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 4.3e-113 412.9 1063 30.7
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 8.1e-112 408.7 1053 31.5
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 3.1e-111 406.8 1018 31.3
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 6.8e-111 405.6 1021 31.0
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 2.0e-110 404.1 419 53.7
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 2.0e-110 404.1 1020 30.2
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 2.9e-109 400.2 1024 30.9
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 1.2e-107 394.8 1075 30.9
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 1.9e-105 387.5 967 31.3
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 7.3e-105 385.6 501 45.5
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 1.6e-104 384.4 818 32.8
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 1.6e-104 384.4 991 31.6
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 2.8e-104 383.6 501 45.3
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 7.6e-102 375.6 992 31.1
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 9.9e-102 375.2 1005 31.4
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 4.9e-101 372.9 415 51.1
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 2.4e-100 370.5 414 51.2
Haze_11811 Corylus avellana HOM05D001046 ORTHO05D005883 7.1e-100 369.0 370 56.8
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 4.3e-97 359.8 895 31.3
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 7.6e-94 349.0 1057 28.3
SEGI_15773 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 8.4e-93 345.5 411 48.9
Ca_30097_v3 Cicer arietinum L. HOM05D001046 ORTHO05D005883 2.8e-80 303.9 447 42.1
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 1.0e-77 295.4 1033 27.1
SGA_v2.0_scaffold32G13101 Striga asiatica HOM05D001046 ORTHO05D005883 4.1e-71 273.5 223 76.2
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 9.4e-68 262.3 201 69.2
SGA_v2.0_scaffold32G13185 Striga asiatica HOM05D001046 ORTHO05D005883 2.0e-65 254.6 327 50.5
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 3.8e-61 240.4 409 35.7
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 1.7e-56 224.9 415 37.1
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 5.3e-55 219.9 213 61.0
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 1.6e-51 208.4 227 48.0
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 1.5e-49 201.8 214 49.5
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 2.6e-49 201.1 214 49.5
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 1.4e-47 195.3 219 55.7
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 2.5e-44 184.5 211 50.7
QL03p044493 Quercus lobata HOM05D001046 ORTHO05D005883 8.8e-42 176.0 192 50.5
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 2.8e-40 171.0 268 40.7
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 1.0e-37 162.5 208 40.9
Psat6g019360 Pisum sativum HOM05D001046 ORTHO05D005883 1.1e-36 159.1 108 76.9
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.7e-32 145.2 214 41.1
MCO16G117 Micromonas commoda HOM05D001046 ORTHO05D005883 2.0e-30 138.3 320 32.2
Hma1.2p1_0189F.1_g082730 Hydrangea macrophylla HOM05D001046 ORTHO05D005883 6.8e-26 123.2 102 59.8
MBI15_g34975_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 8.9e-26 122.9 214 37.9
Cpa.g.sc1.256 Carica papaya HOM05D001046 ORTHO05D005883 2.9e-24 117.9 146 45.2
SEGI_02691 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 3.0e-21 107.8 102 49.0
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 3.6e-19 100.9 136 45.6
Psat1g160480 Pisum sativum HOM05D001046 ORTHO05D005883 8.0e-19 99.8 97 48.5
QL03p044436 Quercus lobata HOM05D001046 ORTHO05D000006 4.4e-17 94.0 92 51.1
Cre08.g377450 Chlamydomonas reinhardtii HOM05D001046 ORTHO05D005883 2.2e-16 91.7 165 35.2
Psat0s439g0040 Pisum sativum HOM05D001046 ORTHO05D005883 2.9e-16 91.3 89 48.3
Os06g0274100 Oryza sativa ssp. japonica HOM05D001046 ORTHO05D005883 3.2e-15 87.8 77 61.0
VMungo1215G0456 Vigna mungo HOM05D001046 ORTHO05D005883 7.3e-12 76.6 129 38.0
PRCOL_00002313 Prasinoderma coloniale HOM05D001046 ORTHO05D005883 2.1e-11 75.1 296 26.0
MBI15_g18372_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 8.9e-10 69.7 71 47.9
RcHm_v2.0_Chr1g0334921 Rosa chinensis HOM05D001046 ORTHO05D005883 1.3e-08 65.9 71 47.9
Sabra10G0102000 Salix brachista HOM05D001046 ORTHO05D005883 1.7e-08 65.5 73 52.1
Gohir.A13G103301 Gossypium hirsutum HOM05D001046 ORTHO05D005883 3.7e-08 64.3 62 48.4
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 1.4e-07 62.4 57 50.9
Gohir.A06G118000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.1e-07 60.8 55 52.7
Lj2g0010388 Lotus japonicus HOM05D001046 ORTHO05D005883 5.4e-07 60.5 54 61.1
PGSC0003DMG400025125 Solanum tuberosum HOM05D001046 ORTHO05D005883 7.1e-07 60.1 50 58.0
MSTRG.17352 Avicennia marina HOM05D003602 ORTHO05D004808 4.6e-06 57.4 146 26.7


User provided reference genes

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