Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 2.8e-137 491.9 236 100.0
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.8e-91 339.7 229 68.6
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.3e-86 323.6 227 69.6
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 2.5e-85 319.3 229 66.8
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 1.6e-81 306.6 228 65.4
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 8.2e-81 304.3 230 63.0
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.1e-80 303.9 220 66.4
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.8e-80 303.1 230 63.0
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.6e-79 299.3 236 61.0
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 5.9e-79 298.1 224 62.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 2.2e-78 296.2 226 63.7
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 7.2e-77 291.2 229 60.7
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 7.2e-77 291.2 224 62.5
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 2.7e-76 289.3 235 61.3
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 2.7e-76 289.3 228 62.7
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 7.9e-76 287.7 223 61.4
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.0e-75 287.3 224 61.6
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.8e-75 286.6 224 62.9
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 3.9e-75 285.4 227 59.9
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 3.9e-75 285.4 228 60.1
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 3.9e-75 285.4 227 59.9
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.5e-74 283.5 227 59.9
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.5e-74 282.7 227 59.9
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 7.4e-74 281.2 225 61.3
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.3e-73 280.4 251 54.2
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.7e-73 278.9 221 60.2
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 6.3e-73 278.1 229 57.6
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 2.4e-72 276.2 227 55.9
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 5.3e-72 275.0 218 57.8
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.2e-71 273.9 226 58.4
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 2.6e-71 272.7 229 59.8
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 3.4e-71 272.3 227 59.5
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 4.5e-71 271.9 224 57.1
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.7e-70 270.0 226 57.1
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 2.2e-70 269.6 226 55.8
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 2.9e-70 269.2 227 55.1
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 2.9e-70 269.2 227 55.1
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 5.0e-70 268.5 228 60.1
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 6.5e-70 268.1 227 55.1
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.1e-69 267.3 227 55.5
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.9e-69 266.5 224 58.9
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 2.5e-69 266.2 228 54.8
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 2.5e-69 266.2 244 54.1
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 4.2e-69 265.4 230 57.8
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 5.5e-69 265.0 224 56.7
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 2.1e-68 263.1 228 56.1
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 7.9e-68 261.2 238 54.6
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.8e-67 260.0 220 60.0
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.8e-67 260.0 226 59.3
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.8e-67 260.0 267 52.4
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 2.3e-67 259.6 224 59.8
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.9e-67 258.8 226 58.8
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 5.1e-67 258.5 226 57.5
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 5.1e-67 258.5 224 55.8
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 2.0e-66 256.5 229 53.3
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 2.0e-66 256.5 231 53.7
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 2.6e-66 256.1 221 55.2
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.6e-66 256.1 224 59.4
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 3.3e-66 255.8 281 48.0
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 4.4e-66 255.4 228 53.9
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.7e-65 253.4 227 52.9
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 4.8e-65 251.9 210 58.6
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 6.3e-65 251.5 226 55.8
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 6.3e-65 251.5 220 55.9
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 8.2e-65 251.1 229 55.9
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 4.1e-64 248.8 217 56.2
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.1e-64 248.8 228 54.8
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 7.0e-64 248.1 227 52.9
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-63 247.3 213 54.9
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-63 247.3 213 54.9
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 3.5e-63 245.7 230 52.2
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 3.8e-62 242.3 214 55.6
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 3.8e-62 242.3 215 54.0
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 2.5e-61 239.6 228 51.3
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 9.4e-61 237.7 228 50.4
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.6e-60 236.9 227 51.1
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 2.1e-60 236.5 216 53.7
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 1.4e-59 233.8 216 54.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.8e-59 233.4 228 50.4
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 1.8e-59 233.4 226 50.9
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.3e-59 233.0 216 53.2
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 4.0e-59 232.3 217 54.8
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 4.0e-59 232.3 216 53.7
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 6.7e-59 231.5 216 53.2
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 5.7e-58 228.4 219 52.5
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 7.5e-58 228.0 226 53.1
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 9.7e-58 227.6 217 52.5
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 9.7e-58 227.6 217 52.5
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.8e-57 225.3 218 52.8
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 8.2e-57 224.6 212 54.2
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.8e-56 223.4 216 52.3
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 2.0e-55 219.9 216 50.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.6e-55 219.5 186 56.5
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 1.0e-54 217.6 219 52.1
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.7e-54 216.9 221 51.1
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.9e-54 216.1 215 48.4
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.2e-53 212.2 179 57.5
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.2e-52 210.7 213 49.8
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.1e-52 209.9 227 51.1
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.8e-51 206.8 203 50.7
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.3e-51 206.5 200 52.5
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 3.0e-51 206.1 210 47.1
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.5e-50 203.8 145 66.2
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 1.7e-49 200.3 168 60.7
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 3.7e-49 199.1 223 47.5
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 8.3e-49 198.0 230 46.1
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 8.3e-49 198.0 219 48.9
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.6e-47 193.7 221 48.0
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 4.5e-47 192.2 228 46.1
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.7e-46 190.3 234 43.2
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.5e-46 188.3 230 45.7
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.9e-45 186.8 141 60.3
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 2.5e-45 186.4 225 46.2
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 1.2e-44 184.1 221 45.7
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 2.1e-44 183.3 221 45.7
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 2.7e-44 183.0 221 44.8
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.8e-43 180.3 130 64.6
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 2.2e-41 173.3 160 55.6
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.4e-40 170.6 177 46.9
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 1.6e-39 167.2 134 56.0
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 2.7e-39 166.4 224 40.2
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 1.1e-37 161.0 225 40.9
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.4e-35 154.1 245 38.4
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.3e-33 147.5 219 40.2
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 2.9e-33 146.4 219 41.1
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.5e-31 139.4 106 60.4
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 5.9e-31 138.7 218 39.0
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 3.9e-30 136.0 219 39.7
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 1.0e-27 127.9 165 44.2
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 8.3e-25 118.2 118 49.2
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.0e-22 111.3 119 44.5
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 3.9e-22 109.4 116 51.7
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 4.3e-21 105.9 87 50.6
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 3.4e-18 96.3 129 41.1
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 5.8e-18 95.5 59 66.1
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 2.2e-17 93.6 113 47.8
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.6e-15 87.4 109 44.0
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 2.1e-15 87.0 60 60.0
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 1.3e-14 84.3 101 46.5
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 9.9e-10 68.2 80 47.5
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 3.7e-09 66.2 169 30.2
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 6.4e-09 65.5 161 31.7
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 7.1e-08 62.0 157 29.3
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 7.1e-08 62.0 201 25.9
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 9.2e-08 61.6 182 25.8
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 9.2e-08 61.6 172 27.3
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 1.2e-07 61.2 183 27.3
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 2.7e-07 60.1 188 26.6
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 2.7e-07 60.1 172 27.3
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 4.6e-07 59.3 180 26.7
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 7.8e-07 58.5 180 27.8
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.0e-06 58.2 201 25.4
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 1.3e-06 57.8 183 29.0
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 1.7e-06 57.4 60 45.0
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 1.7e-06 57.4 186 26.9
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 1.7e-06 57.4 157 29.9
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.0e-06 56.6 151 26.5
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.0e-06 56.6 151 26.5
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 3.9e-06 56.2 173 26.0
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 5.1e-06 55.8 160 28.8
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 5.1e-06 55.8 182 27.5
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 6.6e-06 55.5 157 26.1
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 8.6e-06 55.1 186 24.7


User provided reference genes

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