Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13150 Striga asiatica HOM05D004136 ORTHO05D004817 7.1e-113 410.6 208 100.0
Migut.B00258 Erythranthe guttata HOM05D004136 ORTHO05D004817 2.5e-49 199.5 215 54.4
MSTRG.20103 Avicennia marina HOM05D004136 ORTHO05D004817 7.3e-49 198.0 215 54.0
SGA_v2.0_scaffold58G20560 Striga asiatica HOM05D000001 ORTHO05D009502 5.8e-46 188.3 135 68.1
CSS0034503 Camellia sinensis var. sinensis HOM05D004136 ORTHO05D004817 2.7e-43 179.5 193 53.4
Actinidia00515 Actinidia chinensis HOM05D004136 ORTHO05D004817 4.6e-43 178.7 194 52.1
Cc02_g17820 Coffea canephora HOM05D004136 ORTHO05D004817 1.3e-42 177.2 214 50.9
TAR376G0015 Trochodendron aralioides HOM05D004136 ORTHO05D004817 2.3e-42 176.4 206 49.5
Nitab4.5_0005152g0080 Nicotiana tabacum HOM05D004136 ORTHO05D004817 1.9e-41 173.3 196 51.0
Peaxi162Scf00003g01333 Petunia axillaris HOM05D004136 ORTHO05D004817 1.9e-41 173.3 196 50.0
TAR628G0800 Trochodendron aralioides HOM05D004136 ORTHO05D004817 7.3e-41 171.4 207 47.8
vmacro19436 Vaccinium macrocarpon HOM05D004136 ORTHO05D004817 1.2e-40 170.6 245 43.7
SalBow6G6921 Salvia bowleyana HOM05D004136 ORTHO05D004817 1.6e-40 170.2 129 62.0
QL06p045366 Quercus lobata HOM05D004136 ORTHO05D004817 2.1e-40 169.9 207 48.3
SalBow6G5424 Salvia bowleyana HOM05D004136 ORTHO05D004817 2.8e-40 169.5 134 60.4
Rhsim11G0174000 Rhododendron simsii HOM05D004136 ORTHO05D004817 3.6e-40 169.1 230 45.7
Nitab4.5_0001361g0200 Nicotiana tabacum HOM05D004136 ORTHO05D004817 1.1e-39 167.5 197 50.3
vmacro02133 Vaccinium macrocarpon HOM05D004136 ORTHO05D004817 2.3e-39 166.4 215 47.9
CAN.G352.59 Capsicum annuum HOM05D004136 ORTHO05D004817 3.1e-39 166.0 205 48.8
Nn5g29529 Nelumbo nucifera HOM05D004136 ORTHO05D004817 4.0e-39 165.6 210 45.2
Peaxi162Scf00089g00243 Petunia axillaris HOM05D004136 ORTHO05D004817 5.2e-39 165.2 213 46.5
Cfa004279 Carpinus fangiana HOM05D004136 ORTHO05D004817 6.8e-39 164.9 208 47.1
PGSC0003DMG400033909 Solanum tuberosum HOM05D004136 ORTHO05D004817 8.9e-39 164.5 196 48.5
Solyc03g110920.2 Solanum lycopersicum HOM05D004136 ORTHO05D004817 1.2e-38 164.1 205 47.8
GSVIVG01031926001 Vitis vinifera HOM05D004136 ORTHO05D004817 2.0e-38 163.3 203 48.8
RcHm_v2.0_Chr6g0263171 Rosa chinensis HOM05D004136 ORTHO05D004817 2.6e-38 162.9 199 46.7
Potri.009G113400 Populus trichocarpa HOM05D004136 ORTHO05D004817 3.4e-38 162.5 199 47.2
Sc18g0004640 Simmondsia chinensis HOM05D004136 ORTHO05D004817 3.4e-38 162.5 208 46.6
Solyc10g051300.2 Solanum lycopersicum HOM05D004136 ORTHO05D004817 4.4e-38 162.2 196 48.5
Sopen10g022980 Solanum pennellii HOM05D004136 ORTHO05D004817 4.4e-38 162.2 196 48.5
EL10Ac9g21751 Beta vulgaris HOM05D004136 ORTHO05D004817 5.8e-38 161.8 212 42.9
MD10G1080600 Malus domestica HOM05D004136 ORTHO05D004817 7.5e-38 161.4 199 48.2
AUR62011354 Chenopodium quinoa HOM05D004136 ORTHO05D004817 1.7e-37 160.2 216 46.3
Nitab4.5_0001311g0020 Nicotiana tabacum HOM05D004136 ORTHO05D004817 2.9e-37 159.5 212 47.6
Manes.15G167200 Manihot esculenta HOM05D004136 ORTHO05D004817 4.9e-37 158.7 194 46.4
Aqoxy6G01036 Aquilegia oxysepala HOM05D004136 ORTHO05D004817 6.4e-37 158.3 207 47.3
CSS0025580 Camellia sinensis var. sinensis HOM05D004136 ORTHO05D004817 8.3e-37 157.9 210 45.7
Nitab4.5_0011188g0010 Nicotiana tabacum HOM05D004136 ORTHO05D004817 1.1e-36 157.5 212 47.6
CiPaw.01G034600 Carya illinoinensis HOM05D004136 ORTHO05D004817 1.9e-36 156.8 205 44.9
Thecc.02G122900 Theobroma cacao HOM05D004136 ORTHO05D004817 1.9e-36 156.8 200 45.5
Atru.chr5.2955 Acer truncatum HOM05D004136 ORTHO05D004817 2.4e-36 156.4 203 43.8
Nn1g05079 Nelumbo nucifera HOM05D004136 ORTHO05D004817 2.4e-36 156.4 214 43.0
Potri.007G029300 Populus trichocarpa HOM05D004136 ORTHO05D004817 4.1e-36 155.6 206 46.1
Duzib248G0461 Durio zibethinus HOM05D004136 ORTHO05D004817 7.1e-36 154.8 199 45.7
TWI75G0712 Tripterygium wilfordii HOM05D004136 ORTHO05D004817 7.1e-36 154.8 224 44.2
Ah.01g019590 Amaranthus hybridus HOM05D004136 ORTHO05D004817 1.6e-35 153.7 219 42.9
FvH4_2g08300 Fragaria vesca HOM05D004136 ORTHO05D004817 2.1e-35 153.3 198 44.9
RcHm_v2.0_Chr2g0102181 Rosa chinensis HOM05D004136 ORTHO05D004817 2.1e-35 153.3 215 42.3
Ciclev10029342m.g Citrus clementina HOM05D004136 ORTHO05D004817 2.7e-35 152.9 214 43.5
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 2.7e-35 152.9 205 43.9
FAN15G1236 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.0e-34 151.0 199 46.2
Prupe.8G101900 Prunus persica HOM05D004136 ORTHO05D004817 1.0e-34 151.0 134 56.0
PSO675G6408 Papaver somniferum HOM05D004136 ORTHO05D004817 1.3e-34 150.6 181 45.3
arahy.Tifrunner.gnm1.ann1.QP0UED Arachis hypogaea HOM05D004136 ORTHO05D004817 1.7e-34 150.2 135 57.8
HanXRQChr08g0216581 Helianthus annuus HOM05D004136 ORTHO05D004817 1.7e-34 150.2 205 42.9
Prupe.7G150800 Prunus persica HOM05D004136 ORTHO05D004817 1.7e-34 150.2 209 41.1
Sopen03g030110 Solanum pennellii HOM05D004136 ORTHO05D004817 1.7e-34 150.2 194 46.9
HanXRQChr04g0127871 Helianthus annuus HOM05D004136 ORTHO05D004817 3.0e-34 149.4 180 46.1
Glyma.11G065100 Glycine max HOM05D004136 ORTHO05D004817 6.6e-34 148.3 215 41.4
Atru.chr3.535 Acer truncatum HOM05D004136 ORTHO05D004817 1.1e-33 147.5 208 43.3
Eucgr.I01252 Eucalyptus grandis HOM05D004136 ORTHO05D004817 1.1e-33 147.5 203 42.9
Hund00289 Selenicereus undatus HOM05D004136 ORTHO05D004817 1.1e-33 147.5 198 45.5
DCAR_022101 Daucus carota HOM05D004136 ORTHO05D004817 1.5e-33 147.1 207 44.0
Glyma.01G177300 Glycine max HOM05D004136 ORTHO05D004817 1.9e-33 146.7 209 39.7
PGR119G1684 Punica granatum HOM05D004136 ORTHO05D004817 1.9e-33 146.7 206 44.2
Gohir.A04G117200 Gossypium hirsutum HOM05D004136 ORTHO05D004817 2.5e-33 146.4 201 44.8
Lsat_1_v5_gn_9_109341 Lactuca sativa HOM05D004136 ORTHO05D004817 2.5e-33 146.4 205 41.5
Sp7g34380 Schrenkiella parvula HOM05D004136 ORTHO05D004817 2.5e-33 146.4 210 44.8
CANSAT01G2667 Cannabis sativa HOM05D004136 ORTHO05D004817 5.6e-33 145.2 208 43.3
VMungo1215G0182 Vigna mungo HOM05D004136 ORTHO05D004817 5.6e-33 145.2 208 41.8
BcaB03g12374 Brassica carinata HOM05D004136 ORTHO05D004817 7.3e-33 144.8 211 44.5
Cpa.g.sc62.117 Carica papaya HOM05D004136 ORTHO05D004817 7.3e-33 144.8 200 43.0
Lj2g0019230 Lotus japonicus HOM05D004136 ORTHO05D004817 7.3e-33 144.8 212 42.5
ECA236G4692 Erigeron canadensis HOM05D000001 ORTHO05D009502 9.5e-33 144.4 212 42.0
FAN23G0822 Fragaria x ananassa HOM05D004136 ORTHO05D004817 9.5e-33 144.4 216 41.7
AT4G36720 Arabidopsis thaliana HOM05D004136 ORTHO05D004817 1.2e-32 144.1 209 42.1
Thhalv10026250m.g Eutrema salsugineum HOM05D004136 ORTHO05D004817 1.2e-32 144.1 218 41.7
FAN26G1434 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.2e-32 144.1 216 41.2
A08p22370 Brassica napus HOM05D004136 ORTHO05D004817 1.6e-32 143.7 211 44.1
BraA08t34194Z Brassica rapa HOM05D004136 ORTHO05D004817 1.6e-32 143.7 211 44.1
FAN20G0668 Fragaria x ananassa HOM05D004136 ORTHO05D004817 1.6e-32 143.7 199 44.7
Gohir.A03G179700 Gossypium hirsutum HOM05D004136 ORTHO05D004817 1.6e-32 143.7 202 42.1
Cpa.g.sc158.6 Carica papaya HOM05D004136 ORTHO05D004817 2.1e-32 143.3 206 41.3
Gorai.012G146300 Gossypium raimondii HOM05D004136 ORTHO05D004817 2.1e-32 143.3 201 44.3
Phvul.002G027400 Phaseolus vulgaris HOM05D004136 ORTHO05D004817 2.1e-32 143.3 210 41.0
Lalb_Chr05g0212951 Lupinus albus HOM05D004136 ORTHO05D004817 2.8e-32 142.9 209 39.2
Gohir.D02G202933 Gossypium hirsutum HOM05D004136 ORTHO05D004817 3.6e-32 142.5 202 41.1
Gorai.005G228600 Gossypium raimondii HOM05D004136 ORTHO05D004817 3.6e-32 142.5 202 41.1
QL11p042830 Quercus lobata HOM05D004136 ORTHO05D004817 3.6e-32 142.5 190 42.1
Carub.0007s0360 Capsella rubella HOM05D004136 ORTHO05D004817 8.1e-32 141.4 210 43.8
MBI16_g35701_MAGBIO Magnolia biondii HOM05D004136 ORTHO05D004817 8.1e-32 141.4 216 41.7
BcaNung04434 Brassica carinata HOM05D004136 ORTHO05D004817 2.4e-31 139.8 212 42.9
BcaC01g00446 Brassica carinata HOM05D004136 ORTHO05D004817 4.0e-31 139.0 218 41.3
BolC3t20246H Brassica oleracea HOM05D004136 ORTHO05D004817 4.0e-31 139.0 218 41.3
Dinv23548 Davidia involucrata HOM05D004136 ORTHO05D004817 5.2e-31 138.7 146 52.7
Lsat_1_v5_gn_7_89700 Lactuca sativa HOM05D004136 ORTHO05D004817 5.2e-31 138.7 195 44.1
CDE04G1766 Ceratophyllum demersum HOM05D004136 ORTHO05D004817 6.8e-31 138.3 198 41.4
Lsat_1_v5_gn_9_109361 Lactuca sativa HOM05D004136 ORTHO05D004817 8.9e-31 137.9 207 41.1
Phvul.011G046900 Phaseolus vulgaris HOM05D004136 ORTHO05D004817 8.9e-31 137.9 130 49.2
Sabra07G0025200 Salix brachista HOM05D004136 ORTHO05D004817 8.9e-31 137.9 192 42.2
Aa31LG6G13530 Aethionema arabicum HOM05D004136 ORTHO05D004817 1.2e-30 137.5 211 43.1
BolC7t46611H Brassica oleracea HOM05D004136 ORTHO05D004817 1.2e-30 137.5 207 42.0
Gohir.D04G158900 Gossypium hirsutum HOM05D004136 ORTHO05D004817 1.2e-30 137.5 196 44.4
Hma1.2p1_0652F.1_g195840 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 1.5e-30 137.1 215 40.5
A01p02190 Brassica napus HOM05D004136 ORTHO05D004817 2.0e-30 136.7 212 41.5
C03p79930 Brassica napus HOM05D004136 ORTHO05D004817 2.0e-30 136.7 218 40.8
Lj5A200T57 Lonicera japonica HOM05D004136 ORTHO05D004817 2.0e-30 136.7 166 47.0
Glyma.12G044900 Glycine max HOM05D004136 ORTHO05D004817 3.4e-30 136.0 200 42.0
Thecc.01G039800 Theobroma cacao HOM05D004136 ORTHO05D004817 3.4e-30 136.0 210 40.0
BraA01t00208Z Brassica rapa HOM05D001320 ORTHO05D006314 4.4e-30 135.6 212 41.5
CARHR245070 Cardamine hirsuta HOM05D004136 ORTHO05D004817 5.8e-30 135.2 207 39.6
FAN28G1223 Fragaria x ananassa HOM05D004136 ORTHO05D004817 5.8e-30 135.2 228 39.0
THA.LOC104807547 Tarenaya hassleriana HOM05D004136 ORTHO05D004817 7.6e-30 134.8 207 39.6
AL7G14290 Arabidopsis lyrata HOM05D004136 ORTHO05D004817 1.3e-29 134.0 134 51.5
Glyma.11G119700 Glycine max HOM05D004136 ORTHO05D004817 1.7e-29 133.7 195 40.0
Hma1.2p1_3707F.1_g337330 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 3.8e-29 132.5 216 41.2
TWI75G1726 Tripterygium wilfordii HOM05D004136 ORTHO05D004817 3.8e-29 132.5 182 44.0
Sed0013019 Sechium edule HOM05D004136 ORTHO05D004817 4.9e-29 132.1 215 38.6
BcaNung00706 Brassica carinata HOM05D004136 ORTHO05D004817 6.4e-29 131.7 207 40.1
C01p02380 Brassica napus HOM05D004136 ORTHO05D004817 6.4e-29 131.7 207 40.1
Gohir.D10G093300 Gossypium hirsutum HOM05D004136 ORTHO05D004817 6.4e-29 131.7 178 42.1
ClCG01G019370 Citrullus lanatus HOM05D004136 ORTHO05D004817 8.4e-29 131.3 215 39.5
Duzib187G0328 Durio zibethinus HOM05D004136 ORTHO05D004817 8.4e-29 131.3 204 40.2
VMungo1127G1479 Vigna mungo HOM05D004136 ORTHO05D004817 8.4e-29 131.3 130 47.7
Sed0010733 Sechium edule HOM05D004136 ORTHO05D004817 1.1e-28 131.0 177 41.2
Psat2g161160 Pisum sativum HOM05D004136 ORTHO05D004817 1.4e-28 130.6 208 38.5
Gohir.A10G094600 Gossypium hirsutum HOM05D004136 ORTHO05D004817 1.9e-28 130.2 177 41.8
Gorai.011G102500 Gossypium raimondii HOM05D004136 ORTHO05D004817 1.9e-28 130.2 177 41.8
ATR0733G067 Amborella trichopoda HOM05D004136 ORTHO05D004817 2.4e-28 129.8 187 40.6
TPR.G18804 Trifolium pratense HOM05D004136 ORTHO05D004817 2.4e-28 129.8 204 39.7
FAN19G3158 Fragaria x ananassa HOM05D004136 ORTHO05D004817 5.4e-28 128.6 162 45.1
COL.COLO4_22117 Corchorus olitorius HOM05D004136 ORTHO05D004817 7.1e-28 128.3 220 38.2
HPP92_007890 Vanilla planifolia HOM05D004136 ORTHO05D004817 2.7e-27 126.3 207 37.2
Zm00001eb148430 Zea mays HOM05D004136 ORTHO05D004817 2.7e-27 126.3 213 38.0
GSVIVG01019007001 Vitis vinifera HOM05D004136 ORTHO05D004817 6.0e-27 125.2 145 49.0
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 1.7e-26 123.6 225 35.6
Oeu014332.1 Olea europaea HOM05D004136 ORTHO05D004817 1.7e-26 123.6 108 56.5
HPP92_007875 Vanilla planifolia HOM05D004136 ORTHO05D004817 1.7e-26 123.6 207 36.2
arahy.Tifrunner.gnm1.ann1.KSUC5C Arachis hypogaea HOM05D001320 ORTHO05D006314 2.3e-26 123.2 238 35.7
PSO541G5216 Papaver somniferum HOM05D004136 ORTHO05D004817 2.3e-26 123.2 148 46.6
Mapoly0166s0019 Marchantia polymorpha HOM05D004136 ORTHO05D004817 6.6e-26 121.7 211 37.4
C07p61890 Brassica napus HOM05D004136 ORTHO05D004817 8.7e-26 121.3 200 40.0
CsaV3_6G046090 Cucumis sativus L. HOM05D004136 ORTHO05D004817 1.1e-25 120.9 169 42.0
Manes.13G137000 Manihot esculenta HOM05D004136 ORTHO05D004817 2.5e-25 119.8 179 41.9
Medtr5g019720 Medicago truncatula HOM05D004136 ORTHO05D004817 3.3e-25 119.4 208 36.1
Os07g0568400 Oryza sativa ssp. japonica HOM05D004136 ORTHO05D004817 4.3e-25 119.0 213 38.0
MELO3C007812.2 Cucumis melo HOM05D004136 ORTHO05D004817 5.6e-25 118.6 175 40.6
FvH4_1g13870 Fragaria vesca HOM05D004136 ORTHO05D004817 7.3e-25 118.2 157 43.9
AUR62016708 Chenopodium quinoa HOM05D004136 ORTHO05D004817 2.1e-24 116.7 226 39.4
Actinidia22486 Actinidia chinensis HOM05D004136 ORTHO05D004817 8.1e-24 114.8 121 49.6
Pp3c2_21660 Physcomitrium patens HOM05D004136 ORTHO05D004817 8.1e-24 114.8 166 42.8
FAN24G1607 Fragaria x ananassa HOM05D004136 ORTHO05D004817 2.4e-23 113.2 113 47.8
PGSC0003DMG402015201 Solanum tuberosum HOM05D004136 ORTHO05D004817 5.3e-23 112.1 75 64.0
DCAR_017235 Daucus carota HOM05D004136 ORTHO05D004817 6.9e-23 111.7 209 35.4
arahy.Tifrunner.gnm1.ann1.65EKU6 Arachis hypogaea HOM05D004136 ORTHO05D004817 9.0e-23 111.3 191 37.7
Sabra09G0086700 Salix brachista HOM05D004136 ORTHO05D004817 9.9e-22 107.8 295 30.5
AagrBONN_evm.TU.Sc2ySwM_344.5399 Anthoceros agrestis HOM05D004136 ORTHO05D004817 1.6e-19 100.5 222 32.9
Ciclev10033473m.g Citrus clementina HOM05D004136 ORTHO05D004817 7.8e-19 98.2 64 68.8
Haze_15121 Corylus avellana HOM05D004136 ORTHO05D004817 1.7e-18 97.1 208 35.1
SMO215G0008 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 1.9e-17 93.6 171 32.7
SMO140G0008 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 7.3e-17 91.7 164 33.5
SEGI_19820 Sequoiadendron giganteum HOM05D004136 ORTHO05D004817 1.3e-16 90.9 173 31.8
SEGI_34010 Sequoiadendron giganteum HOM05D004136 ORTHO05D004817 2.1e-16 90.1 65 58.5
SMO114G0054 Selaginella moellendorffii HOM05D004136 ORTHO05D004817 3.8e-13 79.3 64 46.9
CAN.G1.45 Capsicum annuum HOM05D004136 ORTHO05D004817 1.4e-12 77.4 102 50.0
MD15G1266600 Malus domestica HOM05D004136 ORTHO05D004817 3.5e-11 72.8 99 40.4
arahy.Tifrunner.gnm1.ann1.4DKU0T Arachis hypogaea HOM05D004136 ORTHO05D004817 6.0e-11 72.0 49 67.3
Hma1.2p1_0066F.1_g036680 Hydrangea macrophylla HOM05D004136 ORTHO05D004817 1.1e-09 67.8 117 41.0
A03p64470 Brassica napus HOM05D004136 ORTHO05D004817 1.8e-07 60.5 101 35.6
PRCOL_00002133 Prasinoderma coloniale HOM05D001280 ORTHO05D004817 4.0e-07 59.3 64 37.5
Cre17.g696850 Chlamydomonas reinhardtii HOM05D000650 ORTHO05D004817 3.4e-06 56.2 102 31.4
Gohir.D12G179240 Gossypium hirsutum HOM05D000650 ORTHO05D000735 9.9e-06 54.7 117 27.4


User provided reference genes

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