Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 6.2e-45 185.3 265 100.0
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.1e-12 78.2 69 76.8
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.4e-12 77.8 69 73.9
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 9.1e-12 75.1 51 66.7
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.2e-11 74.7 50 70.0
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 4.5e-11 72.8 51 68.6
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.9e-11 72.4 51 64.7
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.9e-11 72.4 51 64.7
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 5.9e-11 72.4 51 64.7
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 5.9e-11 72.4 50 70.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 7.7e-11 72.0 50 70.0
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.0e-10 71.6 51 64.7
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.0e-10 71.6 51 64.7
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.7e-10 70.9 51 64.7
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.7e-10 70.9 51 64.7
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.7e-10 70.9 51 64.7
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.7e-10 70.9 51 64.7
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 2.2e-10 70.5 51 66.7
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.9e-10 70.1 51 64.7
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 2.9e-10 70.1 51 62.7
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 2.9e-10 70.1 51 64.7
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 2.9e-10 70.1 51 64.7
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.8e-10 69.7 51 62.7
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 3.8e-10 69.7 50 64.0
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.8e-10 69.7 46 67.4
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.8e-10 69.7 51 64.7
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 3.8e-10 69.7 51 68.6
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 3.8e-10 69.7 69 69.6
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 5.0e-10 69.3 69 72.5
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 5.0e-10 69.3 46 69.6
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.0e-10 69.3 51 62.7
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 60.8
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 60.8
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 62.7
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 62.7
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 62.7
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 60.8
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 60.8
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 60.8
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 60.8
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 62.7
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 6.5e-10 68.9 51 60.8
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 6.5e-10 68.9 51 60.8
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 8.5e-10 68.6 51 62.7
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 8.5e-10 68.6 46 69.6
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 8.5e-10 68.6 53 62.3
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 8.5e-10 68.6 51 64.7
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 1.1e-09 68.2 51 58.8
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 1.4e-09 67.8 50 64.0
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.4e-09 67.8 51 58.8
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 1.4e-09 67.8 52 63.5
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.4e-09 67.8 46 67.4
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 1.9e-09 67.4 52 63.5
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 2.5e-09 67.0 51 66.7
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.5e-09 67.0 51 60.8
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.5e-09 67.0 50 64.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 2.5e-09 67.0 51 60.8
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 3.2e-09 66.6 50 62.0
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 3.2e-09 66.6 50 64.0
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 4.2e-09 66.2 52 63.5
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 4.2e-09 66.2 51 60.8
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 5.5e-09 65.9 52 63.5
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 7.2e-09 65.5 71 67.6
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 7.2e-09 65.5 71 67.6
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 7.2e-09 65.5 51 60.8
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 7.2e-09 65.5 51 60.8
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 7.2e-09 65.5 51 62.7
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 7.2e-09 65.5 50 64.0
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 9.4e-09 65.1 71 59.2
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 9.4e-09 65.1 51 60.8
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.2e-08 64.7 49 65.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.2e-08 64.7 49 65.3
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.2e-08 64.7 50 62.0
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 1.2e-08 64.7 53 62.3
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 1.6e-08 64.3 51 60.8
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.6e-08 64.3 51 58.8
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.6e-08 64.3 54 61.1
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.6e-08 64.3 54 61.1
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.1e-08 63.9 51 62.7
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 2.7e-08 63.5 51 54.9
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 4.7e-08 62.8 51 56.9
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 7.9e-08 62.0 52 61.5
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.0e-07 61.6 51 54.9
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 1.0e-07 61.6 47 57.4
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.4e-07 61.2 44 61.4
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.4e-07 61.2 53 56.6
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.4e-07 61.2 53 60.4
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.4e-07 61.2 53 56.6
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.4e-07 61.2 53 56.6
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.4e-07 61.2 53 56.6
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.4e-07 61.2 56 53.6
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.8e-07 60.8 50 58.0
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.8e-07 60.8 51 58.8
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.8e-07 60.8 56 53.6
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.3e-07 60.5 52 57.7
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 3.0e-07 60.1 51 52.9
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 3.0e-07 60.1 51 52.9
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 3.0e-07 60.1 51 52.9
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 3.0e-07 60.1 66 69.7
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.1e-06 58.2 48 58.3
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.5e-06 57.8 50 54.0
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 2.0e-06 57.4 57 54.4
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.6e-06 57.0 49 59.2
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 2.6e-06 57.0 49 59.2
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 3.3e-06 56.6 47 61.7
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.4e-06 56.2 60 55.0
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 4.4e-06 56.2 46 58.7
CARHR068960 Cardamine hirsuta HOM05D004463 ORTHO05D004724 5.7e-06 55.8 25 88.0
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 7.4e-06 55.5 52 51.9
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 9.7e-06 55.1 58 50.0


User provided reference genes

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