Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13097 Striga asiatica HOM05D008254 ORTHO05D010423 1.6e-140 502.7 242 100.0
SGA_v2.0_scaffold32G13109 Striga asiatica HOM05D008254 ORTHO05D010423 5.8e-90 334.7 241 72.6
MSTRG.20136 Avicennia marina HOM05D008254 ORTHO05D010423 2.4e-43 179.9 216 47.2
SalBow6G2473 Salvia bowleyana HOM05D008254 ORTHO05D010423 4.7e-39 165.6 209 46.4
Oeu009760.1 Olea europaea HOM05D008254 ORTHO05D010423 1.7e-33 147.1 210 42.9
Migut.B00312 Erythranthe guttata HOM05D008254 ORTHO05D010423 1.9e-32 143.7 209 43.1
Actinidia00462 Actinidia chinensis HOM05D008254 ORTHO05D010423 2.5e-32 143.3 223 39.5
Duzib132G0754 Durio zibethinus HOM05D008254 ORTHO05D010423 6.7e-30 135.2 228 36.4
Gohir.D02G212300 Gossypium hirsutum HOM05D008254 ORTHO05D010423 6.7e-30 135.2 222 38.3
Gorai.005G240300 Gossypium raimondii HOM05D008254 ORTHO05D010423 1.5e-29 134.0 222 38.3
Sabra09G0080900 Salix brachista HOM05D008254 ORTHO05D010423 2.6e-29 133.3 219 38.8
CSS0044006 Camellia sinensis var. sinensis HOM05D008254 ORTHO05D010423 5.7e-29 132.1 220 40.5
COL.COLO4_32691 Corchorus olitorius HOM05D008254 ORTHO05D010423 5.7e-29 132.1 221 36.7
Thecc.02G097100 Theobroma cacao HOM05D008254 ORTHO05D010423 9.7e-29 131.3 214 36.9
Eucgr.G01497 Eucalyptus grandis HOM05D008254 ORTHO05D010423 2.2e-28 130.2 213 41.8
GSVIVG01031792001 Vitis vinifera HOM05D008254 ORTHO05D010423 2.8e-28 129.8 217 38.2
Cc02_g18530 Coffea canephora HOM05D008254 ORTHO05D010423 3.7e-28 129.4 215 38.6
Potri.009G105900 Populus trichocarpa HOM05D008254 ORTHO05D010423 3.7e-28 129.4 221 40.7
vmacro02178 Vaccinium macrocarpon HOM05D008254 ORTHO05D010423 3.7e-28 129.4 216 38.9
Lsat_1_v5_gn_9_110380 Lactuca sativa HOM05D008254 ORTHO05D010423 2.4e-27 126.7 210 42.9
Hund06184 Selenicereus undatus HOM05D008254 ORTHO05D010423 1.6e-26 124.0 214 36.4
Cpa.g.sc62.40 Carica papaya HOM05D008254 ORTHO05D010423 3.5e-26 122.9 207 38.2
QL11p037484 Quercus lobata HOM05D008254 ORTHO05D010423 3.5e-26 122.9 220 36.4
Nitab4.5_0002673g0060 Nicotiana tabacum HOM05D008254 ORTHO05D010423 4.5e-26 122.5 217 39.6
PGR042G1247 Punica granatum HOM05D008254 ORTHO05D010423 4.5e-26 122.5 213 39.0
Cfa005450 Carpinus fangiana HOM05D008254 ORTHO05D010423 5.9e-26 122.1 223 35.4
TWI31G0737 Tripterygium wilfordii HOM05D008254 ORTHO05D010423 5.9e-26 122.1 213 36.6
Haze_01907 Corylus avellana HOM05D008254 ORTHO05D010423 1.0e-25 121.3 245 35.5
HanXRQChr02g0034931 Helianthus annuus HOM05D008254 ORTHO05D010423 1.3e-25 120.9 208 39.9
HanXRQChr02g0034971 Helianthus annuus HOM05D008254 ORTHO05D010423 1.3e-25 120.9 208 39.9
CiPaw.05G054200 Carya illinoinensis HOM05D008254 ORTHO05D010423 6.5e-25 118.6 223 34.1
PGSC0003DMG400008243 Solanum tuberosum HOM05D008254 ORTHO05D010423 1.9e-24 117.1 217 40.6
Solyc10g150128.1 Solanum lycopersicum HOM05D008254 ORTHO05D010423 3.2e-24 116.3 212 37.3
Sopen10g022350 Solanum pennellii HOM05D008254 ORTHO05D010423 7.2e-24 115.2 217 37.3
CANSAT25G2647 Cannabis sativa HOM05D008254 ORTHO05D010423 4.7e-23 112.5 236 34.3
Nitab4.5_0000876g0150 Nicotiana tabacum HOM05D008254 ORTHO05D010423 1.0e-22 111.3 252 30.6
Rhsim11G0168800 Rhododendron simsii HOM05D000144 ORTHO05D003364 1.4e-22 110.9 218 36.2
PSO017G7184 Papaver somniferum HOM05D008254 ORTHO05D010423 1.5e-21 107.5 239 33.1
Os08g0477600 Oryza sativa ssp. japonica HOM05D008254 ORTHO05D010423 2.6e-21 106.7 235 33.2
PSO170G6160 Papaver somniferum HOM05D008254 ORTHO05D010423 4.4e-21 105.9 241 32.0
HPP92_002305 Vanilla planifolia HOM05D008254 ORTHO05D010423 5.7e-21 105.5 219 34.7
ECA240G0616 Erigeron canadensis HOM05D008254 ORTHO05D010423 7.5e-21 105.1 208 35.6
Oeu009762.1 Olea europaea HOM05D008254 ORTHO05D010423 9.1e-19 98.2 189 36.5
Aqoxy5G01299 Aquilegia oxysepala HOM05D008254 ORTHO05D010423 7.7e-18 95.1 261 30.3
Lj9A360G67 Lonicera japonica HOM05D008254 ORTHO05D010423 7.2e-16 88.6 206 33.0
Zm00001eb038300 Zea mays HOM05D008254 ORTHO05D010423 3.6e-15 86.3 245 31.8
HanXRQChr02g0034911 Helianthus annuus HOM05D008254 ORTHO05D010423 1.4e-14 84.3 178 31.5
MBI06_g07359_MAGBIO Magnolia biondii HOM05D008254 ORTHO05D010423 1.8e-14 84.0 208 31.7
Nn3g20147 Nelumbo nucifera HOM05D008254 ORTHO05D010423 5.2e-14 82.4 76 53.9
Eucgr.B00910 Eucalyptus grandis HOM05D008254 ORTHO05D010423 3.4e-13 79.7 60 60.0
Gohir.A03G191400 Gossypium hirsutum HOM05D008254 ORTHO05D010423 4.1e-11 72.8 96 40.6
Oeu037642.1 Olea europaea HOM05D008254 ORTHO05D010423 5.4e-11 72.4 45 68.9
HanXRQChr08g0217441 Helianthus annuus HOM05D008254 ORTHO05D010423 1.0e-09 68.2 61 52.5
Dinv23586 Davidia involucrata HOM05D008254 ORTHO05D010423 2.9e-09 66.6 96 39.6
Nn1g05870 Nelumbo nucifera HOM05D008254 ORTHO05D010423 2.9e-09 66.6 73 50.7
QL11p037441 Quercus lobata HOM05D008254 ORTHO05D010423 2.9e-09 66.6 49 61.2
Manes.15G142800 Manihot esculenta HOM05D008254 ORTHO05D010423 6.6e-09 65.5 37 73.0
HanXRQChr03g0080261 Helianthus annuus HOM05D008254 ORTHO05D010423 8.6e-09 65.1 36 77.8
HanXRQChr08g0217421 Helianthus annuus HOM05D008254 ORTHO05D010423 8.6e-09 65.1 36 77.8
HanXRQChr12g0367771 Helianthus annuus HOM05D008254 ORTHO05D010423 9.5e-08 61.6 36 75.0
Pp3c8_11550 Physcomitrium patens HOM05D008254 ORTHO05D010423 9.5e-08 61.6 255 26.3
DCAR_003621 Daucus carota HOM05D008254 ORTHO05D010423 4.7e-07 59.3 37 67.6


User provided reference genes

Program Settings