Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13022 Striga asiatica HOM05D002044 ORTHO05D005337 1.9e-119 432.6 225 100.0
SGA_v2.0_scaffold225G42999 Striga asiatica HOM05D002044 ORTHO05D005337 6.0e-49 198.4 242 57.0
MSTRG.20199 Avicennia marina HOM05D002044 ORTHO05D005337 1.1e-42 177.6 229 53.7
Rhsim10G0161800 Rhododendron simsii HOM05D002044 ORTHO05D005337 4.2e-42 175.6 241 51.5
Actinidia04375 Actinidia chinensis HOM05D002044 ORTHO05D005337 1.2e-41 174.1 240 51.2
Actinidia05503 Actinidia chinensis HOM05D002044 ORTHO05D005337 1.6e-41 173.7 240 51.2
Rhsim05G0089300 Rhododendron simsii HOM05D002044 ORTHO05D005337 3.5e-41 172.6 241 50.6
vmacro19458 Vaccinium macrocarpon HOM05D002044 ORTHO05D005337 6.0e-41 171.8 241 50.6
Sed0022817 Sechium edule HOM05D002044 ORTHO05D005337 7.9e-41 171.4 241 50.6
Sed0009404 Sechium edule HOM05D002044 ORTHO05D005337 1.0e-40 171.0 249 49.0
Migut.B00409 Erythranthe guttata HOM05D002044 ORTHO05D005337 2.3e-40 169.9 229 50.2
GSVIVG01037888001 Vitis vinifera HOM05D002044 ORTHO05D005337 2.3e-40 169.9 248 47.6
CsaV3_2G035050 Cucumis sativus L. HOM05D002044 ORTHO05D005337 5.1e-40 168.7 249 48.6
SalBow6G3741 Salvia bowleyana HOM05D002044 ORTHO05D005337 5.1e-40 168.7 235 50.2
SalBow6G6092 Salvia bowleyana HOM05D002044 ORTHO05D005337 5.1e-40 168.7 235 50.2
unitig_0.g881 Utricularia gibba HOM05D002044 ORTHO05D005337 1.1e-39 167.5 229 51.1
Oeu011152.1 Olea europaea HOM05D002044 ORTHO05D005337 3.3e-39 166.0 229 50.7
HanXRQChr13g0407801 Helianthus annuus HOM05D002044 ORTHO05D005337 5.7e-39 165.2 239 48.5
Glyma.20G131000 Glycine max HOM05D002044 ORTHO05D005337 7.4e-39 164.9 229 49.8
Potri.001G297900 Populus trichocarpa HOM05D002044 ORTHO05D005337 9.6e-39 164.5 229 49.3
FAN15G0361 Fragaria x ananassa HOM05D002044 ORTHO05D005337 1.3e-38 164.1 229 51.5
Glyma.10G259900 Glycine max HOM05D002044 ORTHO05D005337 1.3e-38 164.1 231 50.2
PGR042G0312 Punica granatum HOM05D002044 ORTHO05D005337 1.3e-38 164.1 229 49.8
FAN27G0061 Fragaria x ananassa HOM05D002044 ORTHO05D005337 2.1e-38 163.3 229 50.2
HanXRQChr10g0288701 Helianthus annuus HOM05D002044 ORTHO05D005337 2.1e-38 163.3 229 50.2
RcHm_v2.0_Chr6g0254341 Rosa chinensis HOM05D002044 ORTHO05D005337 2.1e-38 163.3 229 51.1
Cc02_g19500 Coffea canephora HOM05D002044 ORTHO05D005337 2.8e-38 162.9 230 50.4
DCAR_029099 Daucus carota HOM05D002044 ORTHO05D005337 2.8e-38 162.9 229 49.3
Potri.009G092700 Populus trichocarpa HOM05D002044 ORTHO05D005337 2.8e-38 162.9 230 48.3
FvH4_2g04710 Fragaria vesca HOM05D002044 ORTHO05D005337 4.8e-38 162.2 229 51.1
Peaxi162Scf00925g00012 Petunia axillaris HOM05D002044 ORTHO05D005337 4.8e-38 162.2 230 51.3
Aqoxy6G02802 Aquilegia oxysepala HOM05D002044 ORTHO05D005337 8.2e-38 161.4 237 46.4
FAN24G0835 Fragaria x ananassa HOM05D002044 ORTHO05D005337 8.2e-38 161.4 229 50.7
arahy.Tifrunner.gnm1.ann1.DB7NWR Arachis hypogaea HOM05D002044 ORTHO05D005337 1.1e-37 161.0 243 49.0
CAN.G1156.17 Capsicum annuum HOM05D002044 ORTHO05D005337 1.1e-37 161.0 238 48.3
ECA234G0629 Erigeron canadensis HOM05D002044 ORTHO05D005337 1.1e-37 161.0 229 48.5
Lsat_1_v5_gn_3_25161 Lactuca sativa HOM05D002044 ORTHO05D005337 1.1e-37 161.0 229 49.8
Sabra16G0186700 Salix brachista HOM05D002044 ORTHO05D005337 1.4e-37 160.6 242 46.7
Solyc11g012730.3 Solanum lycopersicum HOM05D002044 ORTHO05D005337 1.4e-37 160.6 238 48.7
Sopen11g007470 Solanum pennellii HOM05D002044 ORTHO05D005337 1.4e-37 160.6 238 48.7
VMungo0720G1876 Vigna mungo HOM05D002044 ORTHO05D005337 1.4e-37 160.6 231 48.5
Hma1.2p1_0375F.1_g138885 Hydrangea macrophylla HOM05D002044 ORTHO05D005337 1.8e-37 160.2 246 46.3
CSS0022335 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 2.4e-37 159.8 240 48.3
CiPaw.05G013900 Carya illinoinensis HOM05D002044 ORTHO05D005337 2.4e-37 159.8 240 47.9
Dinv16042 Davidia involucrata HOM05D002044 ORTHO05D005337 2.4e-37 159.8 230 50.4
Haze_10209 Corylus avellana HOM05D002044 ORTHO05D005337 3.1e-37 159.5 241 47.3
Medtr1g106955 Medicago truncatula HOM05D002044 ORTHO05D005337 3.1e-37 159.5 229 50.2
Psat6g216480 Pisum sativum HOM05D002044 ORTHO05D005337 3.1e-37 159.5 230 49.6
arahy.Tifrunner.gnm1.ann1.E7DDSD Arachis hypogaea HOM05D002044 ORTHO05D005337 4.1e-37 159.1 230 50.4
arahy.Tifrunner.gnm1.ann1.JSZB3T Arachis hypogaea HOM05D002044 ORTHO05D005337 4.1e-37 159.1 230 50.4
ClCG02G008580 Citrullus lanatus HOM05D002044 ORTHO05D005337 4.1e-37 159.1 240 48.8
Sabra09G0071300 Salix brachista HOM05D002044 ORTHO05D005337 4.1e-37 159.1 230 48.3
Cfa004613 Carpinus fangiana HOM05D002044 ORTHO05D005337 5.3e-37 158.7 241 47.3
MD05G1093600 Malus domestica HOM05D002044 ORTHO05D005337 5.3e-37 158.7 229 49.3
Hund06300 Selenicereus undatus HOM05D002044 ORTHO05D005337 5.3e-37 158.7 228 49.6
MBI14_g09419_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005337 6.9e-37 158.3 241 47.7
COL.COLO4_32562 Corchorus olitorius HOM05D002044 ORTHO05D005337 9.0e-37 157.9 238 47.1
Dinv42209 Davidia involucrata HOM05D002044 ORTHO05D005337 9.0e-37 157.9 241 49.0
Lsat_1_v5_gn_6_99560 Lactuca sativa HOM05D000288 ORTHO05D005337 9.0e-37 157.9 230 49.1
Lalb_Chr21g0308221 Lupinus albus HOM05D002044 ORTHO05D005337 9.0e-37 157.9 230 48.7
Phvul.007G042300 Phaseolus vulgaris HOM05D002044 ORTHO05D005337 9.0e-37 157.9 230 47.8
PGSC0003DMG400013301 Solanum tuberosum HOM05D002044 ORTHO05D005337 9.0e-37 157.9 240 47.5
Prupe.8G138300 Prunus persica HOM05D002044 ORTHO05D005337 1.2e-36 157.5 229 48.9
QL11p032343 Quercus lobata HOM05D002044 ORTHO05D005337 1.2e-36 157.5 228 46.5
Manes.07G065600 Manihot esculenta HOM05D002044 ORTHO05D005337 1.5e-36 157.1 230 47.8
Lj5A216T105 Lonicera japonica HOM05D002044 ORTHO05D005337 2.0e-36 156.8 231 50.2
CSS0041438 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 2.6e-36 156.4 248 47.2
Duzib248G0129 Durio zibethinus HOM05D002044 ORTHO05D005337 2.6e-36 156.4 242 48.8
Hma1.2p1_1518F.1_g288530 Hydrangea macrophylla HOM05D002044 ORTHO05D005337 2.6e-36 156.4 240 46.2
Nitab4.5_0010237g0020 Nicotiana tabacum HOM05D002044 ORTHO05D005337 2.6e-36 156.4 239 47.7
Sc08g0001210 Simmondsia chinensis HOM05D002044 ORTHO05D005337 3.4e-36 156.0 240 46.2
TPR.G34538 Trifolium pratense HOM05D002044 ORTHO05D005337 3.4e-36 156.0 230 49.1
Lalb_Chr06g0165321 Lupinus albus HOM05D002044 ORTHO05D005337 4.5e-36 155.6 240 45.0
Lj5g0028080 Lotus japonicus HOM05D002044 ORTHO05D005337 7.6e-36 154.8 230 47.4
CSS0033320 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 1.3e-35 154.1 248 46.4
Nitab4.5_0003534g0050 Nicotiana tabacum HOM05D002044 ORTHO05D005337 1.3e-35 154.1 229 48.5
Nitab4.5_0002441g0030 Nicotiana tabacum HOM05D002044 ORTHO05D005337 1.7e-35 153.7 229 48.0
TAR625G0358 Trochodendron aralioides HOM05D002044 ORTHO05D005337 1.7e-35 153.7 240 46.2
Atru.chr12.1082 Acer truncatum HOM05D002044 ORTHO05D005337 2.2e-35 153.3 248 44.4
Ah.01g018420 Amaranthus hybridus HOM05D002044 ORTHO05D005337 2.2e-35 153.3 240 47.5
TPR.G27108 Trifolium pratense HOM05D002044 ORTHO05D005337 2.9e-35 152.9 230 48.3
Eucgr.G01295 Eucalyptus grandis HOM05D002044 ORTHO05D005337 5.0e-35 152.1 230 47.0
Thecc.02G112200 Theobroma cacao HOM05D002044 ORTHO05D005337 5.0e-35 152.1 231 48.1
CSS0012634 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 6.5e-35 151.8 239 46.4
Ca_11053_v3 Cicer arietinum L. HOM05D002044 ORTHO05D005337 1.1e-34 151.0 230 47.8
ATR0753G080 Amborella trichopoda HOM05D002044 ORTHO05D005337 1.4e-34 150.6 230 49.1
CDE04G1739 Ceratophyllum demersum HOM05D002044 ORTHO05D005337 1.4e-34 150.6 240 45.0
Ciclev10029279m.g Citrus clementina HOM05D002044 ORTHO05D005337 1.9e-34 150.2 249 45.4
HPP92_024630 Vanilla planifolia HOM05D002044 ORTHO05D005337 3.2e-34 149.4 230 46.1
EL10Ac9g22245 Beta vulgaris HOM05D002044 ORTHO05D005337 7.2e-34 148.3 230 45.2
AUR62010336 Chenopodium quinoa HOM05D002044 ORTHO05D005337 7.2e-34 148.3 231 46.3
PSO675G8768 Papaver somniferum HOM05D002044 ORTHO05D005337 9.3e-34 147.9 229 45.9
Duzib132G1163 Durio zibethinus HOM05D002044 ORTHO05D005337 1.2e-33 147.5 242 46.7
CSS0030744 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 2.7e-33 146.4 233 45.5
Cpa.g.sc292.6 Carica papaya HOM05D002044 ORTHO05D005337 2.7e-33 146.4 230 47.4
PSO541G3790 Papaver somniferum HOM05D002044 ORTHO05D005337 2.7e-33 146.4 229 45.4
CDE02G0142 Ceratophyllum demersum HOM05D002044 ORTHO05D005337 3.5e-33 146.0 229 44.5
Zm00001eb178370 Zea mays HOM05D002044 ORTHO05D005337 4.6e-33 145.6 231 43.3
TWI79G1456 Tripterygium wilfordii HOM05D002044 ORTHO05D005337 6.1e-33 145.2 241 46.1
PSO017G0285 Papaver somniferum HOM05D002044 ORTHO05D005337 7.9e-33 144.8 229 44.5
Carub.0003s3323 Capsella rubella HOM05D002044 ORTHO05D005337 1.8e-32 143.7 229 44.5
Os08g0250700 Oryza sativa ssp. japonica HOM05D002044 ORTHO05D005337 1.8e-32 143.7 229 44.1
AT3G25580 Arabidopsis thaliana HOM05D002044 ORTHO05D005337 2.3e-32 143.3 229 44.1
THA.LOC104819545 Tarenaya hassleriana HOM05D002044 ORTHO05D005337 3.0e-32 142.9 229 45.0
AL5G14080 Arabidopsis lyrata HOM05D002044 ORTHO05D005337 5.1e-32 142.1 229 43.7
Carub.0005s0334 Capsella rubella HOM05D002044 ORTHO05D005337 5.1e-32 142.1 229 43.7
TWI75G1328 Tripterygium wilfordii HOM05D002044 ORTHO05D005337 8.7e-32 141.4 230 45.2
CARHR242500 Cardamine hirsuta HOM05D002044 ORTHO05D005337 1.5e-31 140.6 230 44.8
FAN20G2696 Fragaria x ananassa HOM05D002044 ORTHO05D005337 1.5e-31 140.6 196 50.0
Sp7g32070 Schrenkiella parvula HOM05D002044 ORTHO05D005337 1.5e-31 140.6 229 44.1
AL3G52920 Arabidopsis lyrata HOM05D002044 ORTHO05D005337 1.9e-31 140.2 230 45.2
Sp3g32230 Schrenkiella parvula HOM05D002044 ORTHO05D005337 1.9e-31 140.2 229 43.2
C01p04500 Brassica napus HOM05D002044 ORTHO05D005337 2.5e-31 139.8 229 44.1
BolC1t00436H Brassica oleracea HOM05D002044 ORTHO05D005337 3.3e-31 139.4 229 44.1
CSS0042304 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 3.3e-31 139.4 249 43.8
A01p04130 Brassica napus HOM05D002044 ORTHO05D005337 4.3e-31 139.0 229 43.7
BraA01t00402Z Brassica rapa HOM05D002044 ORTHO05D005337 4.3e-31 139.0 229 43.7
AT2G18990 Arabidopsis thaliana HOM05D002044 ORTHO05D005337 5.7e-31 138.7 230 45.2
Thhalv10026241m.g Eutrema salsugineum HOM05D002044 ORTHO05D005337 5.7e-31 138.7 229 43.2
Gohir.D02G206500 Gossypium hirsutum HOM05D002044 ORTHO05D005337 7.4e-31 138.3 242 45.9
Thhalv10022846m.g Eutrema salsugineum HOM05D002044 ORTHO05D005337 9.7e-31 137.9 229 43.2
Aa31LG2G20360 Aethionema arabicum HOM05D002044 ORTHO05D005337 2.2e-30 136.7 230 43.0
Gohir.A03G185000 Gossypium hirsutum HOM05D002044 ORTHO05D005337 2.8e-30 136.3 242 45.9
Gorai.005G233900 Gossypium raimondii HOM05D002044 ORTHO05D005337 3.7e-30 136.0 242 45.5
Nn5g30477 Nelumbo nucifera HOM05D002044 ORTHO05D005337 1.1e-29 134.4 199 46.2
Rhsim12G0107800 Rhododendron simsii HOM05D002044 ORTHO05D005337 7.7e-28 128.3 114 64.9
Oeu013764.1 Olea europaea HOM05D002044 ORTHO05D005337 1.4e-26 124.0 113 66.4
Pp3c8_16300 Physcomitrium patens HOM05D002044 ORTHO05D005337 2.5e-26 123.2 233 40.3
MELO3C019253.2 Cucumis melo HOM05D002044 ORTHO05D005337 4.2e-26 122.5 113 64.6
CSS0022955 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 7.2e-26 121.7 229 41.9
BcaNung04161 Brassica carinata HOM05D002044 ORTHO05D005337 1.6e-25 120.6 229 40.6
Mapoly0048s0065 Marchantia polymorpha HOM05D002044 ORTHO05D005337 7.9e-25 118.2 227 38.8
CBR_g41441 Chara braunii HOM05D002044 ORTHO05D005337 2.2e-22 110.2 243 36.6
Aa31sc18G120 Aethionema arabicum HOM05D002044 ORTHO05D005337 1.8e-21 107.1 111 57.7
SEGI_15660 Sequoiadendron giganteum HOM05D002044 ORTHO05D005337 6.9e-21 105.1 121 51.2
Glyma.15G219600 Glycine max HOM05D002044 ORTHO05D005337 4.5e-20 102.4 158 44.3
SMO367G0382 Selaginella moellendorffii HOM05D002044 ORTHO05D005337 2.2e-19 100.1 112 51.8
BcaNung04990 Brassica carinata HOM05D002044 ORTHO05D005337 2.9e-19 99.8 108 57.4
C07p60480 Brassica napus HOM05D002044 ORTHO05D005337 1.9e-18 97.1 113 54.0
BolC7t46480H Brassica oleracea HOM05D002044 ORTHO05D005337 1.9e-18 97.1 113 54.0
MBI14_g22154_MAGBIO Magnolia biondii HOM05D002044 ORTHO05D005337 9.4e-18 94.7 199 38.2
C07p60500 Brassica napus HOM05D002044 ORTHO05D005337 7.9e-17 91.7 110 56.4
RcHm_v2.0_Chr6g0254381 Rosa chinensis HOM05D002044 ORTHO05D005337 7.9e-17 91.7 75 65.3
AagrBONN_evm.TU.Sc2ySwM_228.3117 Anthoceros agrestis HOM05D002044 ORTHO05D005337 1.0e-16 91.3 112 50.0
Peaxi162Scf00677g00216 Petunia axillaris HOM05D002044 ORTHO05D005337 2.3e-16 90.1 81 61.7
A03p62780 Brassica napus HOM05D002044 ORTHO05D005337 3.0e-16 89.7 99 57.6
MCO11G837 Micromonas commoda HOM05D002044 ORTHO05D005337 5.1e-16 89.0 205 34.6
Cre01.g037800 Chlamydomonas reinhardtii HOM05D002044 ORTHO05D005337 5.7e-15 85.5 236 30.1
CARHR146540 Cardamine hirsuta HOM05D002044 ORTHO05D005337 7.4e-15 85.1 145 42.1
CAN.G587.70 Capsicum annuum HOM05D002044 ORTHO05D005337 1.1e-13 81.3 93 57.0
Lsat_1_v5_gn_5_114660 Lactuca sativa HOM05D002044 ORTHO05D019245 1.2e-12 77.8 101 52.5
PRCOL_00005050 Prasinoderma coloniale HOM05D002044 ORTHO05D005337 1.6e-12 77.4 215 29.3
CSS0000930 Camellia sinensis var. sinensis HOM05D002044 ORTHO05D005337 8.0e-09 65.1 53 69.8
Sc08g0001240 Simmondsia chinensis HOM05D002044 ORTHO05D005337 1.8e-08 63.9 59 57.6
Nn1g04647 Nelumbo nucifera HOM05D002044 ORTHO05D005337 2.3e-08 63.5 42 73.8
ECA248G0245 Erigeron canadensis HOM05D000121 ORTHO05D000102 4.0e-08 62.8 42 73.8
MCO09G765 Micromonas commoda HOM05D002044 ORTHO05D005000 2.0e-07 60.5 218 28.0
SMO164G0166 Selaginella moellendorffii HOM05D002044 ORTHO05D005000 9.7e-07 58.2 85 36.5
ATR0564G141 Amborella trichopoda HOM05D002044 ORTHO05D005000 1.3e-06 57.8 113 31.9
Pp3c17_20760 Physcomitrium patens HOM05D002044 ORTHO05D005000 3.7e-06 56.2 80 38.8
MELO3C010633.2 Cucumis melo HOM05D002044 ORTHO05D005000 4.8e-06 55.8 116 37.1
CsaV3_6G034240 Cucumis sativus L. HOM05D002044 ORTHO05D005000 4.8e-06 55.8 113 38.1


User provided reference genes

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