Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 8.6e-92 340.5 197 100.0
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.2e-81 304.7 197 91.4
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 5.2e-81 304.7 197 91.4
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.9e-79 298.9 197 88.8
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 2.9e-79 298.9 197 89.8
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 4.1e-78 295.0 197 88.3
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 9.2e-78 293.9 197 89.3
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 2.1e-77 292.7 197 88.3
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 4.6e-77 291.6 200 88.5
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 6.0e-77 291.2 198 87.9
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.0e-76 290.4 197 87.8
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 1.3e-76 290.0 197 87.8
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.7e-76 289.7 198 88.4
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 3.0e-76 288.9 195 87.7
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 3.9e-76 288.5 197 87.3
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 3.9e-76 288.5 197 87.3
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 1.5e-75 286.6 197 88.3
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 1.9e-75 286.2 171 97.1
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 2.5e-75 285.8 197 86.3
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 2.5e-75 285.8 198 87.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 5.6e-75 284.6 197 86.8
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 7.3e-75 284.3 197 87.3
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.1e-74 282.7 198 86.9
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 2.1e-74 282.7 198 86.9
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.1e-74 282.7 198 86.9
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 3.6e-74 282.0 197 85.8
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 4.7e-74 281.6 197 87.3
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 1.4e-73 280.0 197 85.8
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.8e-73 279.6 197 86.8
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 2.4e-73 279.3 201 85.1
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 3.1e-73 278.9 197 85.3
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 3.1e-73 278.9 198 85.9
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 3.1e-73 278.9 198 85.9
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 6.8e-73 277.7 197 84.8
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.2e-72 276.9 197 85.3
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.5e-72 276.6 197 85.3
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.0e-72 276.2 198 85.4
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 1.3e-71 273.5 196 84.2
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 6.4e-71 271.2 197 83.8
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 1.1e-70 270.4 237 73.4
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 1.4e-70 270.0 197 83.2
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.9e-70 269.6 197 83.8
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.4e-70 269.2 197 83.2
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 2.4e-70 269.2 197 83.2
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 4.2e-70 268.5 197 83.2
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 4.2e-70 268.5 197 84.3
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 5.4e-70 268.1 197 84.3
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 5.4e-70 268.1 197 83.8
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 5.4e-70 268.1 197 83.2
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 7.1e-70 267.7 197 81.2
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 9.3e-70 267.3 197 82.7
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 9.3e-70 267.3 197 82.7
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 9.3e-70 267.3 197 83.2
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 9.3e-70 267.3 197 83.8
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 9.3e-70 267.3 196 83.7
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.6e-69 266.5 197 83.8
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 2.7e-69 265.8 197 82.2
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 2.7e-69 265.8 197 82.2
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 2.7e-69 265.8 196 82.7
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 4.6e-69 265.0 197 83.2
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 6.0e-69 264.6 196 83.2
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 6.0e-69 264.6 197 82.2
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 6.0e-69 264.6 197 82.7
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 7.8e-69 264.2 196 83.2
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 7.8e-69 264.2 197 81.7
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 7.8e-69 264.2 179 88.3
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 1.0e-68 263.8 197 82.7
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.3e-68 263.5 197 81.7
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 1.7e-68 263.1 197 81.2
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 2.3e-68 262.7 204 80.4
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.3e-68 262.7 197 81.7
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.3e-68 262.7 202 81.2
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.3e-68 262.7 197 81.7
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.3e-68 262.7 202 81.2
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 3.9e-68 261.9 160 95.6
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 5.1e-68 261.5 197 81.7
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 5.1e-68 261.5 197 80.2
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 6.6e-68 261.2 202 80.7
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 6.6e-68 261.2 197 80.7
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 6.6e-68 261.2 197 79.7
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 1.1e-67 260.4 197 82.2
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 1.5e-67 260.0 197 80.2
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.5e-67 260.0 197 81.7
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 7.3e-67 257.7 197 79.2
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 7.3e-67 257.7 196 81.6
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 9.6e-67 257.3 197 80.2
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.6e-66 256.5 199 80.4
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 3.6e-66 255.4 197 81.2
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 4.8e-66 255.0 197 78.7
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 6.2e-66 254.6 197 79.2
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 6.2e-66 254.6 197 79.2
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 6.2e-66 254.6 197 79.2
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 6.2e-66 254.6 197 80.7
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 6.2e-66 254.6 197 80.2
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 8.1e-66 254.2 197 78.7
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 1.1e-65 253.8 197 78.7
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 1.1e-65 253.8 197 78.7
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.1e-65 253.8 197 78.7
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.1e-65 253.8 197 78.7
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.1e-65 253.8 197 78.7
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 1.4e-65 253.4 197 78.7
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.8e-65 253.1 197 78.2
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 2.4e-65 252.7 197 78.2
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.4e-65 252.7 197 78.7
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 3.1e-65 252.3 197 78.2
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 3.1e-65 252.3 197 78.2
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 3.1e-65 252.3 197 80.2
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 4.0e-65 251.9 197 79.2
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 4.0e-65 251.9 197 77.7
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 4.0e-65 251.9 197 77.7
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 4.0e-65 251.9 197 78.2
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 5.3e-65 251.5 197 78.2
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 5.3e-65 251.5 199 78.9
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 6.9e-65 251.1 197 77.7
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 6.9e-65 251.1 197 77.7
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 9.0e-65 250.8 194 80.4
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.5e-64 250.0 197 77.7
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.5e-64 250.0 199 78.9
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 2.6e-64 249.2 197 77.2
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 3.4e-64 248.8 199 78.4
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 3.4e-64 248.8 200 77.5
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 5.8e-64 248.1 197 77.7
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 5.8e-64 248.1 197 79.2
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.9e-62 243.0 253 56.9
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 3.5e-61 238.8 152 94.1
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 7.8e-61 237.7 153 90.8
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 7.8e-61 237.7 153 90.8
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 7.8e-61 237.7 157 91.7
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 1.0e-60 237.3 197 76.6
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 8.7e-60 234.2 153 90.2
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 1.5e-59 233.4 179 79.3
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 2.5e-59 232.6 147 94.6
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 2.0e-56 223.0 203 73.4
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 6.4e-55 218.0 153 85.0
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 1.9e-54 216.5 136 95.6
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 9.3e-54 214.2 153 86.3
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.6e-53 213.4 159 69.8
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.3e-51 205.3 155 80.6
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.3e-51 205.3 154 81.8
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 1.6e-50 203.4 150 82.7
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 4.8e-50 201.8 197 65.0
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 1.1e-49 200.7 137 88.3
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 5.3e-49 198.4 132 90.9
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.2e-48 197.2 138 71.0
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 4.5e-48 195.3 196 66.3
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.1e-46 190.7 151 79.5
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 1.2e-45 187.2 197 58.4
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 4.6e-45 185.3 148 77.0
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 4.6e-45 185.3 128 73.4
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 7.9e-45 184.5 151 66.2
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.8e-44 183.3 146 67.8
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 3.9e-44 182.2 116 97.4
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 2.5e-43 179.5 116 91.4
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 1.4e-41 173.7 182 63.7
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 4.0e-41 172.2 111 97.3
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.0e-39 167.5 146 76.0
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 2.2e-39 166.4 134 76.9
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.6e-37 160.2 130 79.2
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 6.3e-34 148.3 123 64.2
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 8.2e-34 147.9 212 49.5
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 5.3e-33 145.2 127 61.4
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 5.9e-32 141.7 100 94.0
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.5e-14 84.0 51 78.4
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 6.7e-12 75.1 197 33.5
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 6.5e-07 58.5 61 55.7
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 6.5e-07 58.5 60 51.7
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 5.5e-06 55.5 53 45.3


User provided reference genes

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