Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 7.0e-77 290.4 135 100.0
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 1.2e-44 183.3 147 59.9
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 8.6e-43 177.2 150 62.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 3.3e-42 175.3 97 77.3
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 3.3e-42 175.3 97 77.3
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 5.6e-42 174.5 145 59.3
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 1.6e-41 172.9 135 63.0
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 1.6e-41 172.9 97 76.3
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 2.1e-41 172.6 97 77.3
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 2.1e-41 172.6 125 66.4
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 3.6e-41 171.8 130 63.8
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 3.6e-41 171.8 95 76.8
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 4.7e-41 171.4 106 71.7
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.4e-40 169.9 106 71.7
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.4e-40 169.9 145 57.2
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.8e-40 169.5 114 71.9
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.8e-40 169.5 114 71.9
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.8e-40 169.5 94 80.9
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.3e-40 169.1 132 61.4
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 3.1e-40 168.7 93 79.6
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 3.1e-40 168.7 81 87.7
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.1e-40 168.7 106 70.8
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 3.1e-40 168.7 106 70.8
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 5.2e-40 167.9 112 68.8
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 5.2e-40 167.9 114 67.5
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 5.2e-40 167.9 83 84.3
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 5.2e-40 167.9 128 61.7
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 8.9e-40 167.2 97 72.2
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.2e-39 166.8 101 70.3
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 1.5e-39 166.4 102 73.5
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 1.5e-39 166.4 92 77.2
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 2.0e-39 166.0 131 60.3
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 2.0e-39 166.0 94 76.6
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 2.6e-39 165.6 101 72.3
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 3.4e-39 165.2 101 73.3
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 5.8e-39 164.5 80 86.2
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 7.6e-39 164.1 87 80.5
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 7.6e-39 164.1 94 73.4
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.3e-38 163.3 132 61.4
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.3e-38 163.3 96 75.0
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 2.2e-38 162.5 94 77.7
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 2.2e-38 162.5 117 63.2
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 3.8e-38 161.8 135 60.0
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 6.4e-38 161.0 120 64.2
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 6.4e-38 161.0 136 59.6
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 1.1e-37 160.2 130 59.2
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.1e-37 160.2 97 74.2
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.1e-37 160.2 97 74.2
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.1e-37 160.2 97 74.2
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 1.1e-37 160.2 96 72.9
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.4e-37 159.8 109 67.9
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.4e-37 159.8 80 82.5
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.9e-37 159.5 129 59.7
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 1.9e-37 159.5 98 70.4
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.9e-37 159.5 98 73.5
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 2.4e-37 159.1 97 73.2
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.4e-37 159.1 81 82.7
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 3.2e-37 158.7 81 84.0
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 3.2e-37 158.7 80 80.0
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 4.1e-37 158.3 97 70.1
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 7.1e-37 157.5 99 72.7
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 1.2e-36 156.8 90 75.6
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 2.1e-36 156.0 109 64.2
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 3.5e-36 155.2 81 79.0
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 3.5e-36 155.2 97 72.2
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 7.8e-36 154.1 121 61.2
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 1.0e-35 153.7 121 61.2
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 2.3e-35 152.5 120 60.8
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 3.0e-35 152.1 127 58.3
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 6.6e-35 151.0 81 79.0
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 8.6e-35 150.6 110 63.6
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 1.1e-34 150.2 116 63.8
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.9e-34 149.4 86 74.4
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 4.3e-34 148.3 102 63.7
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 5.6e-34 147.9 103 66.0
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 3.6e-33 145.2 112 57.1
SEGI_34374 Sequoiadendron giganteum HOM05D007646 ORTHO05D004022 1.8e-32 142.9 97 63.9
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 5.2e-32 141.4 87 69.0
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 5.2e-32 141.4 150 50.0
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 1.5e-31 139.8 149 50.3
Mapoly0026s0130 Marchantia polymorpha HOM05D007646 ORTHO05D004022 1.7e-30 136.3 81 69.1
Sabra17G0101300 Salix brachista HOM05D007646 ORTHO05D004022 2.4e-29 132.5 183 42.1
Sabra17G0103900 Salix brachista HOM05D007646 ORTHO05D004022 3.2e-29 132.1 184 41.8
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 2.7e-28 129.0 81 64.2
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 1.7e-27 126.3 83 60.2
Medtr7g082970 Medicago truncatula HOM05D007646 ORTHO05D004022 7.3e-26 120.9 171 40.4
Ah.16g101400 Amaranthus hybridus HOM05D007646 ORTHO05D004022 1.2e-23 113.6 57 80.7
CsaV3_3G017630 Cucumis sativus L. HOM05D007646 ORTHO05D004022 9.9e-23 110.5 51 88.2
Nn4g24089 Nelumbo nucifera HOM05D007646 ORTHO05D004022 1.4e-21 106.7 91 57.1
Peaxi162Scf00343g00059 Petunia axillaris HOM05D007646 ORTHO05D004022 2.4e-21 105.9 51 86.3
CSS0015077 Camellia sinensis var. sinensis HOM05D007646 ORTHO05D004022 3.2e-21 105.5 51 86.3
MBI10_g07293_MAGBIO Magnolia biondii HOM05D007646 ORTHO05D004022 9.3e-21 104.0 52 82.7
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 7.1e-13 77.8 79 43.0
unitig_748.g8495 Utricularia gibba HOM05D007646 ORTHO05D004022 3.5e-12 75.5 44 72.7
ECA246G1632 Erigeron canadensis HOM05D007646 ORTHO05D004022 7.9e-12 74.3 34 82.4
Nn3g18065 Nelumbo nucifera HOM05D007646 ORTHO05D004022 1.3e-11 73.6 83 47.0
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 3.9e-11 72.0 79 43.0
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.9e-10 69.7 87 39.1
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.5e-10 69.3 82 40.2
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 3.3e-10 68.9 80 38.8
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 3.3e-10 68.9 79 40.5
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 4.3e-10 68.6 80 38.8
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 9.6e-10 67.4 79 38.0
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.3e-09 67.0 80 38.8
MELO3C020311.2 Cucumis melo HOM05D007646 ORTHO05D004022 1.3e-09 67.0 43 72.1
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 1.3e-09 67.0 77 40.3
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.6e-09 66.6 80 37.5
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.6e-09 66.6 77 39.0
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 2.1e-09 66.2 80 37.5
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 2.8e-09 65.9 80 37.5
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 2.8e-09 65.9 95 35.8
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 2.8e-09 65.9 79 36.7
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.7e-09 65.5 79 36.7
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 3.7e-09 65.5 80 37.5
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 4.8e-09 65.1 87 36.8
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.8e-09 65.1 79 36.7
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 6.2e-09 64.7 93 32.3
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 6.2e-09 64.7 86 38.4
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 6.2e-09 64.7 87 36.8
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 8.2e-09 64.3 79 35.4
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 8.2e-09 64.3 80 37.5
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 39.2
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 1.1e-08 63.9 79 36.7
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 1.4e-08 63.5 109 31.2
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.8e-08 63.2 79 38.0
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 1.8e-08 63.2 79 38.0
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.8e-08 63.2 79 35.4
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 2.4e-08 62.8 80 38.8
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.4e-08 62.8 79 36.7
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 2.4e-08 62.8 79 36.7
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 3.1e-08 62.4 79 35.4
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 3.1e-08 62.4 79 36.7
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 4.0e-08 62.0 79 35.4
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 4.0e-08 62.0 77 39.0
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 4.0e-08 62.0 80 38.8
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 4.0e-08 62.0 79 35.4
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 5.3e-08 61.6 79 36.7
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 5.3e-08 61.6 79 35.4
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 5.3e-08 61.6 80 36.2
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 5.3e-08 61.6 79 34.2
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 6.9e-08 61.2 86 36.0
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 6.9e-08 61.2 80 35.0
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 6.9e-08 61.2 90 32.2
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 9.0e-08 60.8 80 36.2
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 1.2e-07 60.5 79 34.2
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.2e-07 60.5 79 34.2
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 1.5e-07 60.1 79 35.4
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 2.0e-07 59.7 79 34.2
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 2.0e-07 59.7 81 35.8
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 2.0e-07 59.7 79 38.0
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 2.0e-07 59.7 90 33.3
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-07 59.7 90 33.3
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-07 59.7 90 33.3
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.6e-07 59.3 79 34.2
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.4e-07 58.9 79 34.2
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 3.4e-07 58.9 77 35.1
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 3.4e-07 58.9 80 33.8
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 4.5e-07 58.5 80 35.0
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 4.5e-07 58.5 79 34.2
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 5.8e-07 58.2 79 32.9
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 7.6e-07 57.8 79 34.2
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 7.6e-07 57.8 81 34.6
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 7.6e-07 57.8 79 34.2
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 1.0e-06 57.4 90 36.7
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 1.7e-06 56.6 79 34.2
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 1.7e-06 56.6 84 35.7
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 1.7e-06 56.6 79 32.9
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.2e-06 56.2 79 32.9
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 2.9e-06 55.8 88 30.7


User provided reference genes

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