Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.5e-294 1015.4 498 100.0
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 2.8e-195 685.6 493 72.2
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 4.4e-193 678.3 494 71.5
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 5.9e-190 667.9 490 69.6
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 5.0e-189 664.8 493 68.8
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 2.1e-187 659.4 494 69.6
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 8.0e-187 657.5 569 61.3
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 2.6e-185 652.5 485 67.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.6e-185 652.5 492 68.7
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 5.8e-185 651.4 489 66.1
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 6.4e-184 647.9 492 67.3
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.4e-183 646.7 487 67.4
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 9.2e-183 644.0 485 66.6
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 7.8e-182 641.0 484 67.6
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 1.3e-181 640.2 494 66.8
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 1.3e-181 640.2 498 67.1
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 1.5e-180 636.7 494 66.6
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 3.3e-180 635.6 494 66.6
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.2e-179 633.6 493 66.1
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.2e-179 633.6 478 66.3
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 3.6e-179 632.1 466 68.5
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 3.6e-179 632.1 485 68.2
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 3.6e-179 632.1 487 66.9
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.7e-179 631.7 466 68.7
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 6.2e-179 631.3 484 66.7
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 8.1e-179 630.9 486 67.3
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 8.1e-179 630.9 484 66.7
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.8e-178 629.8 484 66.7
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 4.0e-178 628.6 497 66.4
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 4.0e-178 628.6 485 67.0
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 5.2e-178 628.2 494 65.6
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.5e-177 626.7 487 66.1
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.4e-177 625.2 485 66.6
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 9.8e-177 624.0 495 65.7
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.7e-176 623.2 492 65.2
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 4.9e-176 621.7 497 65.8
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 1.1e-175 620.5 485 66.0
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.1e-175 620.5 468 67.3
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 1.1e-175 620.5 468 67.3
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 2.4e-175 619.4 484 65.7
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 2.4e-175 619.4 495 65.5
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.2e-175 619.0 485 65.6
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.2e-175 619.0 485 65.6
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.2e-175 619.0 488 65.2
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.1e-175 618.6 485 65.4
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 9.2e-175 617.5 488 65.6
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.6e-174 616.7 466 68.0
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 2.7e-174 615.9 462 68.2
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 2.7e-174 615.9 483 65.8
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 2.7e-174 615.9 461 67.9
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 3.5e-174 615.5 475 66.9
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.5e-174 615.5 488 65.4
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.0e-173 614.0 468 67.1
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.0e-173 614.0 484 64.5
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 1.0e-173 614.0 484 64.3
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.3e-173 613.6 485 64.9
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.3e-173 613.6 481 65.5
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.7e-173 613.2 483 65.6
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 1.7e-173 613.2 483 65.4
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.7e-173 613.2 483 65.6
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 3.0e-173 612.5 483 65.4
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 3.9e-173 612.1 483 65.4
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.9e-173 612.1 484 65.1
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 5.1e-173 611.7 461 67.9
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 6.6e-173 611.3 494 64.4
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 6.6e-173 611.3 494 64.6
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-172 610.5 476 65.8
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 2.5e-172 609.4 494 63.8
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 4.3e-172 608.6 473 66.6
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 4.3e-172 608.6 491 64.0
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 5.6e-172 608.2 489 63.4
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.2e-171 607.1 461 66.8
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 1.8e-170 603.2 492 64.2
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 6.8e-170 601.3 501 64.5
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.6e-169 599.4 493 63.7
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.4e-169 599.0 476 64.3
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 4.4e-169 598.6 470 66.6
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.8e-169 598.2 491 63.1
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 9.9e-169 597.4 498 62.4
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.3e-168 597.0 486 62.1
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 2.9e-168 595.9 498 62.0
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.7e-168 595.5 492 62.6
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 6.4e-168 594.7 492 63.4
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 1.4e-167 593.6 484 62.8
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 1.9e-167 593.2 472 65.5
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.9e-167 593.2 492 63.0
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.1e-167 592.0 496 61.5
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.1e-167 592.0 496 61.5
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 2.7e-166 589.3 490 62.7
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 6.0e-166 588.2 470 64.7
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.0e-165 587.4 490 62.2
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.3e-165 586.3 462 64.5
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 5.1e-165 585.1 498 61.2
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 6.6e-165 584.7 439 67.4
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 8.6e-165 584.3 466 64.8
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.9e-164 583.2 496 62.3
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 7.3e-164 581.3 478 61.1
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.6e-163 580.1 508 60.2
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 2.1e-163 579.7 496 62.3
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 4.7e-163 578.6 500 61.0
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.4e-162 577.0 495 60.2
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 1.8e-162 576.6 474 62.4
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 2.4e-162 576.2 495 60.2
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.5e-161 573.5 481 62.0
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 2.0e-161 573.2 467 63.6
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 3.4e-161 572.4 495 59.6
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 9.9e-161 570.9 481 61.5
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 1.7e-160 570.1 468 63.0
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.2e-160 569.7 491 60.9
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.9e-160 569.3 485 60.6
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.3e-157 560.5 459 61.7
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.9e-157 558.9 494 58.7
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.9e-156 556.6 479 60.8
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 8.1e-155 551.2 473 61.1
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 6.9e-154 548.1 501 57.9
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.6e-153 546.2 495 58.2
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.6e-150 537.0 452 61.5
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.1e-148 530.8 473 57.5
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.6e-147 526.9 484 55.8
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 1.7e-144 516.9 491 56.0
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 3.7e-139 499.2 432 60.0
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.4e-138 496.5 404 63.4
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.0e-136 491.1 417 61.6
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 6.0e-134 481.9 476 52.7
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 4.3e-132 475.7 450 56.4
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 9.0e-130 468.0 487 51.5
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.4e-127 460.7 469 51.8
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 3.5e-126 456.1 495 51.1
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 2.8e-123 446.4 481 49.9
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 4.8e-123 445.7 485 50.3
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.0e-121 440.3 390 58.7
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 2.0e-116 423.7 403 55.3
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 3.5e-105 386.3 435 49.9
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.5e-92 344.4 375 49.3
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.2e-91 340.5 373 51.2
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 2.2e-83 313.9 253 64.0
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.0e-77 295.0 298 52.3
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.2e-76 291.6 168 84.5
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.1e-74 285.0 163 84.0
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 1.3e-72 278.1 511 36.0
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 9.5e-71 271.9 157 80.9
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 7.3e-63 245.7 138 84.8
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 4.0e-53 213.4 145 75.2
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 9.6e-39 165.6 150 56.7
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 9.6e-39 165.6 99 80.8
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 6.2e-38 162.9 131 64.9
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 1.5e-36 158.3 149 57.7
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.6e-22 111.7 61 90.2
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 3.2e-10 70.9 56 60.7


User provided reference genes

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