Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 6.4e-108 394.4 209 100.0
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 3.3e-64 249.2 207 67.6
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 8.2e-63 244.6 211 71.1
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 1.7e-60 236.9 211 68.7
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 8.3e-55 218.0 205 64.4
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.6e-53 213.8 216 57.4
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 3.5e-53 212.6 208 60.6
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 5.9e-53 211.8 212 59.9
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 3.8e-52 209.1 211 56.9
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.9e-51 206.8 214 57.5
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 3.3e-51 206.1 210 57.6
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 3.3e-51 206.1 210 56.7
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 4.2e-51 205.7 216 57.9
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 9.5e-51 204.5 216 56.9
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 9.5e-51 204.5 204 58.8
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 1.2e-50 204.1 210 59.5
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 2.1e-50 203.4 209 58.4
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 2.8e-50 203.0 214 57.0
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 3.6e-50 202.6 219 57.1
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 1.0e-49 201.1 210 56.2
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 1.0e-49 201.1 213 57.3
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.0e-49 201.1 213 55.9
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.8e-49 200.3 216 56.9
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 2.3e-49 199.9 219 55.7
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.3e-49 199.9 210 57.6
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 4.0e-49 199.1 210 55.2
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 5.2e-49 198.7 214 58.4
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 5.2e-49 198.7 209 53.6
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 1.5e-48 197.2 210 58.6
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 2.0e-48 196.8 215 55.3
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 3.4e-48 196.1 210 56.2
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 4.4e-48 195.7 203 59.1
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.4e-48 195.7 217 56.7
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 4.4e-48 195.7 243 51.4
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 5.7e-48 195.3 210 56.7
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 9.8e-48 194.5 209 56.0
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.7e-47 193.7 205 56.6
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 2.8e-47 193.0 209 56.0
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 8.3e-47 191.4 211 55.5
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.4e-46 190.7 214 55.1
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 3.1e-46 189.5 206 56.3
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 9.2e-46 188.0 210 55.2
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.2e-45 187.6 208 51.9
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.6e-45 187.2 218 48.6
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.7e-45 186.4 197 56.3
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 3.5e-45 186.0 213 53.1
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 4.5e-45 185.7 217 54.8
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 5.9e-45 185.3 209 52.6
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 7.8e-45 184.9 206 55.3
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.0e-44 184.5 207 54.1
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.0e-44 184.5 221 52.5
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 3.8e-44 182.6 210 53.3
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.8e-44 182.6 210 55.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 5.0e-44 182.2 218 53.2
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.6e-44 181.8 210 53.8
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 6.6e-44 181.8 209 52.2
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 8.6e-44 181.4 213 50.7
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.9e-43 180.3 213 50.2
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.3e-43 179.1 214 54.2
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 4.3e-43 179.1 210 53.3
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 7.3e-43 178.3 205 52.7
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 9.5e-43 177.9 180 56.1
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.6e-42 177.2 211 54.0
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.6e-42 177.2 214 50.9
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 3.6e-42 176.0 241 46.5
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 8.0e-42 174.9 214 50.5
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.0e-41 174.5 241 46.1
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.0e-41 174.5 219 51.1
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 1.4e-41 174.1 255 47.1
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 1.4e-41 174.1 246 46.7
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.3e-41 173.3 206 53.4
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 4.0e-41 172.6 258 43.0
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 5.2e-41 172.2 249 45.0
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 5.2e-41 172.2 200 53.0
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 6.8e-41 171.8 210 51.0
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 8.9e-41 171.4 241 45.6
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 3.4e-40 169.5 209 51.2
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 2.9e-39 166.4 170 58.2
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 4.9e-39 165.6 243 46.1
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 8.3e-39 164.9 209 49.8
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.8e-38 163.7 208 51.4
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 2.4e-38 163.3 203 50.2
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 2.4e-38 163.3 253 43.5
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 5.4e-38 162.2 211 51.7
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 7.0e-38 161.8 209 49.8
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 1.2e-37 161.0 209 49.3
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.0e-37 160.2 209 48.3
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 2.7e-37 159.8 210 49.5
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 3.5e-37 159.5 208 50.5
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 4.6e-37 159.1 203 50.7
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 6.0e-37 158.7 212 48.6
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 7.8e-37 158.3 313 41.2
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 7.8e-37 158.3 234 44.4
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.0e-36 157.9 217 47.0
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 1.0e-36 157.9 246 41.9
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.0e-36 157.9 211 49.8
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 3.0e-36 156.4 280 40.0
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 1.9e-35 153.7 193 53.4
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 3.3e-35 152.9 209 46.9
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 7.3e-35 151.8 210 46.2
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 6.2e-34 148.7 214 49.5
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.3e-33 146.7 254 40.9
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.3e-33 146.7 215 46.5
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 3.1e-33 146.4 146 58.9
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 4.0e-33 146.0 215 47.9
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 5.2e-33 145.6 216 45.8
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 1.2e-32 144.4 205 50.2
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 2.0e-32 143.7 156 57.7
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 3.4e-32 142.9 216 49.1
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 3.4e-32 142.9 216 49.1
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 4.4e-32 142.5 191 48.7
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 7.5e-32 141.7 152 58.6
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 7.0e-30 135.2 158 56.3
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 3.5e-29 132.9 213 46.0
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.5e-29 132.9 242 41.3
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 4.6e-29 132.5 180 48.3
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.7e-28 130.6 228 42.5
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 6.6e-28 128.6 206 42.2
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.1e-27 127.9 170 45.3
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.5e-27 126.7 158 48.7
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 9.5e-27 124.8 237 40.5
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 9.5e-27 124.8 237 40.5
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.1e-26 123.6 223 40.8
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 3.6e-26 122.9 198 43.9
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.8e-25 120.6 165 44.8
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 4.0e-25 119.4 231 39.0
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-24 117.5 194 45.4
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 1.5e-24 117.5 194 45.4
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 4.9e-23 112.5 151 48.3
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 8.3e-23 111.7 206 42.2
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 8.3e-23 111.7 161 44.1
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 3.2e-22 109.8 168 39.3
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 9.2e-22 108.2 163 47.9
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 2.1e-21 107.1 73 72.6
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 4.6e-21 105.9 185 42.7
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 6.0e-21 105.5 157 42.0
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 6.6e-20 102.1 184 43.5
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 4.3e-19 99.4 81 65.4
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 5.6e-19 99.0 170 44.7
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 9.5e-19 98.2 149 45.0
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 8.1e-18 95.1 103 55.3
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 5.2e-17 92.4 183 40.4
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 6.8e-17 92.0 139 42.4
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 2.6e-16 90.1 147 40.8
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 8.4e-15 85.1 58 74.1
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 63 68.3
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 63 68.3
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 63 68.3
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-14 84.7 63 68.3
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 7.1e-14 82.0 56 75.0
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 1.2e-13 81.3 196 36.2
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.2e-13 81.3 144 42.4
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-13 80.9 59 69.5
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-13 80.5 56 73.2
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.7e-13 80.1 135 42.2
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 3.5e-13 79.7 75 58.7
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 1.3e-12 77.8 196 35.7
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 2.5e-11 73.6 113 40.7
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 1.6e-10 70.9 54 66.7
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.6e-10 70.9 182 33.0
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.8e-09 67.4 51 70.6
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 2.4e-09 67.0 136 39.7
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-09 67.0 46 71.7
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 2.4e-09 67.0 46 71.7
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.2e-08 64.7 151 34.4
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 4.4e-08 62.8 51 68.6
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 9.9e-08 61.6 178 31.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 3.8e-07 59.7 76 47.4
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 9.3e-06 55.1 76 52.6
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 9.3e-06 55.1 87 44.8


User provided reference genes

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