Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 7.9e-149 530.4 267 100.0
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 4.8e-130 468.0 261 90.4
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.8e-124 449.5 261 87.7
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.3e-124 449.1 260 86.9
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 1.5e-123 446.4 261 86.2
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.6e-123 445.7 261 85.4
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 6.3e-122 441.0 260 86.2
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.8e-121 439.5 260 85.8
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 2.4e-121 439.1 260 85.8
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 5.4e-121 438.0 261 84.7
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 7.0e-121 437.6 260 85.8
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 9.1e-121 437.2 261 83.9
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 3.5e-120 435.3 260 85.8
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 4.5e-120 434.9 261 84.3
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 7.7e-120 434.1 261 82.8
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 7.7e-120 434.1 268 82.8
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.9e-119 432.2 259 85.3
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 3.8e-119 431.8 260 85.4
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 5.0e-119 431.4 262 83.6
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.5e-118 429.9 261 82.8
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.9e-118 429.5 261 83.1
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 4.2e-118 428.3 261 82.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 5.5e-118 427.9 261 83.9
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.2e-117 426.8 260 83.5
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 1.2e-117 426.8 261 82.8
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.7e-117 424.9 261 80.8
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 4.7e-117 424.9 259 83.0
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 8.0e-117 424.1 261 82.4
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 1.0e-116 423.7 261 80.8
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 1.4e-116 423.3 261 82.4
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 2.3e-116 422.5 261 82.4
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.0e-116 421.8 261 80.5
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 6.8e-116 421.0 261 82.4
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.5e-115 419.9 261 80.8
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 2.0e-115 419.5 261 81.6
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.6e-115 419.1 259 82.6
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.4e-115 418.7 263 82.5
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 7.5e-115 417.5 260 82.7
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 7.5e-115 417.5 269 79.2
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 9.8e-115 417.2 267 80.1
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 9.8e-115 417.2 260 82.7
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 9.8e-115 417.2 261 80.8
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.7e-114 416.4 261 81.2
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.7e-114 416.4 268 81.0
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.2e-114 416.0 261 80.5
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 2.9e-114 415.6 268 80.2
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 2.9e-114 415.6 262 80.5
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 3.7e-114 415.2 261 82.4
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.3e-114 414.5 268 79.5
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.3e-114 414.5 268 79.9
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 8.3e-114 414.1 261 81.2
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.1e-113 413.7 260 81.5
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 2.4e-113 412.5 266 78.9
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 3.2e-113 412.1 260 80.8
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 3.2e-113 412.1 268 79.1
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 5.4e-113 411.4 266 78.9
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 7.0e-113 411.0 265 79.2
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.2e-112 410.2 260 80.4
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 1.6e-112 409.8 261 81.2
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 2.0e-112 409.5 260 80.4
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 2.7e-112 409.1 261 79.7
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 4.6e-112 408.3 262 78.6
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 7.8e-112 407.5 268 78.7
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 1.3e-111 406.8 259 78.8
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 2.9e-111 405.6 261 80.1
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.9e-111 405.2 261 77.8
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 5.0e-111 404.8 260 79.2
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.1e-110 403.7 262 79.0
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.1e-110 403.7 265 78.9
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.1e-110 403.7 261 79.3
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 2.5e-110 402.5 269 79.2
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 2.5e-110 402.5 261 78.9
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 3.3e-110 402.1 263 76.4
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 4.3e-110 401.7 261 80.1
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.2e-109 400.2 292 74.3
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 1.2e-109 400.2 261 80.5
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.6e-109 398.7 260 76.2
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 4.7e-109 398.3 261 77.4
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 6.2e-109 397.9 261 77.4
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 6.2e-109 397.9 261 78.2
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 8.0e-109 397.5 259 80.3
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 3.1e-108 395.6 261 76.6
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 4.0e-108 395.2 268 76.5
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 8.9e-108 394.0 268 76.5
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 7.5e-107 391.0 261 77.4
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 7.5e-107 391.0 261 76.6
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.3e-106 390.2 261 77.4
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.3e-106 390.2 299 69.9
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 1.7e-106 389.8 293 71.7
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 2.2e-106 389.4 261 77.0
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 6.4e-106 387.9 260 76.9
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 6.4e-106 387.9 260 76.9
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 2.4e-105 386.0 260 75.0
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 4.1e-105 385.2 261 77.0
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 9.2e-105 384.0 264 76.1
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 7.8e-104 380.9 259 75.7
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 1.0e-103 380.6 260 75.0
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 8.6e-103 377.5 261 75.5
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 3.3e-102 375.6 232 80.6
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 2.1e-101 372.9 261 74.7
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 1.4e-100 370.2 260 74.6
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 3.1e-100 369.0 260 73.8
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 4.0e-100 368.6 253 77.1
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 8.9e-100 367.5 268 72.4
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 5.8e-99 364.8 244 76.6
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 7.5e-99 364.4 275 69.5
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 9.8e-99 364.0 262 72.1
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 2.2e-98 362.8 262 71.4
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 2.2e-98 362.8 314 63.7
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 1.1e-97 360.5 198 91.9
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.9e-97 359.8 262 69.5
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 1.9e-97 359.8 262 69.5
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.3e-95 353.6 260 70.8
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 3.9e-95 352.1 260 71.2
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 8.6e-95 350.9 262 67.9
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-94 350.5 236 76.3
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 2.5e-94 349.4 266 71.4
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.3e-94 348.6 265 69.1
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 5.6e-94 348.2 260 70.0
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 5.6e-94 348.2 262 69.8
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.6e-93 346.7 262 69.5
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 6.2e-93 344.7 264 68.9
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.4e-92 343.6 261 69.7
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.4e-92 343.6 268 69.8
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 3.1e-92 342.4 270 68.1
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 3.1e-92 342.4 269 68.8
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 4.0e-92 342.0 262 67.2
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 1.2e-91 340.5 261 67.8
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.0e-91 339.7 260 70.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.1e-89 334.0 260 68.5
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.1e-89 334.0 260 68.5
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.4e-89 333.6 270 67.0
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.4e-89 332.8 207 81.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 3.2e-89 332.4 268 66.4
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 4.1e-89 332.0 260 67.3
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 5.4e-89 331.6 263 68.1
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 5.4e-89 331.6 223 78.5
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 7.1e-89 331.3 260 67.7
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 7.1e-89 331.3 270 67.0
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.6e-88 330.1 261 67.4
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.0e-87 327.4 260 69.6
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 8.6e-87 324.3 271 63.8
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.5e-83 313.5 268 62.7
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 3.2e-81 305.8 260 62.7
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 4.6e-80 302.0 270 60.7
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 2.5e-78 296.2 270 60.4
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.5e-78 296.2 250 65.2
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 7.3e-78 294.7 270 60.0
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 6.2e-77 291.6 269 58.7
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 1.8e-76 290.0 197 75.6
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.6e-71 271.6 144 91.7
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.3e-62 242.3 175 72.0
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 1.0e-42 177.9 198 53.5
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 1.6e-40 170.6 194 47.4
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.0e-39 167.9 231 44.2
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 1.4e-39 167.5 148 58.8
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 1.9e-33 147.1 116 65.5
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 3.2e-33 146.4 117 66.7
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.7e-30 134.8 74 93.2
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.3e-29 134.4 93 72.0
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-28 131.0 147 51.0
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.9e-25 120.6 76 78.9
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 7.7e-19 98.6 150 40.0
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 1.3e-18 97.8 187 36.9
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.6e-16 90.9 54 77.8
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 2.4e-12 77.0 40 87.5
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 4.1e-12 76.3 40 80.0
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.2e-11 74.7 125 42.4
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 4.5e-11 72.8 40 80.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 1.0e-10 71.6 43 72.1
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 3.6e-08 63.2 138 34.1
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.0e-07 61.6 86 34.9
Sabra18G0026300 Salix brachista HOM05D002732 ORTHO05D002955 3.4e-06 56.6 32 90.6


User provided reference genes

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