Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 3.6e-109 398.3 205 100.0
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 2.2e-45 186.4 104 86.5
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.4e-44 183.7 104 83.7
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 5.3e-44 181.8 104 82.7
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.7e-42 176.8 104 81.7
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.1e-41 174.1 104 77.9
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.9e-41 173.3 104 80.8
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 1.9e-41 173.3 104 79.8
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 2.5e-41 172.9 105 81.9
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 2.5e-41 172.9 104 77.9
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 7.2e-41 171.4 105 80.0
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 1.6e-40 170.2 104 79.8
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 2.7e-40 169.5 104 79.8
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.0e-39 167.5 104 76.0
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 1.8e-39 166.8 104 76.9
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.0e-38 163.3 104 74.0
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 9.7e-38 161.0 103 73.8
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 9.7e-38 161.0 104 76.9
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 1.3e-37 160.6 104 73.1
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 4.8e-37 158.7 104 73.1
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 6.3e-37 158.3 104 72.1
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 6.3e-37 158.3 104 73.1
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.4e-36 157.1 104 72.1
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.4e-36 157.1 103 71.8
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.8e-36 156.8 104 73.1
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.1e-36 156.0 104 72.1
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 5.3e-36 155.2 105 72.4
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 5.3e-36 155.2 103 70.9
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 7.0e-36 154.8 105 73.3
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 7.0e-36 154.8 103 72.8
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 7.0e-36 154.8 104 71.2
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 7.0e-36 154.8 104 69.2
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 9.1e-36 154.5 104 73.1
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.2e-35 154.1 104 71.2
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 1.2e-35 154.1 104 70.2
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.2e-35 154.1 103 70.9
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 1.6e-35 153.7 104 72.1
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 2.6e-35 152.9 104 69.2
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 4.5e-35 152.1 105 72.4
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 4.5e-35 152.1 105 70.5
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 5.9e-35 151.8 104 70.2
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 1.0e-34 151.0 103 67.0
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.0e-34 151.0 105 72.4
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.3e-34 150.6 105 72.4
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 1.7e-34 150.2 105 69.5
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.7e-34 150.2 104 69.2
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 2.2e-34 149.8 104 73.1
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 2.9e-34 149.4 105 70.5
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.9e-34 149.4 104 71.2
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.8e-34 149.1 104 66.3
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 3.8e-34 149.1 104 66.3
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 3.8e-34 149.1 104 66.3
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 3.8e-34 149.1 94 75.5
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 3.8e-34 149.1 103 67.0
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 5.0e-34 148.7 104 66.3
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 5.0e-34 148.7 104 69.2
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 6.5e-34 148.3 104 66.3
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 6.5e-34 148.3 106 69.8
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 8.5e-34 147.9 104 68.3
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 8.5e-34 147.9 104 68.3
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.1e-33 147.5 104 73.1
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.5e-33 147.1 105 66.7
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.5e-33 147.1 104 73.1
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.5e-33 147.1 104 68.3
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.9e-33 146.7 104 65.4
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 3.2e-33 146.0 103 70.9
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 5.5e-33 145.2 104 65.4
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 5.5e-33 145.2 104 65.4
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 5.5e-33 145.2 104 65.4
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 7.2e-33 144.8 104 64.4
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 7.2e-33 144.8 104 64.4
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 7.2e-33 144.8 103 69.9
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 7.2e-33 144.8 84 84.5
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 9.4e-33 144.4 103 69.9
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.1e-32 143.3 84 83.3
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.7e-32 142.9 104 66.3
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 3.6e-32 142.5 105 66.7
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 6.1e-32 141.7 103 65.0
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 8.0e-32 141.4 104 65.4
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 8.0e-32 141.4 91 76.9
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 8.0e-32 141.4 103 66.0
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.0e-31 141.0 103 65.0
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.0e-31 141.0 104 67.3
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.4e-31 140.6 105 67.6
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.4e-31 140.6 105 67.6
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.0e-31 139.0 103 64.1
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 4.0e-31 139.0 143 49.7
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 4.0e-31 139.0 86 73.3
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 6.7e-31 138.3 105 67.6
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 6.7e-31 138.3 103 66.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 8.8e-31 137.9 103 64.1
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.2e-30 137.5 86 76.7
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.5e-30 137.1 104 63.5
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.5e-30 137.1 104 63.5
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 1.5e-30 137.1 103 61.2
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 2.0e-30 136.7 105 63.8
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 2.0e-30 136.7 99 66.7
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 2.0e-30 136.7 97 70.1
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 5.7e-30 135.2 105 62.9
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 5.7e-30 135.2 103 62.1
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 7.5e-30 134.8 105 63.8
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 7.5e-30 134.8 106 61.3
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 9.7e-30 134.4 102 65.7
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.3e-29 134.0 103 62.1
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 2.2e-29 133.3 96 64.6
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 2.2e-29 133.3 103 62.1
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 2.8e-29 132.9 105 63.8
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.8e-29 132.9 103 60.2
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 4.8e-29 132.1 103 61.2
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 8.2e-29 131.3 99 63.6
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 1.1e-28 131.0 92 69.6
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.1e-28 131.0 86 73.3
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.8e-28 130.2 103 59.2
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 2.4e-28 129.8 104 56.7
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 2.4e-28 129.8 104 60.6
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 5.3e-28 128.6 108 60.2
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.6e-27 127.1 89 68.5
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.6e-27 127.1 87 72.4
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 5.9e-27 125.2 117 56.4
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 5.9e-27 125.2 103 56.3
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.0e-26 124.4 87 71.3
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 1.0e-26 124.4 72 75.0
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 1.3e-26 124.0 104 61.5
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 1.3e-26 124.0 104 59.6
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 2.2e-26 123.2 104 60.6
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 2.9e-26 122.9 86 67.4
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 2.9e-26 122.9 86 67.4
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.5e-25 120.6 117 49.6
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.5e-25 120.6 104 60.6
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 3.2e-25 119.4 104 57.7
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 4.2e-25 119.0 90 60.0
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 5.5e-25 118.6 101 58.4
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 9.4e-25 117.9 102 56.9
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 9.4e-25 117.9 104 56.7
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 2.1e-24 116.7 87 64.4
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 4.7e-24 115.5 86 62.8
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 4.7e-24 115.5 104 56.7
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.4e-23 114.0 104 51.0
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 3.0e-23 112.8 88 65.9
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 8.8e-23 111.3 94 61.7
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.2e-22 110.9 86 61.6
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.5e-22 110.5 66 83.3
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 5.7e-22 108.6 104 49.0
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 9.1e-20 101.3 88 60.2
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 3.8e-18 95.9 102 49.0
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 6.5e-18 95.1 101 45.5
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 1.1e-17 94.4 74 68.9
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.2e-17 92.8 86 51.2
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 5.5e-17 92.0 101 44.6
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 2.8e-16 89.7 82 59.8
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 8.0e-16 88.2 102 43.1
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 4.0e-15 85.9 86 54.7
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 9.8e-14 81.3 59 67.8
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 7.8e-11 71.6 79 44.3
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 1.7e-10 70.5 107 42.1
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 2.9e-10 69.7 102 37.3
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 6.1e-08 62.0 102 35.3
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 3.0e-07 59.7 41 68.3
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 8.9e-07 58.2 65 44.6
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 8.9e-07 58.2 65 44.6


User provided reference genes

Program Settings