Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 0.0e+00 1781.1 958 100.0
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 1.2e-194 684.5 1033 45.4
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 2.4e-155 553.9 988 44.0
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 4.3e-112 410.2 1079 34.4
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 9.6e-112 409.1 1087 34.8
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 2.4e-110 404.4 1093 33.8
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 4.8e-103 380.2 1113 32.8
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 9.9e-101 372.5 1090 32.1
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 3.2e-99 367.5 1058 32.2
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 4.2e-99 367.1 1085 32.3
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 3.5e-98 364.0 1098 31.5
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 7.9e-98 362.8 1093 32.5
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 1.0e-97 362.5 1103 32.2
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 3.3e-96 357.5 1054 32.6
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 4.3e-96 357.1 1059 33.2
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 7.4e-96 356.3 1097 31.0
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 9.0e-94 349.4 1106 33.0
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 2.6e-93 347.8 1093 31.4
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 1.0e-92 345.9 1038 32.7
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 1.3e-92 345.5 1050 32.8
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 3.2e-91 340.9 1091 32.4
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 1.6e-90 338.6 1059 31.4
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 1.3e-89 335.5 1030 32.7
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.1e-88 332.4 1095 30.5
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 2.5e-88 331.3 1049 31.1
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 7.4e-88 329.7 1032 31.6
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.3e-87 328.9 1097 30.6
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.3e-87 328.9 1104 30.5
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 1.6e-87 328.6 1098 31.4
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.8e-87 327.8 1097 30.4
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 9.0e-86 322.8 1101 31.3
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 2.0e-85 321.6 1049 30.8
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 2.0e-85 321.6 1053 31.7
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 6.5e-84 316.6 1096 30.6
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.1e-83 315.8 1001 32.0
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 1.4e-83 315.5 1003 32.0
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 2.5e-83 314.7 1043 31.4
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 1.2e-82 312.4 1015 32.4
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.3e-81 308.1 1024 32.4
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 1.5e-80 305.4 1018 31.5
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.5e-80 304.7 1102 30.6
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 2.2e-79 301.6 1008 30.8
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.8e-79 301.2 1089 30.4
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 4.8e-79 300.4 973 30.6
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 6.3e-79 300.1 1073 29.1
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 2.6e-77 294.7 1012 31.8
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 3.4e-77 294.3 1096 29.2
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 7.7e-77 293.1 1025 30.7
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 2.5e-72 278.1 977 29.9
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 4.3e-72 277.3 981 28.7
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 5.7e-72 276.9 1069 28.3
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 7.4e-72 276.6 1061 29.0
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 6.3e-71 273.5 1063 28.8
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.2e-69 269.2 1057 29.5
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 2.6e-69 268.1 1071 28.2
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 9.4e-67 259.6 868 31.9
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 5.1e-65 253.8 1044 27.3
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 1.5e-64 252.3 1069 29.0
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 1.7e-63 248.8 1090 28.4
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.1e-62 246.1 1111 28.4
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 3.1e-62 244.6 902 32.6
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 3.1e-62 244.6 1106 27.8
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 5.3e-62 243.8 1069 28.7
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 1.5e-61 242.3 1066 28.0
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.9e-61 240.4 1040 28.7
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.0e-60 239.6 995 29.4
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 5.5e-59 233.8 1094 27.1
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 2.3e-57 228.4 1053 27.9
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 3.9e-57 227.6 990 27.4
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 6.7e-57 226.9 1041 26.6
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 1.1e-56 226.1 1047 28.3
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 2.2e-55 221.9 1109 27.6
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 6.3e-55 220.3 1090 27.2
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 2.4e-54 218.4 897 29.8
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.0e-52 210.7 1023 26.4
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 1.5e-51 209.1 984 26.7
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.9e-51 208.8 822 30.9
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 3.2e-51 208.0 398 39.4
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.3e-49 201.8 972 28.6
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 1.5e-48 199.1 973 26.8
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 4.4e-48 197.6 974 27.4
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 9.8e-48 196.4 1046 27.1
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 1.3e-47 196.1 972 26.2
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 2.2e-47 195.3 975 26.5
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 4.8e-47 194.1 969 25.8
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 6.3e-47 193.7 968 27.4
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 1.4e-46 192.6 976 25.9
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 1.8e-46 192.2 968 25.5
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 9.1e-46 189.9 977 25.6
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 1.6e-45 189.1 985 28.1
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 7.7e-45 186.8 966 26.7
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 5.0e-44 184.1 1075 25.8
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 2.0e-40 172.2 971 26.3
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 4.4e-40 171.0 969 25.7
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 4.4e-40 171.0 216 46.3
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 4.4e-40 171.0 962 25.3
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 7.5e-40 170.2 975 26.3
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 8.6e-36 156.8 647 29.1
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 1.2e-34 152.9 1230 25.0
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 8.3e-31 140.2 194 42.3
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 1.1e-30 139.8 891 26.2
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 9.2e-30 136.7 865 26.8
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 4.3e-27 127.9 362 32.0
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 7.3e-27 127.1 1019 24.6
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 3.7e-23 114.8 1005 24.9
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 1.9e-22 112.5 120 47.5
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 7.8e-21 107.1 795 24.7
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.0e-20 105.1 973 24.5
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 5.0e-20 104.4 416 27.6
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 8.1e-18 97.1 635 26.9
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 1.5e-16 92.8 213 31.0
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 3.9e-12 78.2 844 23.0
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 3.9e-12 78.2 1018 21.9
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 1.5e-11 76.3 848 24.2
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 2.5e-11 75.5 527 24.7
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 7.3e-11 73.9 866 21.9
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.2e-10 73.2 830 23.5
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.6e-10 72.8 219 30.1
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 2.8e-10 72.0 872 22.4
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 6.2e-10 70.9 833 21.6
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 6.2e-10 70.9 238 32.4
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 1.1e-09 70.1 856 22.9
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.8e-09 69.3 105 41.0
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.3e-09 68.9 154 31.2
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 8.9e-09 67.0 101 34.7
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.5e-08 66.2 190 29.5
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 1.5e-08 66.2 864 22.5
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.0e-08 65.9 157 32.5
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.6e-08 65.5 102 40.2
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 3.4e-08 65.1 831 21.5
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 3.4e-08 65.1 874 22.0
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 4.4e-08 64.7 863 22.4
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 4.4e-08 64.7 851 21.0
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 5.8e-08 64.3 910 21.5
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 9.9e-08 63.5 81 40.7
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.3e-07 63.2 143 33.6
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 1.3e-07 63.2 207 30.0
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 2.2e-07 62.4 839 22.2
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 2.9e-07 62.0 864 22.9
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 6.4e-07 60.8 165 29.7
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 1.9e-06 59.3 123 31.7
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.9e-06 59.3 857 22.8
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 2.4e-06 58.9 815 22.3
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 5.4e-06 57.8 101 37.6
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 7.1e-06 57.4 850 23.5
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 7.1e-06 57.4 405 23.2
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 7.1e-06 57.4 897 23.5
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 9.2e-06 57.0 858 21.8
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 9.2e-06 57.0 204 28.4
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 9.2e-06 57.0 176 25.6


User provided reference genes

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