Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 6.4e-257 890.2 430 100.0
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 1.5e-160 570.1 408 71.1
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 6.3e-148 528.1 408 66.7
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.2e-143 513.8 410 63.4
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 7.8e-138 494.6 409 63.1
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.5e-136 490.3 416 61.5
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 2.0e-133 479.9 415 59.0
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.0e-133 479.9 510 52.4
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.7e-130 469.5 416 59.4
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.7e-130 469.5 416 59.4
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 2.7e-130 469.5 411 60.1
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 3.5e-130 469.2 417 58.8
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 5.1e-129 465.3 412 59.2
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.9e-128 463.4 412 59.0
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.1e-127 459.9 412 58.7
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 8.1e-127 458.0 426 57.7
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.1e-126 456.1 416 57.0
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.0e-125 453.4 410 59.3
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.3e-124 450.7 406 57.9
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.2e-124 449.9 412 57.3
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 4.9e-124 448.7 414 57.7
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.4e-124 448.4 437 55.4
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 1.1e-123 447.6 413 57.4
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.6e-122 443.7 417 57.1
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 2.1e-122 443.4 424 56.4
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.7e-122 443.0 414 56.3
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 3.5e-122 442.6 412 57.0
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 7.8e-122 441.4 418 58.1
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.3e-121 440.7 426 55.6
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 1.7e-121 440.3 408 57.4
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.3e-121 439.9 423 55.6
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 2.3e-121 439.9 413 57.1
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 3.9e-121 439.1 414 57.2
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 6.6e-121 438.3 408 57.6
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 8.6e-121 438.0 412 56.6
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 8.6e-121 438.0 442 54.5
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 4.3e-120 435.6 409 56.7
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 5.6e-120 435.3 410 56.8
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 5.6e-120 435.3 412 55.8
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 7.3e-120 434.9 438 54.3
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.6e-119 433.7 407 55.0
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 3.6e-119 432.6 410 57.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 6.2e-119 431.8 431 55.0
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 6.2e-119 431.8 426 56.6
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 1.1e-118 431.0 409 56.7
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.4e-118 430.6 411 55.7
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.8e-118 430.3 432 55.3
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 4.0e-118 429.1 424 55.0
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 5.2e-118 428.7 407 54.8
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.0e-117 426.8 440 52.3
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 2.0e-117 426.8 418 55.5
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 3.4e-117 426.0 417 54.9
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 7.6e-117 424.9 400 57.5
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 7.6e-117 424.9 404 55.2
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 9.9e-117 424.5 423 53.4
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 9.9e-117 424.5 408 56.4
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.3e-116 424.1 415 54.9
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.3e-116 424.1 421 54.4
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 1.7e-116 423.7 415 54.9
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.7e-116 423.7 407 54.8
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.2e-116 423.3 431 53.6
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.9e-116 422.9 408 56.1
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 2.9e-116 422.9 416 52.6
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 4.9e-116 422.2 428 52.6
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.9e-116 422.2 410 55.6
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 6.4e-116 421.8 427 53.4
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.9e-115 420.2 420 53.8
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.4e-115 419.9 420 53.8
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.2e-115 419.5 422 54.0
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 4.2e-115 419.1 427 53.6
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.4e-115 418.7 402 57.0
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 5.4e-115 418.7 420 53.1
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-114 417.2 420 53.6
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.1e-114 416.8 428 52.6
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.1e-114 416.8 422 52.8
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.5e-114 416.0 413 52.5
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.6e-114 415.6 419 53.5
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 6.0e-114 415.2 423 53.7
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.0e-113 412.9 422 53.6
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 5.1e-113 412.1 409 55.3
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.1e-112 411.0 428 53.5
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.9e-112 410.2 409 55.5
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 9.6e-112 407.9 408 52.5
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 9.6e-112 407.9 428 53.5
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.1e-111 406.8 405 54.3
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 3.6e-111 406.0 409 56.0
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 4.8e-111 405.6 426 54.5
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.2e-111 405.2 434 52.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.1e-110 404.4 418 53.3
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.4e-110 404.1 394 56.1
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.2e-109 401.0 409 52.8
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 2.6e-109 399.8 416 52.2
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 9.9e-109 397.9 412 53.2
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.9e-109 397.9 409 52.8
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 1.7e-108 397.1 429 49.9
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 3.8e-108 396.0 416 52.6
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 4.9e-108 395.6 426 52.3
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 4.9e-108 395.6 417 54.0
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 6.4e-108 395.2 426 52.1
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.1e-107 394.4 412 52.4
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.1e-107 394.4 416 52.4
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.4e-107 394.0 409 52.3
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.9e-107 393.7 419 53.2
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 3.2e-107 392.9 414 52.4
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 3.2e-107 392.9 414 52.4
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 5.4e-107 392.1 416 52.2
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 7.1e-107 391.7 394 53.0
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 9.3e-107 391.3 419 52.5
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 6.0e-106 388.7 419 52.7
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 7.8e-106 388.3 418 52.2
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 2.3e-105 386.7 419 52.3
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.0e-105 386.3 424 50.9
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.1e-104 384.4 440 48.6
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 2.5e-104 383.3 412 52.7
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 5.6e-104 382.1 432 47.9
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.8e-102 377.1 409 51.6
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.2e-101 374.4 385 51.7
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.0e-101 373.6 405 52.1
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.0e-101 373.6 427 49.6
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 5.8e-101 372.1 436 49.8
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 7.6e-101 371.7 408 50.7
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 4.9e-100 369.0 384 55.5
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 1.9e-99 367.1 404 49.8
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 2.1e-98 363.6 419 49.6
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 2.7e-98 363.2 404 50.2
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 4.6e-98 362.5 408 50.7
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 8.7e-97 358.2 381 51.7
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 3.4e-93 346.3 419 47.0
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 4.2e-91 339.3 393 50.6
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.0e-84 318.2 387 46.8
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.7e-84 317.4 428 43.7
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 8.7e-81 305.1 430 42.8
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 4.2e-75 286.2 410 42.7
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 7.2e-75 285.4 417 40.8
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 1.2e-69 268.1 178 76.4
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.9e-67 260.8 209 66.5
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.4e-65 254.6 211 65.9
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.8e-65 254.2 381 44.4
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 6.7e-65 252.3 401 39.2
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 9.7e-64 248.4 420 39.5
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 5.3e-62 242.7 234 61.1
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.6e-58 229.9 306 43.1
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-55 221.5 219 57.5
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.3e-55 221.5 219 57.5
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 8.2e-55 218.8 443 33.9
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 3.5e-53 213.4 411 33.8
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 4.2e-51 206.5 136 76.5
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.0e-49 201.8 230 47.8
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.8e-49 201.1 404 34.2
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.3e-49 200.7 416 33.7
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.4e-46 191.4 303 36.6
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 4.5e-45 186.4 174 57.5
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 2.5e-43 180.6 126 61.9
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.9e-31 139.8 115 57.4
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 2.3e-28 131.0 71 78.9
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.8e-25 121.3 399 28.6
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.0e-24 117.9 381 27.3
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.3e-23 115.2 65 73.8
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.4e-16 90.5 63 69.8
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 1.7e-15 88.2 78 59.0
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 8.9e-09 65.9 33 78.8


User provided reference genes

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