Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.0e-95 352.4 184 100.0
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 2.7e-95 352.1 183 100.0
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 7.8e-95 350.5 183 99.5
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-94 349.4 184 98.9
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.0e-91 340.1 200 91.5
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.0e-91 340.1 200 91.5
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 8.3e-89 330.5 200 89.0
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 1.4e-72 276.6 203 78.3
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 5.1e-70 268.1 203 75.9
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-69 265.8 137 100.0
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.3e-69 265.4 204 76.0
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.1e-64 250.4 193 72.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 1.4e-64 250.0 204 70.6
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.7e-63 245.7 202 68.8
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 3.5e-63 245.4 199 70.9
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 6.0e-63 244.6 249 62.2
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 8.7e-62 240.7 197 68.0
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.5e-61 240.0 197 67.5
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.6e-61 238.0 202 68.8
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.6e-60 236.5 202 68.3
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 6.2e-60 234.6 202 67.3
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.1e-59 232.3 195 67.7
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 5.3e-59 231.5 197 68.5
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 6.9e-59 231.1 204 67.2
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 6.9e-59 231.1 201 68.7
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 9.0e-59 230.7 177 73.4
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 9.0e-59 230.7 177 73.4
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 9.0e-59 230.7 205 67.3
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.5e-58 229.9 202 66.8
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.5e-58 229.9 209 65.1
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 2.0e-58 229.6 203 67.5
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 5.8e-58 228.0 205 64.9
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 9.9e-58 227.3 203 67.0
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 9.9e-58 227.3 162 78.4
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.7e-57 226.5 199 67.3
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 1.7e-57 226.5 201 64.2
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 2.2e-57 226.1 206 64.6
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 2.2e-57 226.1 139 85.6
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 2.9e-57 225.7 203 63.1
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 3.8e-57 225.3 200 67.0
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 6.4e-57 224.6 202 65.3
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.1e-56 223.8 203 67.0
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.1e-56 223.8 203 67.0
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.1e-56 223.8 196 67.9
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.1e-56 223.8 202 66.3
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.4e-56 223.4 185 68.1
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.4e-56 223.4 200 65.5
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.9e-56 223.0 206 64.1
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.9e-56 223.0 206 64.1
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 2.4e-56 222.6 202 66.3
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.2e-56 221.9 199 66.3
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 4.2e-56 221.9 139 82.7
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 4.2e-56 221.9 203 66.5
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 4.2e-56 221.9 204 64.2
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 4.2e-56 221.9 139 83.5
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.7e-55 219.2 202 65.3
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 2.7e-55 219.2 209 63.2
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.5e-55 218.8 205 64.4
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 3.5e-55 218.8 139 84.9
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-55 218.8 151 80.8
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 4.6e-55 218.4 142 82.4
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 4.6e-55 218.4 203 63.5
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 7.9e-55 217.6 208 64.4
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 7.9e-55 217.6 162 72.2
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.0e-54 217.2 203 62.6
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.0e-54 217.2 139 82.7
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 1.3e-54 216.9 221 62.0
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.3e-54 216.9 138 81.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 2.3e-54 216.1 138 83.3
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 3.0e-54 215.7 140 81.4
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 3.0e-54 215.7 235 55.7
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 3.0e-54 215.7 197 64.0
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 3.0e-54 215.7 139 82.7
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 5.1e-54 214.9 140 80.7
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 8.7e-54 214.2 204 65.7
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 8.7e-54 214.2 197 63.5
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.1e-53 213.8 203 64.0
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.5e-53 213.4 205 62.9
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.9e-53 213.0 139 79.9
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 2.5e-53 212.6 204 63.2
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 2.5e-53 212.6 157 72.6
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 2.5e-53 212.6 136 78.7
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 3.3e-53 212.2 204 61.3
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 3.3e-53 212.2 200 64.0
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 3.3e-53 212.2 199 64.3
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 7.3e-53 211.1 162 69.8
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 9.6e-53 210.7 200 62.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 9.6e-53 210.7 206 60.7
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 9.6e-53 210.7 166 68.7
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 9.6e-53 210.7 146 77.4
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.3e-52 210.3 139 79.1
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.3e-52 210.3 153 73.2
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.3e-52 210.3 136 77.9
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.6e-52 209.9 211 58.8
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 2.1e-52 209.5 138 77.5
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.1e-52 209.5 181 65.2
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 6.2e-52 208.0 163 69.9
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 6.2e-52 208.0 122 87.7
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.1e-51 207.2 203 62.1
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 3.1e-51 205.7 203 60.1
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 4.0e-51 205.3 139 79.9
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 5.3e-51 204.9 184 63.0
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 5.3e-51 204.9 139 79.9
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 9.0e-51 204.1 139 75.5
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 9.0e-51 204.1 206 59.2
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.5e-50 203.4 142 77.5
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.5e-50 203.4 142 77.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.5e-50 203.4 139 76.3
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.5e-50 203.4 211 58.8
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.5e-50 203.4 138 76.8
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 2.6e-50 202.6 173 64.2
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 2.6e-50 202.6 210 58.1
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 4.5e-50 201.8 168 65.5
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 7.6e-50 201.1 185 63.2
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 9.9e-50 200.7 139 74.1
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 9.9e-50 200.7 139 74.8
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.7e-49 199.9 139 74.1
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.7e-49 199.9 139 77.0
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.2e-49 199.5 139 73.4
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 2.2e-49 199.5 182 62.1
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 3.8e-49 198.7 139 72.7
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.1e-48 197.2 139 74.8
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 3.2e-48 195.7 141 74.5
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 7.1e-48 194.5 205 56.6
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 7.1e-48 194.5 98 99.0
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 9.3e-48 194.1 151 71.5
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.2e-47 193.7 137 75.2
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 3.5e-47 192.2 185 62.2
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 3.5e-47 192.2 151 68.2
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 7.9e-47 191.0 122 81.1
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 3.9e-46 188.7 197 58.4
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 6.7e-46 188.0 160 66.9
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.1e-45 187.2 139 70.5
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.5e-45 186.8 175 61.7
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 4.3e-45 185.3 160 65.0
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.4e-43 180.3 176 62.5
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.8e-43 179.9 139 69.8
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.5e-42 176.8 179 57.5
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.1e-40 170.6 140 61.4
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-39 166.8 140 69.3
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 3.9e-38 162.2 173 57.2
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 7.4e-37 157.9 137 65.0
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 1.6e-36 156.8 157 59.9
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 2.8e-36 156.0 96 83.3
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.8e-36 156.0 155 62.6
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 6.2e-36 154.8 227 48.5
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 8.2e-36 154.5 106 75.5
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 4.1e-35 152.1 140 59.3
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 1.0e-33 147.5 90 84.4
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 5.0e-33 145.2 93 80.6
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.1e-27 127.5 82 81.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 5.0e-25 118.6 116 61.2
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 8.5e-25 117.9 151 54.3
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.5e-21 106.3 103 53.4
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.4e-19 99.8 137 50.4
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 6.9e-19 98.2 63 81.0
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 2.2e-17 93.2 138 39.9
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.6e-15 87.0 154 35.1
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 7.0e-11 71.6 76 55.3
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 7.0e-11 71.6 170 29.4
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.8e-09 65.9 68 58.8
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 6.1e-07 58.5 99 46.5
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 1.4e-06 57.4 38 78.9


User provided reference genes

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