Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 3.8e-157 558.1 288 100.0
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 1.3e-117 426.8 286 80.4
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 5.2e-114 414.8 291 76.3
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 3.2e-111 405.6 288 76.0
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.2e-110 403.7 288 75.7
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 2.1e-110 402.9 290 75.2
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 7.8e-110 401.0 288 74.7
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 5.6e-108 394.8 288 74.0
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 2.2e-104 382.9 295 72.2
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.3e-101 373.6 301 69.8
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 5.6e-100 368.2 304 67.1
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 7.4e-100 367.9 297 70.4
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.1e-99 366.3 309 68.0
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 2.1e-99 366.3 299 69.2
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 2.4e-98 362.8 292 69.2
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 4.0e-98 362.1 301 68.1
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 9.0e-98 360.9 292 70.5
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 3.4e-97 359.0 292 70.2
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 5.8e-97 358.2 291 67.4
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 9.9e-97 357.5 295 68.8
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 1.3e-96 357.1 295 68.8
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 2.9e-96 355.9 293 68.9
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 3.8e-96 355.5 303 66.7
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 6.4e-96 354.8 292 66.1
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 6.4e-96 354.8 299 67.2
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.1e-95 354.0 299 66.6
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.1e-95 354.0 301 67.4
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.4e-95 353.6 300 67.7
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.9e-95 353.2 299 67.6
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.2e-95 352.4 294 69.0
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 4.2e-95 352.1 292 67.1
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 5.5e-95 351.7 296 65.9
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 5.5e-95 351.7 298 67.1
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 5.5e-95 351.7 304 65.1
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 7.1e-95 351.3 299 67.9
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 2.1e-94 349.7 292 69.2
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 2.7e-94 349.4 298 67.4
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.7e-94 349.4 298 67.4
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 2.7e-94 349.4 301 66.1
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 2.7e-94 349.4 291 66.7
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 4.6e-94 348.6 297 68.0
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 4.6e-94 348.6 301 66.1
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 6.0e-94 348.2 292 67.8
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 7.9e-94 347.8 297 66.3
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.3e-93 347.1 285 66.7
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 1.3e-93 347.1 297 66.0
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 1.8e-93 346.7 294 67.7
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.0e-93 345.9 301 64.8
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 8.7e-93 344.4 308 63.6
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 8.7e-93 344.4 301 67.1
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 8.7e-93 344.4 292 66.1
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.1e-92 344.0 297 65.3
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.1e-92 344.0 288 66.7
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.5e-92 343.6 303 64.4
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 1.9e-92 343.2 293 65.9
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 2.5e-92 342.8 219 80.8
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 3.3e-92 342.4 301 63.8
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 3.3e-92 342.4 296 66.9
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.3e-92 342.0 288 66.3
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 4.3e-92 342.0 294 66.0
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 4.3e-92 342.0 291 65.6
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 5.6e-92 341.7 288 66.3
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 5.6e-92 341.7 299 65.2
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 9.6e-92 340.9 286 67.8
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.3e-91 340.5 290 66.9
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 1.3e-91 340.5 300 65.0
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.6e-91 340.1 208 83.7
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 1.6e-91 340.1 287 69.3
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 2.1e-91 339.7 294 67.3
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 3.7e-91 339.0 294 66.0
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.7e-91 339.0 296 65.9
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 3.7e-91 339.0 296 65.9
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 4.8e-91 338.6 294 64.3
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 6.2e-91 338.2 311 63.7
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 8.1e-91 337.8 290 66.2
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 1.1e-90 337.4 310 61.9
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 1.1e-90 337.4 290 64.8
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 1.1e-90 337.4 204 85.3
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.1e-90 337.4 291 64.9
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 2.4e-90 336.3 289 66.4
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 5.3e-90 335.1 300 64.7
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 5.3e-90 335.1 243 74.5
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 2.6e-89 332.8 295 66.8
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.6e-89 332.8 296 65.5
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 3.4e-89 332.4 293 65.2
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 3.4e-89 332.4 289 65.7
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 4.5e-89 332.0 294 64.3
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 7.6e-89 331.3 297 63.0
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 7.6e-89 331.3 244 74.2
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 7.6e-89 331.3 296 64.2
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 1.3e-88 330.5 296 64.5
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.2e-88 329.7 289 66.1
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 4.9e-88 328.6 244 73.4
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.1e-87 327.4 311 63.3
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 1.4e-87 327.0 301 65.1
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 1.9e-87 326.6 289 64.4
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 2.5e-87 326.2 291 65.6
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 2.5e-87 326.2 300 64.0
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 4.2e-87 325.5 300 63.7
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 7.1e-87 324.7 297 63.6
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 7.1e-87 324.7 305 62.3
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 1.2e-86 323.9 308 63.0
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.2e-86 323.9 275 66.2
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 1.2e-86 323.9 215 78.1
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.6e-86 323.6 306 62.7
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.6e-86 323.6 306 62.7
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 2.7e-86 322.8 275 66.9
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 3.5e-86 322.4 304 62.5
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 4.6e-86 322.0 300 62.7
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 6.0e-86 321.6 305 62.3
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 1.0e-85 320.9 309 61.8
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 3.0e-85 319.3 281 64.1
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 3.9e-85 318.9 195 83.1
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 3.9e-85 318.9 195 82.1
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 5.1e-85 318.5 251 70.1
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 5.1e-85 318.5 275 65.8
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.9e-84 316.6 299 62.2
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 2.5e-84 316.2 305 62.3
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 7.4e-84 314.7 299 62.2
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 1.6e-83 313.5 192 81.8
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 2.1e-83 313.2 215 76.3
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 2.1e-83 313.2 368 54.3
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 4.8e-83 312.0 353 56.1
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.1e-79 300.8 266 64.3
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.7e-78 296.2 193 79.8
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 2.7e-78 296.2 259 65.3
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.6e-78 295.8 224 67.9
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 6.1e-78 295.0 321 55.1
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 6.3e-75 285.0 360 50.6
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 1.8e-74 283.5 226 66.8
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 6.9e-74 281.6 190 74.7
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 6.9e-74 281.6 199 73.4
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.5e-73 280.4 224 65.6
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 7.7e-73 278.1 181 76.8
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.7e-72 276.9 281 61.2
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 1.1e-71 274.2 310 55.2
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 1.1e-71 274.2 196 70.9
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.9e-71 273.5 181 74.6
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 3.0e-69 266.2 237 65.0
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 5.1e-69 265.4 188 73.4
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 5.1e-69 265.4 204 67.2
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 6.7e-69 265.0 207 64.3
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 5.7e-68 261.9 227 62.1
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 6.9e-66 255.0 212 62.3
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.1e-55 221.1 181 61.9
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 9.4e-55 218.0 211 58.8
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 1.0e-53 214.5 199 58.8
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.1e-50 204.5 190 58.9
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.1e-50 203.0 194 59.3
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 9.5e-39 164.9 107 83.2
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 1.5e-36 157.5 204 46.6
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 5.7e-36 155.6 192 47.4
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 2.7e-33 146.7 89 78.7
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.7e-33 146.7 120 63.3
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 2.3e-29 133.7 200 38.0
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 3.2e-26 123.2 185 40.5
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 9.2e-26 121.7 103 58.3
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 2.8e-22 110.2 63 85.7
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 8.0e-22 108.6 63 84.1
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 3.1e-21 106.7 87 59.8
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 8.9e-21 105.1 78 73.1
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 8.9e-13 78.6 169 34.9
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 4.9e-11 72.8 60 65.0
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 1.9e-07 60.8 94 41.5


User provided reference genes

Program Settings