Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 1.1e-86 323.2 156 100.0
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 1.5e-67 259.6 157 84.1
SGA_v2.0_scaffold467G52044 Striga asiatica HOM05D000074 ORTHO05D006342 1.9e-25 119.8 91 74.7
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 7.4e-22 107.8 89 67.4
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 4.2e-17 92.0 89 58.4
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 4.2e-17 92.0 99 54.5
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 7.2e-17 91.3 89 58.4
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.6e-16 90.1 110 48.2
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.7e-16 89.4 89 57.3
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 3.6e-16 89.0 89 55.1
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 6.1e-16 88.2 89 56.2
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 8.0e-16 87.8 94 53.2
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 8.0e-16 87.8 89 53.9
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 8.0e-16 87.8 89 56.2
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 8.0e-16 87.8 89 56.2
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 1.0e-15 87.4 89 55.1
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.4e-15 87.0 89 53.9
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.4e-15 87.0 89 53.9
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.4e-15 87.0 89 52.8
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 1.4e-15 87.0 89 55.1
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 1.8e-15 86.7 89 55.1
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.8e-15 86.7 89 55.1
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 2.3e-15 86.3 89 52.8
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 2.3e-15 86.3 89 52.8
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 3.0e-15 85.9 89 52.8
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.9e-15 85.5 89 53.9
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.9e-15 85.5 89 53.9
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.2e-15 85.1 89 52.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 5.2e-15 85.1 99 49.5
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 6.7e-15 84.7 89 52.8
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 6.7e-15 84.7 89 52.8
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 6.7e-15 84.7 89 55.1
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 6.7e-15 84.7 99 50.5
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 8.8e-15 84.3 89 51.7
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.1e-14 84.0 89 55.1
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.1e-14 84.0 89 51.7
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.1e-14 84.0 89 51.7
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.5e-14 83.6 89 55.1
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.5e-14 83.6 89 55.1
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.5e-14 83.6 89 52.8
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 1.5e-14 83.6 89 52.8
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.0e-14 83.2 89 51.7
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.0e-14 83.2 89 50.6
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 3.3e-14 82.4 89 50.6
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 3.3e-14 82.4 89 50.6
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 4.4e-14 82.0 89 52.8
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 5.7e-14 81.6 89 50.6
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 5.7e-14 81.6 89 52.8
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 5.7e-14 81.6 89 53.9
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 7.4e-14 81.3 89 49.4
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 7.4e-14 81.3 89 50.6
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 7.4e-14 81.3 89 53.9
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 9.7e-14 80.9 89 53.9
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 9.7e-14 80.9 89 53.9
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 9.7e-14 80.9 89 51.7
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 9.7e-14 80.9 89 51.7
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 9.7e-14 80.9 89 52.8
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 9.7e-14 80.9 89 51.7
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.3e-13 80.5 89 51.7
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.3e-13 80.5 89 52.8
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.3e-13 80.5 89 51.7
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.3e-13 80.5 89 51.7
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.7e-13 80.1 89 51.7
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.2e-13 79.7 89 50.6
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.2e-13 79.7 104 47.1
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 2.8e-13 79.3 89 49.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 3.7e-13 79.0 89 49.4
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 3.7e-13 79.0 89 49.4
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 4.8e-13 78.6 84 53.6
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 4.8e-13 78.6 89 50.6
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 4.8e-13 78.6 89 51.7
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 4.8e-13 78.6 89 50.6
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 6.3e-13 78.2 89 49.4
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 8.2e-13 77.8 89 48.3
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.1e-12 77.4 90 47.8
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.4e-12 76.3 128 38.3
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 2.4e-12 76.3 89 47.2
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 3.1e-12 75.9 89 48.3
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 3.1e-12 75.9 89 47.2
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 3.1e-12 75.9 89 47.2
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 4.1e-12 75.5 89 50.6
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 7.0e-12 74.7 89 49.4
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 7.0e-12 74.7 89 49.4
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 7.0e-12 74.7 89 49.4
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 9.1e-12 74.3 89 49.4
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.2e-11 73.9 89 49.4
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.6e-11 73.6 107 42.1
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 2.0e-11 73.2 89 48.3
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 2.6e-11 72.8 40 82.5
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 3.5e-11 72.4 89 48.3
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 3.5e-11 72.4 89 48.3
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 3.5e-11 72.4 89 48.3
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 3.5e-11 72.4 89 48.3
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 4.5e-11 72.0 89 48.3
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-10 70.9 89 47.2
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.2e-10 69.7 90 48.9
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 5.0e-10 68.6 89 47.2
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 6.5e-10 68.2 89 46.1
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 6.5e-10 68.2 89 46.1
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 2.5e-09 66.2 89 46.1
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 3.2e-09 65.9 40 75.0
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.6e-08 63.5 89 41.6
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 2.7e-08 62.8 117 36.8
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 6.1e-08 61.6 70 51.4
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 8.0e-08 61.2 74 41.9
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.0e-07 60.8 76 51.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 3.0e-07 59.3 87 41.4
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 6.7e-07 58.2 66 47.0
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 8.8e-07 57.8 89 41.6
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 1.5e-06 57.0 81 43.2


User provided reference genes

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