Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 4.2e-116 421.4 218 100.0
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 9.2e-87 323.9 220 77.7
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 3.6e-83 312.0 218 74.8
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 6.4e-80 301.2 218 70.2
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 4.8e-59 231.9 225 59.1
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.8e-58 229.9 227 59.9
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.1e-58 229.2 223 57.0
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.2e-57 227.3 223 57.0
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 5.8e-57 224.9 222 59.5
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 2.2e-56 223.0 222 59.5
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 2.9e-56 222.6 222 59.0
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 2.4e-55 219.5 213 56.8
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 7.1e-55 218.0 228 58.8
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 9.3e-55 217.6 174 66.1
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 9.3e-55 217.6 242 55.0
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 1.2e-54 217.2 227 55.9
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 1.2e-54 217.2 207 58.9
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 3.5e-54 215.7 169 66.3
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 4.6e-54 215.3 221 52.9
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 2.3e-53 213.0 224 56.7
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 2.3e-53 213.0 224 57.6
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 3.9e-53 212.2 200 57.5
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 5.1e-53 211.8 224 54.5
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 6.7e-53 211.5 223 57.8
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 6.7e-53 211.5 223 57.8
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.1e-52 210.7 202 57.9
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.9e-52 209.9 173 63.0
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.9e-52 209.9 173 63.0
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 2.5e-52 209.5 220 53.2
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 4.3e-52 208.8 173 63.6
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 4.3e-52 208.8 226 55.8
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 5.6e-52 208.4 200 56.0
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 1.3e-51 207.2 223 54.3
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.6e-51 206.8 182 60.4
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.6e-51 206.8 182 60.4
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.6e-51 206.8 216 56.5
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 2.1e-51 206.5 221 55.2
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 2.8e-51 206.1 173 62.4
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 2.8e-51 206.1 196 57.7
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 4.8e-51 205.3 175 62.9
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 4.8e-51 205.3 223 55.2
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 1.1e-50 204.1 220 56.4
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.4e-50 203.8 182 59.3
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.4e-50 203.8 220 55.0
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.4e-50 203.0 206 55.3
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 2.4e-50 203.0 219 55.3
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 2.4e-50 203.0 197 59.4
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.0e-50 202.2 224 51.8
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 4.0e-50 202.2 231 51.9
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 4.0e-50 202.2 232 52.2
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 5.3e-50 201.8 173 62.4
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 5.3e-50 201.8 146 71.9
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 9.0e-50 201.1 212 56.6
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.2e-49 200.7 195 58.5
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 2.0e-49 199.9 173 60.7
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.6e-49 199.5 224 52.2
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 2.6e-49 199.5 189 59.8
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 4.5e-49 198.7 209 56.5
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 4.5e-49 198.7 174 62.1
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 5.8e-49 198.4 172 62.2
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 7.6e-49 198.0 227 51.5
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 7.6e-49 198.0 224 51.8
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.0e-48 197.6 226 53.1
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.3e-48 197.2 224 51.8
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 1.3e-48 197.2 187 56.7
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 1.7e-48 196.8 156 66.0
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.7e-48 196.8 188 58.5
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.2e-48 196.4 219 52.5
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 2.2e-48 196.4 188 58.0
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 3.8e-48 195.7 182 59.9
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 4.9e-48 195.3 191 59.7
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 6.5e-48 194.9 175 60.0
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 8.4e-48 194.5 183 56.3
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.4e-47 193.7 191 58.1
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 2.5e-47 193.0 224 51.8
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 2.5e-47 193.0 141 74.5
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 3.2e-47 192.6 276 47.5
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.2e-46 190.7 181 59.1
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 2.7e-46 189.5 247 46.6
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 4.6e-46 188.7 229 49.8
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.6e-46 188.7 157 65.0
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 4.6e-46 188.7 155 65.2
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 5.1e-45 185.3 168 58.9
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 5.1e-45 185.3 160 62.5
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 1.1e-44 184.1 189 56.6
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 3.3e-44 182.6 197 52.8
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 4.3e-44 182.2 191 55.0
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 5.7e-44 181.8 194 52.6
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 5.7e-44 181.8 192 54.2
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 5.7e-44 181.8 192 54.7
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 9.6e-44 181.0 189 54.5
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 2.1e-43 179.9 191 53.4
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 2.8e-43 179.5 158 59.5
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 4.8e-43 178.7 191 52.9
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 6.3e-43 178.3 191 56.0
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.1e-42 177.6 191 52.9
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 1.1e-42 177.6 195 51.8
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.1e-42 177.6 191 52.9
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 1.1e-42 177.6 191 52.4
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 2.4e-42 176.4 191 51.8
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 2.4e-42 176.4 147 62.6
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 5.3e-42 175.3 188 54.8
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 5.3e-42 175.3 230 50.4
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 9.0e-42 174.5 156 57.1
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 3.4e-41 172.6 155 58.1
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.0e-40 171.0 212 48.1
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 1.0e-40 171.0 225 48.9
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 6.5e-40 168.3 219 51.1
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 8.5e-40 167.9 181 53.0
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 3.6e-38 162.5 193 48.2
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 3.6e-38 162.5 171 54.4
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 3.6e-38 162.5 184 57.1
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.0e-37 161.0 185 48.6
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 3.0e-37 159.5 173 53.8
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 6.3e-35 151.8 190 52.1
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 5.3e-34 148.7 137 56.2
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 1.3e-32 144.1 141 58.9
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.7e-32 143.7 153 53.6
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 2.2e-32 143.3 147 59.2
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 1.6e-30 137.1 112 66.1
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 2.1e-30 136.7 115 67.8
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 4.6e-30 135.6 173 46.2
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 5.7e-28 128.6 164 46.3
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 4.8e-27 125.6 97 69.1
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.1e-26 124.4 147 51.7
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 1.8e-26 123.6 167 44.3
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 1.3e-24 117.5 150 47.3
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.2e-24 116.7 85 64.7
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 3.2e-23 112.8 187 40.6
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.6e-20 103.2 153 47.7
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 1.3e-19 100.9 173 40.5
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 6.3e-19 98.6 155 43.9
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 9.1e-18 94.7 101 54.5
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.3e-16 90.9 135 48.9
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.8e-16 89.4 201 36.8
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 5.0e-16 89.0 142 40.8
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 6.5e-16 88.6 88 58.0
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 6.5e-16 88.6 116 47.4
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 2.1e-14 83.6 80 61.2
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 2.7e-14 83.2 103 52.4
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 3.6e-14 82.8 145 39.3
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 3.3e-12 76.3 142 37.3
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-12 74.7 71 57.7
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.8e-11 73.2 50 70.0
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 8.2e-11 71.6 87 43.7
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 1.5e-07 60.8 86 50.0
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.2e-06 57.8 134 33.6
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 1.2e-06 57.8 70 47.1
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.6e-06 56.2 42 64.3
PRCOL_00004960 Prasinoderma coloniale HOM05D005311 ORTHO05D006160 6.1e-06 55.5 163 33.7
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 8.0e-06 55.1 132 31.8


User provided reference genes

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