Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12883 Striga asiatica HOM05D002093 ORTHO05D051380 6.1e-52 207.2 106 100.0
SGA_v2.0_scaffold312G48267 Striga asiatica HOM05D031272 ORTHO05D051380 5.8e-18 94.4 58 82.8
SGA_v2.0_scaffold94G28535 Striga asiatica HOM05D002093 ORTHO05D401204 2.6e-10 68.9 40 80.0
MSTRG.2884 Avicennia marina HOM05D002093 ORTHO05D003877 8.4e-09 63.9 61 57.4
Migut.H00432 Erythranthe guttata HOM05D002093 ORTHO05D003877 8.4e-09 63.9 46 67.4
COL.COLO4_11417 Corchorus olitorius HOM05D002093 ORTHO05D003877 1.9e-08 62.8 60 55.0
Oeu018957.1 Olea europaea HOM05D002093 ORTHO05D003877 1.9e-08 62.8 60 51.7
CiPaw.02G008200 Carya illinoinensis HOM05D002093 ORTHO05D003877 2.4e-08 62.4 60 55.0
Medtr5g017410 Medicago truncatula HOM05D002093 ORTHO05D003877 5.4e-08 61.2 47 61.7
Oeu031953.1 Olea europaea HOM05D002093 ORTHO05D003877 5.4e-08 61.2 46 60.9
VMungo1215G2131 Vigna mungo HOM05D002093 ORTHO05D003877 5.4e-08 61.2 47 61.7
MSTRG.15388 Avicennia marina HOM05D002093 ORTHO05D003877 7.1e-08 60.8 61 52.5
CANSAT01G0818 Cannabis sativa HOM05D002093 ORTHO05D003877 7.1e-08 60.8 60 55.0
Ca_24769_v3 Cicer arietinum L. HOM05D002093 ORTHO05D003877 7.1e-08 60.8 47 61.7
Duzib147G0327 Durio zibethinus HOM05D002093 ORTHO05D003877 7.1e-08 60.8 60 55.0
Phvul.002G018800 Phaseolus vulgaris HOM05D002093 ORTHO05D003877 9.2e-08 60.5 47 61.7
Cc07_g06000 Coffea canephora HOM05D002093 ORTHO05D003877 1.2e-07 60.1 60 55.0
MELO3C000152.2 Cucumis melo HOM05D002093 ORTHO05D003877 1.2e-07 60.1 60 55.0
Hma1.2p1_1705F.1_g298390 Hydrangea macrophylla HOM05D002093 ORTHO05D003877 1.2e-07 60.1 60 53.3
TPR.G30703 Trifolium pratense HOM05D002093 ORTHO05D003877 1.2e-07 60.1 47 59.6
ClCG01G016830 Citrullus lanatus HOM05D002093 ORTHO05D003877 1.6e-07 59.7 60 55.0
Migut.K00766 Erythranthe guttata HOM05D002093 ORTHO05D003877 1.6e-07 59.7 46 63.0
CAN.G660.8 Capsicum annuum HOM05D002093 ORTHO05D003877 2.1e-07 59.3 60 56.7
Glyma.01G186100 Glycine max HOM05D002093 ORTHO05D003877 2.1e-07 59.3 47 59.6
Glyma.11G055900 Glycine max HOM05D002093 ORTHO05D003877 2.1e-07 59.3 47 59.6
Rhsim08G0100300 Rhododendron simsii HOM05D002093 ORTHO05D003877 2.1e-07 59.3 60 51.7
Solyc02g090870.1 Solanum lycopersicum HOM05D002093 ORTHO05D003877 2.1e-07 59.3 60 56.7
Sopen02g035520 Solanum pennellii HOM05D002093 ORTHO05D003877 2.1e-07 59.3 60 56.7
PGSC0003DMG400004041 Solanum tuberosum HOM05D002093 ORTHO05D003877 2.1e-07 59.3 60 56.7
CsaV3_6G043270 Cucumis sativus L. HOM05D002093 ORTHO05D003877 2.7e-07 58.9 60 53.3
Gohir.A11G192500 Gossypium hirsutum HOM05D002093 ORTHO05D003877 2.7e-07 58.9 45 64.4
Sabra05G0112200 Salix brachista HOM05D002093 ORTHO05D003877 2.7e-07 58.9 45 62.2
TWI73G0884 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 2.7e-07 58.9 60 51.7
GSVIVG01022129001 Vitis vinifera HOM05D002093 ORTHO05D003877 2.7e-07 58.9 60 53.3
CSS0014053 Camellia sinensis var. sinensis HOM05D002093 ORTHO05D003877 3.5e-07 58.5 46 60.9
Gohir.A12G070900 Gossypium hirsutum HOM05D002093 ORTHO05D003877 3.5e-07 58.5 60 53.3
Gohir.D12G069400 Gossypium hirsutum HOM05D002093 ORTHO05D003877 3.5e-07 58.5 60 53.3
Gorai.008G076000 Gossypium raimondii HOM05D002093 ORTHO05D003877 3.5e-07 58.5 60 53.3
Lj2g0008573 Lotus japonicus HOM05D002093 ORTHO05D003877 3.5e-07 58.5 47 57.4
Potri.007G044200 Populus trichocarpa HOM05D002093 ORTHO05D003877 3.5e-07 58.5 45 62.2
Sabra07G0038900 Salix brachista HOM05D002093 ORTHO05D003877 3.5e-07 58.5 45 62.2
Sed0000549 Sechium edule HOM05D002093 ORTHO05D003877 3.5e-07 58.5 46 63.0
TWI09G1584 Tripterygium wilfordii HOM05D002093 ORTHO05D003877 3.5e-07 58.5 60 51.7
vmacro05338 Vaccinium macrocarpon HOM05D002093 ORTHO05D003877 3.5e-07 58.5 60 51.7
Cfa004024 Carpinus fangiana HOM05D002093 ORTHO05D003877 4.6e-07 58.2 45 62.2
CiPaw.01G018000 Carya illinoinensis HOM05D002093 ORTHO05D003877 4.6e-07 58.2 60 51.7
Haze_15397 Corylus avellana HOM05D002093 ORTHO05D003877 4.6e-07 58.2 45 62.2
Rhsim10G0117500 Rhododendron simsii HOM05D002093 ORTHO05D003877 4.6e-07 58.2 46 58.7
Thecc.01G056400 Theobroma cacao HOM05D002093 ORTHO05D003877 4.6e-07 58.2 60 53.3
Gohir.D11G199200 Gossypium hirsutum HOM05D002093 ORTHO05D003877 6.0e-07 57.8 45 62.2
Gorai.007G213400 Gossypium raimondii HOM05D002093 ORTHO05D003877 6.0e-07 57.8 45 62.2
MBI03_g13471_MAGBIO Magnolia biondii HOM05D002093 ORTHO05D003877 6.0e-07 57.8 46 60.9
Manes.13G124200 Manihot esculenta HOM05D002093 ORTHO05D003877 6.0e-07 57.8 60 51.7
Peaxi162Scf00450g00035 Petunia axillaris HOM05D002093 ORTHO05D003877 6.0e-07 57.8 60 55.0
Cpa.g.sc55.147 Carica papaya HOM05D002093 ORTHO05D003877 7.8e-07 57.4 46 58.7
Dinv39847 Davidia involucrata HOM05D002093 ORTHO05D003877 7.8e-07 57.4 60 51.7
Manes.12G106900 Manihot esculenta HOM05D002093 ORTHO05D003877 7.8e-07 57.4 60 51.7
Psat2g167200 Pisum sativum HOM05D002093 ORTHO05D003877 7.8e-07 57.4 61 49.2
QL06p041362 Quercus lobata HOM05D002093 ORTHO05D003877 7.8e-07 57.4 60 51.7
TAR625G0453 Trochodendron aralioides HOM05D002093 ORTHO05D003877 7.8e-07 57.4 47 57.4
Atru.chr3.326 Acer truncatum HOM05D002093 ORTHO05D003877 1.0e-06 57.0 46 58.7
Actinidia36495 Actinidia chinensis HOM05D002093 ORTHO05D003877 1.0e-06 57.0 60 51.7
Potri.005G138300 Populus trichocarpa HOM05D002093 ORTHO05D003877 1.3e-06 56.6 45 60.0
TPR.G19073 Trifolium pratense HOM05D002093 ORTHO05D003877 1.3e-06 56.6 47 61.7
TAR381G1348 Trochodendron aralioides HOM05D002093 ORTHO05D003877 1.3e-06 56.6 46 60.9
Actinidia16482 Actinidia chinensis HOM05D002093 ORTHO05D003877 1.7e-06 56.2 60 51.7
A07p16910 Brassica napus HOM05D002093 ORTHO05D003877 2.3e-06 55.8 45 60.0
BraA07t29417Z Brassica rapa HOM05D002093 ORTHO05D003877 2.3e-06 55.8 45 60.0
Psat0s1281g0040 Pisum sativum HOM05D002093 ORTHO05D003877 2.3e-06 55.8 47 61.7
SalBow1G1545 Salvia bowleyana HOM05D002093 ORTHO05D003877 2.3e-06 55.8 60 48.3
THA.LOC104827141 Tarenaya hassleriana HOM05D002093 ORTHO05D003877 3.0e-06 55.5 58 53.4
TAR628G1162 Trochodendron aralioides HOM05D002093 ORTHO05D003877 3.0e-06 55.5 60 50.0
AL5G30460 Arabidopsis lyrata HOM05D002093 ORTHO05D003877 3.9e-06 55.1 60 50.0
AT3G50340 Arabidopsis thaliana HOM05D002093 ORTHO05D003877 3.9e-06 55.1 60 50.0
Carub.0005s1665 Capsella rubella HOM05D002093 ORTHO05D003877 3.9e-06 55.1 60 50.0
Aa31LG4G18570 Aethionema arabicum HOM05D002093 ORTHO05D003877 5.1e-06 54.7 60 50.0
Lj7A69T48 Lonicera japonica HOM05D002093 ORTHO05D003877 5.1e-06 54.7 46 58.7
Nitab4.5_0002016g0100 Nicotiana tabacum HOM05D002093 ORTHO05D003877 5.1e-06 54.7 61 55.7
Nitab4.5_0002440g0020 Nicotiana tabacum HOM05D002093 ORTHO05D003877 5.1e-06 54.7 61 55.7
PGR004G1935 Punica granatum HOM05D002093 ORTHO05D003877 5.1e-06 54.7 60 46.7
Lalb_Chr09g0323191 Lupinus albus HOM05D002093 ORTHO05D003877 6.6e-06 54.3 47 57.4
PSO541G0340 Papaver somniferum HOM05D002093 ORTHO05D003877 6.6e-06 54.3 46 56.5
PSO675G7228 Papaver somniferum HOM05D002093 ORTHO05D003877 6.6e-06 54.3 46 56.5
PGR102G1838 Punica granatum HOM05D002093 ORTHO05D003877 6.6e-06 54.3 44 59.1
MSTRG.23745 Avicennia marina HOM05D002093 ORTHO05D003877 8.6e-06 53.9 44 63.6
MSTRG.3425 Avicennia marina HOM05D002093 ORTHO05D003877 8.6e-06 53.9 53 52.8
CARHR159800 Cardamine hirsuta HOM05D002093 ORTHO05D003877 8.6e-06 53.9 60 48.3
Ca_22163_v3 Cicer arietinum L. HOM05D002093 ORTHO05D003877 8.6e-06 53.9 47 57.4
Duzib187G1344 Durio zibethinus HOM05D002093 ORTHO05D003877 8.6e-06 53.9 60 50.0


User provided reference genes

Program Settings