Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 0.0e+00 1452.6 782 100.0
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 6.5e-183 645.2 899 52.6
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 5.4e-121 439.5 904 40.8
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 4.6e-96 356.7 946 37.2
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 6.7e-87 326.2 817 38.9
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 6.7e-87 326.2 817 38.9
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.9e-86 324.7 881 37.0
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 9.0e-84 315.8 855 35.0
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 8.7e-79 299.3 832 34.7
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 5.1e-71 273.5 896 33.0
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 7.9e-64 249.6 936 29.6
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 7.9e-64 249.6 902 32.7
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 3.0e-63 247.7 897 34.1
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 8.8e-63 246.1 876 31.8
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.3e-62 243.8 860 34.2
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 5.7e-62 243.4 854 34.1
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 3.7e-61 240.7 914 31.8
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 3.7e-61 240.7 864 34.3
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 1.8e-60 238.4 859 32.1
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 6.9e-60 236.5 861 32.6
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.2e-59 235.7 876 30.1
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 5.9e-59 233.4 912 31.4
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 1.7e-58 231.9 873 31.2
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 8.5e-58 229.6 873 31.0
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.6e-56 225.3 889 30.0
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 3.7e-53 214.2 943 29.3
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 4.5e-51 207.2 823 30.1
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 1.5e-49 202.2 818 30.6
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.5e-49 202.2 952 30.6
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 5.5e-49 200.3 892 27.8
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 6.1e-48 196.8 926 30.0
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.4e-47 195.7 861 30.4
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.0e-46 191.8 901 28.1
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 4.4e-46 190.7 861 29.2
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 3.7e-45 187.6 902 31.2
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 3.7e-45 187.6 745 30.6
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 2.4e-44 184.9 869 28.3
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 7.0e-44 183.3 999 29.2
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.0e-43 181.8 915 29.4
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 3.5e-43 181.0 884 29.4
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 7.7e-43 179.9 898 29.5
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 3.8e-42 177.6 943 26.4
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.5e-42 176.4 897 29.4
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.9e-41 175.3 865 29.4
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 1.9e-41 175.3 993 27.8
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 1.9e-41 175.3 793 28.5
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 2.1e-40 171.8 770 28.8
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 2.1e-40 171.8 791 27.8
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 8.0e-40 169.9 937 28.0
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 1.8e-39 168.7 881 27.8
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 5.2e-39 167.2 295 41.0
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 6.8e-39 166.8 986 28.1
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 1.2e-38 166.0 881 30.0
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 7.5e-38 163.3 911 29.0
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 1.7e-37 162.2 892 27.1
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 8.3e-37 159.8 891 27.6
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 1.8e-36 158.7 891 28.4
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.4e-36 158.3 892 27.6
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.4e-36 158.3 930 27.3
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 3.1e-36 157.9 901 27.9
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 7.0e-36 156.8 893 28.0
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 7.0e-36 156.8 799 28.8
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 9.1e-36 156.4 901 29.6
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.9e-35 153.7 878 29.3
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.0e-34 152.9 845 27.1
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 1.3e-34 152.5 849 26.6
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.9e-34 151.4 795 28.7
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 5.0e-34 150.6 926 27.3
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 5.0e-34 150.6 890 29.1
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 6.5e-34 150.2 848 26.3
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 8.5e-34 149.8 888 25.8
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.9e-33 148.7 859 26.9
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.5e-33 148.3 795 28.3
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 7.2e-33 146.7 836 27.5
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 9.4e-33 146.4 839 26.8
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.6e-32 145.6 811 27.3
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 6.1e-32 143.7 861 26.7
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 8.0e-32 143.3 832 27.5
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 1.4e-31 142.5 829 27.7
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 2.3e-31 141.7 884 27.9
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 3.0e-31 141.4 966 25.9
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 6.8e-31 140.2 874 27.0
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 3.4e-30 137.9 953 27.5
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 4.4e-30 137.5 918 27.7
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 1.7e-29 135.6 846 25.2
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 3.7e-29 134.4 884 27.3
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 6.3e-29 133.7 897 26.4
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 8.3e-29 133.3 881 28.8
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 4.5e-27 127.5 560 28.2
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 7.7e-27 126.7 941 28.9
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 7.7e-27 126.7 951 25.3
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 7.7e-27 126.7 267 38.6
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 1.0e-26 126.3 884 25.9
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.3e-26 125.2 795 29.2
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.9e-25 122.1 168 46.4
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 4.3e-25 120.9 251 39.8
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 1.6e-24 119.0 858 26.1
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 2.1e-24 118.6 894 25.3
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 2.8e-24 118.2 867 25.5
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.2e-22 112.8 371 31.3
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.5e-22 112.5 921 24.9
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.7e-22 110.5 903 25.9
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.3e-21 109.4 892 24.4
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 6.4e-21 107.1 900 25.0
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 6.4e-21 107.1 307 36.2
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 8.3e-21 106.7 260 37.3
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 7.0e-20 103.6 887 25.7
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 9.2e-20 103.2 920 25.5
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 4.6e-19 100.9 936 24.9
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.3e-18 99.4 918 25.6
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 1.3e-18 99.4 899 24.6
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 2.3e-18 98.6 879 24.9
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 8.6e-18 96.7 869 25.4
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 2.5e-17 95.1 902 23.6
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 3.3e-17 94.7 941 24.0
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 7.3e-17 93.6 853 24.7
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 2.1e-16 92.0 905 24.1
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 3.6e-16 91.3 173 41.0
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 8.0e-16 90.1 228 36.4
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 4.0e-15 87.8 916 22.9
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 4.0e-15 87.8 110 51.8
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 3.4e-14 84.7 905 23.9
BolC5t30206H Brassica oleracea HOM05D004628 ORTHO05D005166 3.7e-13 81.3 887 25.1
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 4.9e-13 80.9 259 30.5
HPP92_001855 Vanilla planifolia HOM05D004628 ORTHO05D005166 6.4e-13 80.5 832 24.3
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.2e-11 76.3 957 23.5
ATR0767G029 Amborella trichopoda HOM05D004628 ORTHO05D005166 6.0e-11 73.9 207 33.3
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.0e-10 73.2 974 24.3
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 1.3e-10 72.8 109 41.3
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.3e-10 72.0 59 64.4
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.3e-10 72.0 76 52.6
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 6.6e-10 70.5 68 58.8
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.1e-09 69.7 104 48.1
MBI01_g10116_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 2.5e-09 68.6 209 32.5
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 4.3e-09 67.8 337 27.9
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 7.3e-09 67.0 168 38.1
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 9.5e-09 66.6 105 44.8
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 1.2e-08 66.2 201 32.3
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 1.2e-08 66.2 236 32.6
Dinv30429 Davidia involucrata HOM05D008208 ORTHO05D010143 2.1e-08 65.5 273 29.7
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 2.1e-08 65.5 331 29.3
Gorai.011G070600 Gossypium raimondii HOM05D008208 ORTHO05D010143 3.6e-08 64.7 217 32.3
MBI04_g07011_MAGBIO Magnolia biondii HOM05D008208 ORTHO05D010143 4.7e-08 64.3 209 31.1
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 1.4e-07 62.8 120 39.2
Gohir.D10G066500 Gossypium hirsutum HOM05D008208 ORTHO05D010143 2.3e-07 62.0 217 31.8
Zm00001eb217550 Zea mays HOM05D058439 ORTHO05D005166 3.1e-07 61.6 838 24.3
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 5.2e-07 60.8 227 29.5
BcaNung07335 Brassica carinata HOM05D004628 ORTHO05D005166 6.8e-07 60.5 69 52.2
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 8.9e-07 60.1 128 39.1
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 8.9e-07 60.1 78 42.3
TAR626G1368 Trochodendron aralioides HOM05D008208 ORTHO05D010143 1.2e-06 59.7 264 28.8
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 2.0e-06 58.9 108 38.0
PSO210G1301 Papaver somniferum HOM05D029104 ORTHO05D010143 2.0e-06 58.9 227 30.0
CAN.G1627.4 Capsicum annuum HOM05D004628 ORTHO05D005166 2.6e-06 58.5 38 68.4
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 3.4e-06 58.2 110 36.4
TAR639G0001 Trochodendron aralioides HOM05D008208 ORTHO05D010143 3.4e-06 58.2 293 28.0
CSS0036998 Camellia sinensis var. sinensis HOM05D008208 ORTHO05D010143 7.5e-06 57.0 238 29.0
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 7.5e-06 57.0 237 30.4


User provided reference genes

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