Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 7.0e-75 283.9 144 100.0
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 7.0e-75 283.9 144 100.0
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 2.2e-73 278.9 144 97.9
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.3e-33 146.0 75 96.0
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 7.3e-32 141.0 75 90.7
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.8e-28 128.6 75 80.0
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.2e-27 125.6 71 81.7
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.6e-26 123.2 72 83.3
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.7e-26 122.5 75 76.0
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 4.6e-26 121.7 70 81.4
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 6.0e-26 121.3 65 87.7
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 6.0e-26 121.3 68 80.9
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 7.8e-26 120.9 72 76.4
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.7e-25 119.8 71 76.1
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.7e-25 119.8 70 80.0
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.3e-25 119.4 72 77.8
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.3e-25 119.4 72 79.2
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 3.9e-25 118.6 73 76.7
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 3.9e-25 118.6 68 80.9
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.9e-25 118.6 68 80.9
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.9e-25 118.6 68 80.9
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.9e-25 118.6 72 79.2
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 5.1e-25 118.2 68 82.4
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 5.1e-25 118.2 72 79.2
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.1e-25 118.2 77 74.0
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 5.1e-25 118.2 68 79.4
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 6.6e-25 117.9 72 73.6
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 8.7e-25 117.5 65 81.5
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.7e-25 117.5 64 82.8
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.1e-24 117.1 85 64.7
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.1e-24 117.1 72 77.8
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.5e-24 116.7 68 79.4
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.5e-24 116.7 68 77.9
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.5e-24 116.7 65 83.1
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 1.5e-24 116.7 67 80.6
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 2.5e-24 115.9 73 75.3
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.5e-24 115.9 72 77.8
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.5e-24 115.9 65 80.0
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.5e-24 115.9 75 76.0
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.3e-24 115.5 65 86.2
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 4.3e-24 115.2 73 75.3
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 4.3e-24 115.2 68 79.4
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 4.3e-24 115.2 67 76.1
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 5.6e-24 114.8 72 73.6
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 5.6e-24 114.8 65 80.0
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.6e-24 114.8 72 73.6
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.6e-24 114.8 72 73.6
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 5.6e-24 114.8 71 71.8
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 5.6e-24 114.8 71 71.8
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 9.6e-24 114.0 73 74.0
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 9.6e-24 114.0 73 74.0
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.2e-23 113.6 68 76.5
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 1.2e-23 113.6 81 67.9
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 2.1e-23 112.8 65 83.1
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.1e-23 112.8 70 74.3
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 2.8e-23 112.5 65 78.5
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 2.8e-23 112.5 65 78.5
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 3.6e-23 112.1 73 72.6
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.6e-23 112.1 68 75.0
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 3.6e-23 112.1 65 73.8
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 3.6e-23 112.1 70 75.7
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 4.7e-23 111.7 73 72.6
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 4.7e-23 111.7 73 69.9
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 4.7e-23 111.7 67 76.1
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 6.2e-23 111.3 65 76.9
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 6.2e-23 111.3 67 74.6
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 8.1e-23 110.9 77 68.8
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 8.1e-23 110.9 66 77.3
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 8.1e-23 110.9 68 72.1
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.1e-22 110.5 68 72.1
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.1e-22 110.5 68 72.1
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.1e-22 110.5 68 72.1
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.1e-22 110.5 67 74.6
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.4e-22 110.2 66 75.8
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.4e-22 110.2 73 71.2
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.8e-22 109.8 66 75.8
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.8e-22 109.8 79 64.6
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 1.8e-22 109.8 68 75.0
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.4e-22 109.4 67 73.1
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 3.1e-22 109.0 73 71.2
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 3.1e-22 109.0 73 71.2
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.1e-22 109.0 65 76.9
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 3.1e-22 109.0 67 71.6
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 3.1e-22 109.0 67 71.6
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 4.0e-22 108.6 71 69.0
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 5.2e-22 108.2 67 74.6
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 6.9e-22 107.8 73 68.5
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 6.9e-22 107.8 72 70.8
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 6.9e-22 107.8 67 73.1
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 9.0e-22 107.5 68 72.1
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.0e-22 107.5 68 72.1
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 9.0e-22 107.5 68 72.1
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 9.0e-22 107.5 68 72.1
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 2.0e-21 106.3 67 73.1
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.0e-21 106.3 73 72.6
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 2.6e-21 105.9 65 69.2
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.4e-21 105.5 68 70.6
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 5.8e-21 104.8 65 73.8
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 9.9e-21 104.0 72 63.9
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 9.9e-21 104.0 65 69.2
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 1.7e-20 103.2 68 70.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 6.4e-20 101.3 68 69.1
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.4e-20 101.3 65 67.7
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 8.4e-20 100.9 68 69.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.4e-19 100.1 67 64.2
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.9e-19 99.8 65 67.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 4.2e-19 98.6 67 65.7
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.6e-18 96.7 77 61.0
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.6e-18 96.7 70 60.0
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.6e-18 96.7 65 66.2
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.7e-18 95.9 68 63.2
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 2.7e-18 95.9 70 64.3
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 3.5e-18 95.5 121 46.3
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 3.0e-17 92.4 53 83.0
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.7e-17 90.9 65 64.6
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 5.6e-16 88.2 55 72.7
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 5.6e-16 88.2 50 80.0
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 5.6e-16 88.2 69 56.5
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 5.6e-16 88.2 71 59.2
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.6e-15 86.7 47 85.1
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.6e-15 85.5 65 60.0
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.6e-15 85.5 64 60.9
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.4e-14 83.6 60 68.3
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 1.8e-14 83.2 60 61.7
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 3.1e-14 82.4 54 70.4
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 3.1e-14 82.4 48 81.2
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 3.1e-14 82.4 57 70.2
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 6.9e-14 81.3 48 75.0
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.5e-13 80.1 59 67.8
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 5.8e-13 78.2 48 75.0
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.3e-12 77.0 66 50.0
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.3e-12 77.0 80 48.8
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.7e-12 76.6 65 53.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 3.8e-12 75.5 52 65.4
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.2e-11 72.0 65 52.3
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.7e-10 69.3 48 64.6
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.3e-09 66.2 65 43.1
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 2.3e-09 66.2 66 40.9
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.9e-09 65.5 40 70.0
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 6.7e-09 64.7 48 60.4
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.7e-09 64.7 62 46.8
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 3.3e-08 62.4 75 48.0
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.3e-08 62.4 68 42.6
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.3e-08 62.4 70 41.4
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.4e-08 61.2 68 41.2
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 9.0e-06 54.3 77 41.6


User provided reference genes

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