Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13147 Striga asiatica HOM05D001046 ORTHO05D005883 0.0e+00 1294.6 664 100.0
SGA_v2.0_scaffold21G09423 Striga asiatica HOM05D001046 ORTHO05D005883 2.6e-265 918.7 685 76.1
SGA_v2.0_scaffold16G07861 Striga asiatica HOM05D001046 ORTHO05D005883 5.4e-215 751.5 632 67.4
Migut.L01124 Erythranthe guttata HOM05D001046 ORTHO05D005883 8.2e-195 684.5 586 62.8
MSTRG.7703 Avicennia marina HOM05D001046 ORTHO05D005883 4.3e-188 662.1 557 64.6
SalBow8G4857 Salvia bowleyana HOM05D001046 ORTHO05D005883 2.3e-181 639.8 626 57.2
Oeu002624.1 Olea europaea HOM05D001046 ORTHO05D005883 4.8e-179 632.1 584 58.9
DCAR_023709 Daucus carota HOM05D001046 ORTHO05D005883 3.3e-172 609.4 580 56.6
Solyc05g010160.3 Solanum lycopersicum HOM05D001046 ORTHO05D005883 2.2e-171 606.7 584 55.0
Sopen05g005940 Solanum pennellii HOM05D001046 ORTHO05D005883 4.1e-170 602.4 583 55.4
Peaxi162Scf00188g00433 Petunia axillaris HOM05D001046 ORTHO05D005883 5.3e-170 602.1 584 55.1
Lj3C1023G11 Lonicera japonica HOM05D001046 ORTHO05D005883 3.5e-169 599.4 549 59.4
vmacro18368 Vaccinium macrocarpon HOM05D001046 ORTHO05D005883 7.2e-167 591.7 583 56.4
CAN.G184.47 Capsicum annuum HOM05D001046 ORTHO05D005883 2.1e-166 590.1 586 54.8
Actinidia30169 Actinidia chinensis HOM05D001046 ORTHO05D005883 2.7e-166 589.7 588 55.8
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 4.4e-164 582.4 581 55.2
Atru.chr11.1438 Acer truncatum HOM05D001046 ORTHO05D005883 8.5e-160 568.2 593 51.4
Atru.chr11.1468 Acer truncatum HOM05D001046 ORTHO05D005883 8.5e-160 568.2 593 51.4
CSS0000214 Camellia sinensis var. sinensis HOM05D001046 ORTHO05D005883 1.1e-159 567.8 587 53.5
Prupe.1G300500 Prunus persica HOM05D001046 ORTHO05D005883 2.5e-159 566.6 588 52.0
TAR629G1491 Trochodendron aralioides HOM05D001046 ORTHO05D005883 9.4e-159 564.7 591 52.6
Ciclev10030592m.g Citrus clementina HOM05D001046 ORTHO05D005883 1.6e-158 563.9 589 53.3
FvH4_4g28521 Fragaria vesca HOM05D001046 ORTHO05D005883 2.1e-158 563.5 590 51.7
HanXRQChr15g0475941 Helianthus annuus HOM05D001046 ORTHO05D005883 3.6e-158 562.8 594 51.5
RcHm_v2.0_Chr4g0436541 Rosa chinensis HOM05D001046 ORTHO05D005883 3.6e-158 562.8 586 51.5
FAN07G2005 Fragaria x ananassa HOM05D001046 ORTHO05D005883 4.7e-158 562.4 597 50.8
Gohir.A12G157800 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.7e-158 562.4 590 51.5
Cfa008799 Carpinus fangiana HOM05D001046 ORTHO05D005883 1.8e-157 560.5 589 52.3
MD16G1051700 Malus domestica HOM05D001046 ORTHO05D005883 8.8e-157 558.1 584 52.1
CiPaw.05G117600 Carya illinoinensis HOM05D001046 ORTHO05D005883 2.6e-156 556.6 580 52.1
Eucgr.B03078 Eucalyptus grandis HOM05D001046 ORTHO05D005883 3.4e-156 556.2 594 53.2
Nn3g17629 Nelumbo nucifera HOM05D001046 ORTHO05D005883 5.7e-156 555.4 586 52.0
ECA246G0060 Erigeron canadensis HOM05D001046 ORTHO05D005883 7.5e-156 555.1 588 52.0
Manes.06G076400 Manihot esculenta HOM05D001046 ORTHO05D005883 1.3e-155 554.3 595 50.6
Cc11_g11040 Coffea canephora HOM05D001046 ORTHO05D005883 1.7e-155 553.9 600 51.8
Nitab4.5_0006347g0030 Nicotiana tabacum HOM05D001046 ORTHO05D005883 1.7e-155 553.9 580 53.3
Gohir.D12G160700 Gossypium hirsutum HOM05D001046 ORTHO05D005883 2.2e-155 553.5 590 50.8
Gorai.008G173700 Gossypium raimondii HOM05D001046 ORTHO05D005883 2.2e-155 553.5 590 50.8
FAN17G2519 Fragaria x ananassa HOM05D001046 ORTHO05D005883 4.9e-155 552.4 611 49.8
COL.COLO4_27721 Corchorus olitorius HOM05D001046 ORTHO05D005883 1.8e-154 550.4 603 51.2
FAN12G0380 Fragaria x ananassa HOM05D001046 ORTHO05D005883 1.8e-154 550.4 585 50.8
CsaV3_5G033760 Cucumis sativus L. HOM05D001046 ORTHO05D005883 4.1e-154 549.3 591 52.1
MELO3C012192.2 Cucumis melo HOM05D001046 ORTHO05D005883 2.0e-153 547.0 591 51.9
PGR102G1932 Punica granatum HOM05D001046 ORTHO05D005883 2.7e-153 546.6 587 52.6
Thecc.02G315500 Theobroma cacao HOM05D001046 ORTHO05D005883 5.9e-153 545.4 586 50.7
Duzib248G1558 Durio zibethinus HOM05D001046 ORTHO05D005883 1.3e-152 544.3 589 50.6
Sc14g0007590 Simmondsia chinensis HOM05D001046 ORTHO05D005883 2.3e-152 543.5 612 49.7
Potri.008G109300 Populus trichocarpa HOM05D001046 ORTHO05D005883 5.0e-152 542.3 588 50.2
Potri.T108626 Populus trichocarpa HOM05D001046 ORTHO05D005883 8.6e-152 541.6 588 50.2
AUR62002966 Chenopodium quinoa HOM05D001046 ORTHO05D005883 2.5e-151 540.0 598 49.8
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 3.3e-151 539.7 587 50.1
Nitab4.5_0000259g0330 Nicotiana tabacum HOM05D001046 ORTHO05D005883 4.3e-151 539.3 527 55.2
Hund25120 Selenicereus undatus HOM05D001046 ORTHO05D005883 5.6e-151 538.9 599 49.7
THA.LOC104808446 Tarenaya hassleriana HOM05D001046 ORTHO05D005883 1.0e-149 534.6 589 49.6
FAN22G0985 Fragaria x ananassa HOM05D001046 ORTHO05D005883 4.0e-149 532.7 632 47.8
BcaB03g14057 Brassica carinata HOM05D001046 ORTHO05D005883 1.2e-148 531.2 581 48.9
CANSAT64G1908 Cannabis sativa HOM05D001046 ORTHO05D005883 2.0e-148 530.4 587 50.9
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 3.4e-148 529.6 586 48.3
Rhsim08G0040600 Rhododendron simsii HOM05D001046 ORTHO05D005883 3.4e-148 529.6 681 46.5
Aa31LG7G8840 Aethionema arabicum HOM05D001046 ORTHO05D005883 1.7e-147 527.3 596 49.0
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 1.7e-147 527.3 594 48.1
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 1.7e-147 527.3 586 49.5
Carub.0001s2479 Capsella rubella HOM05D001046 ORTHO05D005883 2.9e-147 526.6 578 49.3
Aqoxy3G00421 Aquilegia oxysepala HOM05D001046 ORTHO05D005883 8.3e-147 525.0 587 49.1
Medtr0010s0220 Medicago truncatula HOM05D001046 ORTHO05D005883 1.4e-146 524.2 583 50.4
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 1.8e-146 523.9 588 48.6
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 3.2e-146 523.1 584 49.0
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 5.4e-146 522.3 585 50.3
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 1.6e-145 520.8 587 50.3
Psat0s251g0080 Pisum sativum HOM05D001046 ORTHO05D005883 2.7e-145 520.0 589 49.1
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 1.3e-144 517.7 587 47.7
Sed0023728 Sechium edule HOM05D001046 ORTHO05D005883 3.0e-144 516.5 587 48.7
TWI79G0779 Tripterygium wilfordii HOM05D001046 ORTHO05D005883 3.0e-144 516.5 589 49.1
Dinv27415 Davidia involucrata HOM05D001046 ORTHO05D005883 3.9e-144 516.2 467 58.9
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 5.0e-144 515.8 592 48.3
AUR62007774 Chenopodium quinoa HOM05D001046 ORTHO05D005883 8.6e-144 515.0 588 48.5
Glyma.02G128900 Glycine max HOM05D001046 ORTHO05D005883 8.6e-144 515.0 587 49.1
Lsat_1_v5_gn_3_62681 Lactuca sativa HOM05D001046 ORTHO05D005883 1.1e-143 514.6 582 49.7
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 2.1e-142 510.4 595 48.1
VMungo1215G2127 Vigna mungo HOM05D001046 ORTHO05D005883 1.0e-141 508.1 579 49.1
Glyma.01G093902 Glycine max HOM05D001046 ORTHO05D005883 5.2e-141 505.8 586 48.5
EL10Ac6g14562 Beta vulgaris HOM05D001046 ORTHO05D005883 2.0e-140 503.8 597 46.6
Sabra08G0083000 Salix brachista HOM05D001046 ORTHO05D005883 2.7e-137 493.4 664 44.1
ClCG05G023270 Citrullus lanatus HOM05D001046 ORTHO05D005883 3.5e-137 493.0 610 47.5
ATR0691G253 Amborella trichopoda HOM05D001046 ORTHO05D005883 1.1e-135 488.0 588 46.4
Phvul.003G034100 Phaseolus vulgaris HOM05D001046 ORTHO05D005883 2.4e-130 470.3 580 47.4
Lalb_Chr04g0255081 Lupinus albus HOM05D001046 ORTHO05D005883 9.2e-130 468.4 491 52.1
Zm00001eb380420 Zea mays HOM05D001046 ORTHO05D005883 7.3e-127 458.8 591 45.2
Ah.03g138130 Amaranthus hybridus HOM05D001046 ORTHO05D005883 8.9e-125 451.8 602 44.5
unitig_699.g19897 Utricularia gibba HOM05D001046 ORTHO05D005883 3.4e-124 449.9 588 46.3
Thhalv10006742m.g Eutrema salsugineum HOM05D001046 ORTHO05D005883 4.4e-124 449.5 465 50.8
HPP92_018028 Vanilla planifolia HOM05D001046 ORTHO05D005883 1.7e-120 437.6 588 41.0
Pp3c3_32130 Physcomitrium patens HOM05D001046 ORTHO05D005883 3.1e-117 426.8 582 42.3
Mapoly0176s0015 Marchantia polymorpha HOM05D001046 ORTHO05D005883 2.4e-114 417.2 523 44.2
QL03p044469 Quercus lobata HOM05D001046 ORTHO05D005883 3.0e-112 410.2 423 53.2
CDE04G1715 Ceratophyllum demersum HOM05D001046 ORTHO05D005883 1.4e-101 374.8 511 42.7
arahy.Tifrunner.gnm1.ann1.4S8EHX Arachis hypogaea HOM05D001046 ORTHO05D005883 7.1e-98 362.5 397 47.4
arahy.Tifrunner.gnm1.ann1.A78PMJ Arachis hypogaea HOM05D001046 ORTHO05D005883 9.3e-98 362.1 397 47.4
MBI15_g18373_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.6e-89 334.7 353 51.6
CBR_g22326 Chara braunii HOM05D001046 ORTHO05D005883 2.6e-84 317.4 533 36.2
CBR_g23906 Chara braunii HOM05D001046 ORTHO05D005883 5.7e-79 299.7 532 33.5
SEGI_02691 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 9.7e-71 272.3 283 49.1
SMO144G0070 Selaginella moellendorffii HOM05D001046 ORTHO05D005883 3.1e-61 240.7 609 28.7
MBI15_g34975_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 1.3e-54 218.8 324 41.7
MCO16G117 Micromonas commoda HOM05D001046 ORTHO05D005883 6.5e-51 206.5 560 27.3
Hma1.2p1_0189F.1_g082730 Hydrangea macrophylla HOM05D001046 ORTHO05D005883 4.2e-50 203.8 211 55.0
SGA_v2.0_scaffold32G13175 Striga asiatica HOM05D001046 ORTHO05D005883 2.0e-47 194.9 219 55.7
MBI15_g45230_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 8.0e-41 172.9 279 39.8
arahy.Tifrunner.gnm1.ann1.L5PVB5 Arachis hypogaea HOM05D001046 ORTHO05D005883 1.0e-35 156.0 189 45.0
arahy.Tifrunner.gnm1.ann1.X1G7WL Arachis hypogaea HOM05D001046 ORTHO05D005883 1.0e-35 156.0 189 45.0
Cre08.g377450 Chlamydomonas reinhardtii HOM05D001046 ORTHO05D005883 2.9e-35 154.5 602 23.4
SEGI_13623 Sequoiadendron giganteum HOM05D001046 ORTHO05D005883 1.5e-23 115.5 152 43.4
Lju470A13T26 Lonicera japonica HOM05D001046 ORTHO05D005883 7.5e-23 113.2 116 53.4
Cpa.g.sc1.256 Carica papaya HOM05D001046 ORTHO05D005883 6.4e-22 110.2 149 41.6
QL03p044436 Quercus lobata HOM05D001046 ORTHO05D000006 1.9e-18 98.6 97 50.5
PRCOL_00002313 Prasinoderma coloniale HOM05D001046 ORTHO05D005883 3.4e-15 87.8 582 22.2
Psat5g215000 Pisum sativum HOM05D001046 ORTHO05D015028 5.4e-13 80.5 68 57.4
Psat0s3411g0120 Pisum sativum HOM05D001046 ORTHO05D015028 7.1e-13 80.1 110 38.2
Psat5g172200 Pisum sativum HOM05D001670 ORTHO05D015028 1.0e-11 76.3 53 64.2
MBI15_g18372_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D005883 5.2e-08 63.9 54 59.3
TPR.G36091 Trifolium pratense HOM05D001046 ORTHO05D005883 6.8e-08 63.5 121 35.5
RcHm_v2.0_Chr1g0334921 Rosa chinensis HOM05D001046 ORTHO05D005883 2.6e-07 61.6 68 45.6
Gohir.A13G103301 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.4e-07 60.8 65 47.7
MELO3C034612.2 Cucumis melo HOM05D001046 ORTHO05D005883 9.9e-07 59.7 103 35.9
Lju470A14T37 Lonicera japonica HOM05D001046 ORTHO05D005883 1.3e-06 59.3 85 40.0
Lju470A13T24 Lonicera japonica HOM05D001046 ORTHO05D005883 4.9e-06 57.4 76 44.7
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 8.4e-06 56.6 87 39.1


User provided reference genes

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