Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 0.0e+00 2369.3 1208 100.0
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 0.0e+00 1562.0 1281 66.9
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 0.0e+00 1500.3 1319 63.2
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 0.0e+00 1437.9 1294 61.2
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 0.0e+00 1427.2 1300 61.5
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1410.6 1298 59.9
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1372.8 1297 59.4
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 0.0e+00 1360.9 1283 59.2
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 0.0e+00 1355.5 1297 58.2
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 0.0e+00 1350.9 1323 57.4
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 0.0e+00 1345.1 1291 58.3
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1340.9 1293 57.5
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 0.0e+00 1340.1 1293 57.9
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1339.7 1293 57.5
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 0.0e+00 1337.8 1280 57.5
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 0.0e+00 1330.5 1289 56.9
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 0.0e+00 1327.4 1293 56.4
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1327.4 1294 57.3
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 0.0e+00 1325.8 1286 57.3
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 0.0e+00 1322.0 1262 57.9
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1321.6 1319 56.3
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 0.0e+00 1319.7 1295 56.8
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1313.9 1366 55.2
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 0.0e+00 1307.4 1288 57.4
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 0.0e+00 1304.7 1283 56.5
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1302.7 1294 56.6
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 0.0e+00 1301.6 1292 56.6
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 0.0e+00 1300.0 1293 56.4
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 0.0e+00 1299.3 1292 56.3
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 0.0e+00 1299.3 1285 56.9
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 0.0e+00 1297.7 1287 56.9
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 0.0e+00 1295.8 1292 56.1
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 0.0e+00 1295.0 1291 56.2
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 0.0e+00 1294.3 1292 56.2
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 0.0e+00 1293.1 1286 57.2
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1292.7 1289 55.3
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 0.0e+00 1292.3 1294 55.5
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 0.0e+00 1291.9 1238 57.8
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1291.9 1289 55.0
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1290.0 1290 54.9
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 0.0e+00 1287.3 1292 55.6
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 0.0e+00 1286.9 1249 57.6
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 0.0e+00 1285.8 1264 57.5
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1284.2 1299 55.4
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 0.0e+00 1284.2 1214 58.0
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 0.0e+00 1279.6 1291 56.4
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 0.0e+00 1279.2 1286 55.5
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 0.0e+00 1275.8 1294 55.8
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1274.2 1290 55.7
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 0.0e+00 1272.7 1293 55.1
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 0.0e+00 1265.8 1293 55.3
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1265.8 1292 53.9
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1265.0 1300 54.2
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 0.0e+00 1259.6 1292 53.8
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1256.9 1292 53.3
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 0.0e+00 1256.1 1296 54.6
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 0.0e+00 1255.7 1292 53.3
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 0.0e+00 1255.0 1279 55.4
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 0.0e+00 1254.6 1191 57.7
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1252.7 1291 53.5
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 0.0e+00 1248.8 1238 56.9
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 0.0e+00 1248.0 1290 54.4
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1248.0 1305 54.1
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1247.6 1300 53.8
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 0.0e+00 1246.5 1289 54.0
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1245.3 1315 54.1
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 0.0e+00 1244.2 1282 54.4
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 0.0e+00 1243.4 1291 53.2
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1240.7 1294 54.0
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 0.0e+00 1237.6 1294 53.9
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1237.2 1294 54.0
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 0.0e+00 1236.9 1291 54.1
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 0.0e+00 1236.5 1295 53.8
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 0.0e+00 1236.5 1289 54.5
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1236.1 1293 53.3
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1235.7 1295 53.4
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 0.0e+00 1235.3 1291 54.3
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 0.0e+00 1233.0 1300 52.9
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1233.0 1296 53.4
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 0.0e+00 1233.0 1274 54.8
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 0.0e+00 1232.2 1290 53.6
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 0.0e+00 1231.1 1292 53.7
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 0.0e+00 1230.7 1292 53.6
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1228.0 1286 53.0
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1224.9 1293 53.0
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 0.0e+00 1221.8 1291 52.7
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 0.0e+00 1221.1 1290 53.5
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 0.0e+00 1219.9 1298 52.4
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 0.0e+00 1211.8 1296 51.9
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1211.4 1283 51.8
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 0.0e+00 1211.4 1296 52.5
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 0.0e+00 1208.4 1283 51.8
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 0.0e+00 1197.2 1312 51.7
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 0.0e+00 1188.7 1347 50.9
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 0.0e+00 1166.4 1320 50.7
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 0.0e+00 1156.7 1252 52.2
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 0.0e+00 1152.1 1293 51.6
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 0.0e+00 1118.6 1231 52.2
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 0.0e+00 1099.3 1292 49.1
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 0.0e+00 1091.3 1295 48.9
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 0.0e+00 1088.2 1149 52.1
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 0.0e+00 1087.0 1217 49.5
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1083.9 1179 52.1
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 0.0e+00 1077.4 1206 49.7
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 2.5e-298 1029.2 1006 55.0
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 1.2e-297 1026.9 1290 47.3
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 4.6e-297 1025.0 1362 45.6
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 1.4e-293 1013.4 1159 50.0
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 4.1e-293 1011.9 1249 47.6
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 9.4e-290 1000.7 1215 50.5
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 1.4e-277 960.3 942 53.4
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 3.1e-269 932.6 1084 49.2
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 1.1e-240 837.8 1209 42.4
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 2.3e-235 820.1 1392 38.5
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 8.9e-232 808.1 1392 37.9
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 4.3e-226 789.3 1319 38.8
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 2.1e-225 786.9 678 61.4
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 8.4e-222 775.0 1059 43.9
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 8.1e-209 731.9 823 49.8
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 9.3e-197 691.8 888 45.4
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 1.7e-190 671.0 805 46.7
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 8.7e-187 658.7 920 43.4
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 8.2e-161 572.4 1113 35.5
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 1.2e-159 568.5 647 52.2
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 1.8e-144 518.1 1278 31.9
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 9.2e-144 515.8 1385 29.2
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 1.4e-136 491.9 568 49.8
Hund02131 Selenicereus undatus HOM05D003993 ORTHO05D005336 7.8e-135 486.1 624 46.8
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 6.6e-134 483.0 1277 32.3
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 4.2e-104 384.0 805 36.4
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 1.5e-101 375.6 805 36.0
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 8.8e-70 270.0 221 69.2
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 1.5e-69 269.2 694 31.4
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 1.5e-61 242.7 384 46.6
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 7.4e-61 240.4 254 54.7
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 1.3e-60 239.6 307 47.6
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 2.0e-58 232.3 288 49.0
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 5.3e-51 207.6 212 56.6
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 4.7e-47 194.5 297 41.4
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 1.2e-45 189.9 189 57.1
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 1.1e-43 183.3 285 38.6
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 4.1e-43 181.4 183 55.2
CDE05G2526 Ceratophyllum demersum HOM05D003993 ORTHO05D005336 3.6e-39 168.3 97 90.7
SHI50190 Sapria himalayana HOM05D003993 ORTHO05D005336 5.7e-37 161.0 131 67.9
Rhsim07G0149200 Rhododendron simsii HOM05D003993 ORTHO05D005336 1.7e-33 149.4 108 67.6
arahy.Tifrunner.gnm1.ann1.H4PP15 Arachis hypogaea HOM05D003993 ORTHO05D005336 3.8e-33 148.3 229 41.9
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 3.3e-32 145.2 175 48.0
Gorai.006G047200 Gossypium raimondii HOM05D003993 ORTHO05D005336 1.5e-29 136.3 173 47.4
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 4.5e-26 124.8 135 49.6
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 5.9e-26 124.4 79 72.2
MBI18_g40553_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 1.5e-24 119.8 66 89.4
arahy.Tifrunner.gnm1.ann1.8I3UM6 Arachis hypogaea HOM05D003993 ORTHO05D005336 8.0e-23 114.0 106 54.7
VMungo1127G0084 Vigna mungo HOM05D003993 ORTHO05D005336 8.0e-23 114.0 123 53.7
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 9.8e-21 107.1 87 58.6
Zm00001eb128700 Zea mays HOM05D003993 ORTHO05D014907 2.7e-18 99.0 131 46.6
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 1.3e-17 96.7 136 46.3
arahy.Tifrunner.gnm1.ann1.BQ4HID Arachis hypogaea HOM05D003993 ORTHO05D005336 2.5e-16 92.4 81 53.1
Zm00001eb157050 Zea mays HOM05D003993 ORTHO05D011419 9.5e-16 90.5 139 41.7
Rhsim07G0135200 Rhododendron simsii HOM05D000810 ORTHO05D001064 1.4e-14 86.7 65 63.1
Gorai.001G142700 Gossypium raimondii HOM05D003993 ORTHO05D014907 4.0e-14 85.1 178 34.8
Gohir.A05G172101 Gossypium hirsutum HOM05D003993 ORTHO05D014907 3.4e-13 82.0 178 34.3
Gohir.A05G278766 Gossypium hirsutum HOM05D003993 ORTHO05D014907 3.4e-13 82.0 178 34.3
Gohir.D01G097266 Gossypium hirsutum HOM05D003993 ORTHO05D014907 7.5e-13 80.9 71 56.3
Gorai.002G111900 Gossypium raimondii HOM05D003993 ORTHO05D014907 7.5e-13 80.9 178 33.7
Gohir.A10G041333 Gossypium hirsutum HOM05D003993 ORTHO05D014907 4.9e-12 78.2 84 51.2
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 4.9e-12 78.2 79 46.8
arahy.Tifrunner.gnm1.ann1.5R4HUS Arachis hypogaea HOM05D003993 ORTHO05D014907 6.4e-12 77.8 58 69.0
arahy.Tifrunner.gnm1.ann1.GX0MR1 Arachis hypogaea HOM05D003993 ORTHO05D014907 1.9e-11 76.3 53 73.6
arahy.Tifrunner.gnm1.ann1.SWME7Z Arachis hypogaea HOM05D003993 ORTHO05D014907 1.9e-11 76.3 61 67.2
SGA_v2.0_scaffold131G34393 Striga asiatica HOM05D001383 ORTHO05D000309 1.6e-10 73.2 50 82.0
SGA_v2.0_scaffold23G10162 Striga asiatica HOM05D001383 ORTHO05D404697 1.0e-09 70.5 48 81.2
TPR.G25926 Trifolium pratense HOM05D001139 ORTHO05D000936 2.3e-09 69.3 52 65.4
BcaC05g28290 Brassica carinata HOM05D003993 ORTHO05D005336 1.5e-08 66.6 80 43.8
arahy.Tifrunner.gnm1.ann1.N54FIB Arachis hypogaea HOM05D003993 ORTHO05D014907 5.6e-08 64.7 102 35.3
PGSC0003DMG402019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 7.3e-08 64.3 59 61.0
Gohir.A10G071633 Gossypium hirsutum HOM05D003993 ORTHO05D014907 2.1e-07 62.8 64 50.0
BolC5t33071H Brassica oleracea HOM05D000001 ORTHO05D000003 2.8e-07 62.4 82 40.2


User provided reference genes

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