Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 7.9e-58 226.9 113 100.0
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 6.3e-31 137.5 106 67.0
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 1.3e-28 129.8 100 68.0
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.3e-28 129.8 106 67.9
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 5.0e-28 127.9 106 67.9
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.1e-27 126.7 107 66.4
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 2.5e-27 125.6 99 66.7
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 5.6e-27 124.4 98 68.4
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 9.5e-27 123.6 106 63.2
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 1.6e-26 122.9 99 62.6
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 2.8e-26 122.1 95 67.4
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 3.6e-26 121.7 99 67.7
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 4.7e-26 121.3 98 66.3
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 6.1e-26 120.9 101 65.3
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 6.1e-26 120.9 98 67.3
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 8.0e-26 120.6 99 61.6
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 8.0e-26 120.6 106 61.3
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.0e-25 120.2 98 62.2
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.4e-25 119.8 98 64.3
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 1.4e-25 119.8 98 66.3
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 1.8e-25 119.4 106 64.2
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 1.8e-25 119.4 106 65.1
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 1.8e-25 119.4 98 67.3
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 3.0e-25 118.6 90 68.9
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 4.0e-25 118.2 98 65.3
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 4.0e-25 118.2 95 66.3
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 6.8e-25 117.5 102 60.8
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 8.9e-25 117.1 95 65.3
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 8.9e-25 117.1 106 63.2
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 8.9e-25 117.1 106 63.2
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 8.9e-25 117.1 97 68.0
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 1.2e-24 116.7 98 59.2
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.5e-24 116.3 106 60.4
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.5e-24 116.3 97 68.0
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 1.5e-24 116.3 106 63.2
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 1.5e-24 116.3 98 65.3
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 2.0e-24 115.9 95 62.1
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 2.0e-24 115.9 106 62.3
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 2.6e-24 115.5 96 65.6
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 2.6e-24 115.5 109 62.4
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 3.4e-24 115.2 101 66.3
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.4e-24 115.2 89 71.9
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 4.4e-24 114.8 100 63.0
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 4.4e-24 114.8 106 61.3
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 5.7e-24 114.4 89 68.5
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 5.7e-24 114.4 98 62.2
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 7.5e-24 114.0 98 62.2
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 7.5e-24 114.0 106 61.3
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 7.5e-24 114.0 98 67.3
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 7.5e-24 114.0 106 60.4
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 7.5e-24 114.0 106 60.4
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 9.8e-24 113.6 106 62.3
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 9.8e-24 113.6 97 67.0
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 1.7e-23 112.8 93 65.6
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 1.7e-23 112.8 98 63.3
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.2e-23 112.5 106 59.4
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 2.9e-23 112.1 111 58.6
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 2.9e-23 112.1 95 62.1
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.9e-23 112.1 106 61.3
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 2.9e-23 112.1 106 61.3
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 3.7e-23 111.7 98 67.3
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 4.9e-23 111.3 106 59.4
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 6.4e-23 110.9 98 58.2
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 6.4e-23 110.9 98 63.3
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 6.4e-23 110.9 97 64.9
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 8.3e-23 110.5 106 61.3
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 1.1e-22 110.2 98 61.2
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.1e-22 110.2 108 58.3
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 1.1e-22 110.2 98 61.2
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.8e-22 109.4 106 56.6
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 2.4e-22 109.0 106 60.4
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.4e-22 109.0 95 63.2
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 2.4e-22 109.0 95 61.1
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 3.2e-22 108.6 95 61.1
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 4.1e-22 108.2 100 62.0
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 7.0e-22 107.5 95 58.9
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 7.0e-22 107.5 95 58.9
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 7.0e-22 107.5 95 58.9
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 7.0e-22 107.5 95 58.9
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 9.2e-22 107.1 106 58.5
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 1.2e-21 106.7 90 63.3
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.2e-21 106.7 88 64.8
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 1.2e-21 106.7 107 57.9
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 1.6e-21 106.3 101 58.4
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.6e-21 106.3 72 73.6
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 2.0e-21 105.9 92 64.1
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 5.9e-21 104.4 90 60.0
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 7.8e-21 104.0 109 57.8
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 7.8e-21 104.0 66 78.8
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 7.8e-21 104.0 66 78.8
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 1.3e-20 103.2 83 69.9
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 1.3e-20 103.2 66 77.3
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 1.7e-20 102.8 80 68.8
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 1.7e-20 102.8 66 77.3
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 1.7e-20 102.8 98 58.2
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 2.3e-20 102.4 66 78.8
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 2.3e-20 102.4 80 70.0
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 2.3e-20 102.4 66 77.3
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 2.3e-20 102.4 66 80.3
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 2.3e-20 102.4 78 70.5
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 3.0e-20 102.1 99 56.6
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 3.0e-20 102.1 98 60.2
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 3.0e-20 102.1 99 58.6
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 3.0e-20 102.1 106 57.5
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 3.9e-20 101.7 90 62.2
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 3.9e-20 101.7 108 57.4
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 3.9e-20 101.7 79 67.1
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 3.9e-20 101.7 106 55.7
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 3.9e-20 101.7 66 77.3
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 5.0e-20 101.3 93 55.9
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 6.6e-20 100.9 67 79.1
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 8.6e-20 100.5 58 84.5
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 1.5e-19 99.8 66 74.2
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 1.9e-19 99.4 58 86.2
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 2.5e-19 99.0 92 60.9
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 3.3e-19 98.6 66 75.8
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 4.3e-19 98.2 96 59.4
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 5.6e-19 97.8 103 58.3
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 7.3e-19 97.4 67 73.1
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 7.3e-19 97.4 106 58.5
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 1.2e-18 96.7 106 50.9
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.6e-18 96.3 59 81.4
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 1.6e-18 96.3 90 60.0
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 3.6e-18 95.1 93 57.0
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 8.0e-18 94.0 61 75.4
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 1.4e-17 93.2 59 76.3
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.8e-17 92.8 59 76.3
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 2.0e-16 89.4 67 68.7
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 2.9e-15 85.5 96 52.1
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.1e-14 83.6 131 45.0
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 1.4e-14 83.2 81 53.1
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 3.2e-14 82.0 65 63.1
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 5.4e-14 81.3 68 58.8
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 9.2e-14 80.5 65 63.1
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.6e-13 79.7 82 53.7
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 7.8e-13 77.4 57 68.4
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 7.8e-13 77.4 82 51.2
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 1.0e-12 77.0 82 51.2
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.7e-12 76.3 60 60.0
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 1.5e-11 73.2 65 58.5
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 3.6e-10 68.6 67 56.7
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 1.4e-09 66.6 57 56.1
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 4.0e-09 65.1 56 64.3
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 4.0e-09 65.1 56 64.3
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 7.5e-08 60.8 44 65.9
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 4.9e-07 58.2 32 87.5
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 6.4e-07 57.8 48 56.2
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 8.3e-07 57.4 57 47.4
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 4.1e-06 55.1 44 61.4
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 5.4e-06 54.7 82 43.9
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 7.1e-06 54.3 62 46.8
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 7.1e-06 54.3 39 66.7


User provided reference genes

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