Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 5.4e-124 447.6 213 100.0
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 1.8e-111 406.0 208 91.3
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 5.8e-110 401.0 213 88.3
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.3e-109 399.8 213 88.3
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 3.8e-109 398.3 208 89.4
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.2e-108 395.2 213 86.9
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 8.7e-106 387.1 213 83.6
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.5e-105 386.3 213 83.6
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 5.6e-105 384.4 211 83.4
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 2.1e-104 382.5 208 84.1
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 2.1e-104 382.5 213 84.5
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 6.2e-104 380.9 208 84.6
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 6.2e-104 380.9 213 82.2
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.1e-103 380.2 213 81.2
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.4e-103 379.8 213 85.0
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.8e-103 379.4 212 82.1
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.4e-103 379.0 208 83.7
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 4.0e-103 378.3 213 83.6
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 4.0e-103 378.3 208 82.7
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 1.2e-102 376.7 208 83.7
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.2e-102 376.7 213 80.8
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.5e-102 376.3 213 83.1
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 2.0e-102 375.9 213 81.7
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 2.0e-102 375.9 208 83.7
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 4.4e-102 374.8 213 80.8
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 5.8e-102 374.4 211 82.0
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 7.6e-102 374.0 213 82.2
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 7.6e-102 374.0 207 83.1
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 9.9e-102 373.6 208 81.7
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 1.3e-101 373.2 213 82.2
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.3e-101 373.2 208 83.2
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 1.7e-101 372.9 208 80.8
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 2.2e-101 372.5 208 82.2
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 2.9e-101 372.1 208 83.2
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 3.8e-101 371.7 213 81.7
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 4.9e-101 371.3 208 82.2
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 6.4e-101 370.9 213 81.2
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 6.4e-101 370.9 201 84.6
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 8.4e-101 370.5 208 82.7
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 8.4e-101 370.5 208 82.7
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 8.4e-101 370.5 208 82.7
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 1.1e-100 370.2 213 81.2
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.4e-100 369.8 198 85.9
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 2.4e-100 369.0 208 80.3
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 4.2e-100 368.2 206 82.5
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 81.2
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 5.4e-100 367.9 213 80.8
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.2e-99 366.7 211 80.1
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.6e-99 366.3 208 78.8
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.6e-99 366.3 203 82.3
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.1e-99 365.9 213 78.9
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 2.7e-99 365.5 213 80.8
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.7e-99 365.5 208 81.2
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.5e-99 365.2 213 79.3
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 4.6e-99 364.8 213 80.8
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 6.0e-99 364.4 208 81.2
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 1.0e-98 363.6 207 80.7
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.0e-98 363.6 213 77.9
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.3e-98 363.2 208 77.9
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 1.7e-98 362.8 211 78.7
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 1.7e-98 362.8 208 79.3
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 2.3e-98 362.5 193 85.0
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 3.0e-98 362.1 234 73.9
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 3.0e-98 362.1 213 80.3
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 3.9e-98 361.7 209 78.9
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 5.1e-98 361.3 213 79.3
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 5.1e-98 361.3 208 81.2
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 5.1e-98 361.3 209 79.4
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 8.7e-98 360.5 203 81.3
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 8.7e-98 360.5 208 80.3
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 8.7e-98 360.5 208 79.3
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 1.1e-97 360.1 206 79.6
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.1e-97 360.1 208 80.3
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 1.1e-97 360.1 218 79.8
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 1.5e-97 359.8 211 79.1
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.9e-97 359.4 206 78.6
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 2.5e-97 359.0 204 80.4
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 2.5e-97 359.0 204 80.4
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.5e-97 359.0 203 80.8
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 2.5e-97 359.0 209 78.9
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 2.5e-97 359.0 206 78.6
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.3e-97 358.6 203 80.3
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 3.3e-97 358.6 208 79.8
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 4.3e-97 358.2 206 77.2
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 5.6e-97 357.8 206 78.6
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 7.3e-97 357.5 207 79.2
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 9.6e-97 357.1 204 79.9
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 9.6e-97 357.1 204 79.9
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 9.6e-97 357.1 208 77.9
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 1.6e-96 356.3 206 78.2
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 1.6e-96 356.3 208 78.4
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.8e-96 355.5 203 79.8
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 4.8e-96 354.8 208 76.9
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 4.8e-96 354.8 206 78.2
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 8.1e-96 354.0 207 78.7
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 1.8e-95 352.8 206 77.7
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 4.0e-95 351.7 204 79.9
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 5.3e-95 351.3 206 77.2
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 5.3e-95 351.3 207 77.8
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.2e-94 350.1 233 71.2
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.5e-94 349.7 211 75.4
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 3.4e-94 348.6 207 77.8
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 1.7e-93 346.3 294 60.5
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 2.2e-93 345.9 207 77.3
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 2.2e-93 345.9 206 77.2
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 2.9e-93 345.5 211 76.3
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 2.3e-90 335.9 253 67.6
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.0e-90 335.5 200 77.0
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 5.1e-90 334.7 206 74.8
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 8.7e-90 334.0 199 74.4
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 4.3e-89 331.6 209 72.7
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 1.3e-88 330.1 209 72.7
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 2.8e-88 328.9 207 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.1e-87 327.0 201 72.6
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 9.0e-87 323.9 166 88.0
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 1.5e-86 323.2 212 71.7
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 4.5e-86 321.6 178 86.0
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.9e-85 318.2 204 73.0
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 7.4e-81 304.3 169 83.4
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 1.3e-72 276.9 427 40.7
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 5.3e-71 271.6 145 84.1
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 2.0e-70 269.6 145 82.8
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.8e-69 265.4 178 71.9
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 2.5e-68 262.7 145 80.0
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 7.2e-68 261.2 208 62.5
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 8.2e-56 221.1 113 86.7
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 7.0e-55 218.0 140 71.4
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 2.8e-48 196.1 125 73.6
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 2.8e-48 196.1 197 49.7
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.1e-47 194.1 189 49.2
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.1e-47 192.6 109 83.5
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 2.2e-40 169.9 195 43.1
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 6.3e-40 168.3 88 84.1
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 1.3e-37 160.6 163 53.4
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.4e-34 150.6 96 74.0
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 3.0e-34 149.4 74 86.5
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 6.8e-34 148.3 79 87.3
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 3.7e-32 142.5 95 71.6
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 4.1e-23 112.5 69 79.7
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 2.5e-20 103.2 75 66.7
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.6e-19 100.5 72 68.1
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 2.0e-17 93.6 66 69.7
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 6.4e-16 88.6 57 75.4
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 5.2e-10 68.9 40 80.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 1.2e-09 67.8 35 82.9
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 5.8e-09 65.5 32 90.6
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 7.5e-09 65.1 35 74.3
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 1.7e-08 63.9 60 61.7


User provided reference genes

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