Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 9.7e-112 406.8 195 100.0
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 7.5e-72 274.2 191 71.7
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 3.5e-53 212.2 197 58.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 4.6e-53 211.8 196 62.8
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 9.2e-46 187.6 201 54.7
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.0e-44 184.1 200 52.0
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.9e-43 179.9 204 52.0
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 9.5e-43 177.6 206 51.5
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.4e-40 169.1 196 50.0
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.3e-39 167.2 192 50.5
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.9e-39 166.0 196 49.5
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.8e-39 165.6 193 50.3
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 4.9e-39 165.2 198 49.0
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.1e-38 164.1 199 47.7
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.1e-38 164.1 200 46.5
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 7.1e-38 161.4 204 50.0
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.2e-37 160.6 202 48.0
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 2.1e-37 159.8 205 47.3
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 2.7e-37 159.5 202 48.0
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 4.6e-37 158.7 202 48.0
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 7.8e-37 157.9 196 48.5
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.3e-36 157.1 221 43.0
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 3.0e-36 156.0 201 46.8
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 6.6e-36 154.8 203 47.3
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 6.6e-36 154.8 203 47.3
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 6.6e-36 154.8 201 45.8
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.1e-35 154.1 201 43.8
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.1e-35 154.1 201 46.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 3.3e-35 152.5 132 57.6
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 3.3e-35 152.5 201 46.3
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.6e-35 151.8 224 42.0
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 8.1e-34 147.9 199 43.2
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 8.1e-34 147.9 205 45.9
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 1.1e-33 147.5 211 44.5
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.1e-33 147.5 201 43.3
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.4e-33 147.1 203 44.8
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.4e-33 147.1 208 45.7
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.8e-33 146.7 203 44.8
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 5.2e-33 145.2 207 44.0
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 5.2e-33 145.2 137 55.5
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 6.9e-33 144.8 202 43.6
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 2.6e-32 142.9 206 42.2
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.6e-32 142.9 217 41.0
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 3.4e-32 142.5 206 44.7
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.4e-32 142.1 195 41.5
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 5.8e-32 141.7 203 44.3
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 9.9e-32 141.0 199 43.2
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 9.9e-32 141.0 198 43.9
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.7e-31 140.2 197 43.1
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.2e-31 139.8 197 41.6
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.2e-31 139.8 206 43.2
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.9e-31 139.4 213 42.7
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.8e-31 139.0 195 42.6
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.8e-31 139.0 210 42.4
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 3.8e-31 139.0 202 43.6
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 3.8e-31 139.0 209 43.1
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 4.9e-31 138.7 204 43.1
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 6.4e-31 138.3 218 40.8
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 1.1e-30 137.5 200 42.5
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.4e-30 137.1 195 42.6
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 1.9e-30 136.7 206 42.2
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 2.4e-30 136.3 209 42.6
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 2.4e-30 136.3 209 42.6
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 3.2e-30 136.0 207 43.0
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 4.2e-30 135.6 195 41.0
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 4.2e-30 135.6 205 41.5
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 7.1e-30 134.8 170 46.5
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 9.3e-30 134.4 204 42.6
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 9.3e-30 134.4 210 41.0
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 9.3e-30 134.4 188 44.7
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 9.3e-30 134.4 206 41.7
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.6e-29 133.7 204 44.1
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.6e-29 133.7 200 44.5
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.1e-29 133.3 197 44.7
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 2.1e-29 133.3 207 42.5
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 6.0e-29 131.7 195 42.6
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 7.8e-29 131.3 202 41.6
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 7.8e-29 131.3 213 41.8
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 7.8e-29 131.3 203 42.9
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.0e-28 131.0 204 43.6
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 1.3e-28 130.6 193 38.9
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.3e-28 130.6 207 44.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 3.0e-28 129.4 209 39.2
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 3.9e-28 129.0 205 43.4
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 5.1e-28 128.6 205 42.9
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 5.1e-28 128.6 204 39.2
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 5.1e-28 128.6 211 39.8
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 6.6e-28 128.3 204 42.6
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 8.7e-28 127.9 203 41.9
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 8.7e-28 127.9 204 38.7
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 1.1e-27 127.5 142 48.6
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.5e-27 127.1 210 41.4
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.5e-27 127.1 212 40.6
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.9e-27 126.7 198 45.5
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 2.5e-27 126.3 118 51.7
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 3.3e-27 125.9 200 41.5
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.3e-27 125.9 194 41.2
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.3e-27 125.9 193 43.5
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 7.3e-27 124.8 181 44.2
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 9.6e-27 124.4 204 43.1
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.3e-26 124.0 210 39.5
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 2.1e-26 123.2 201 38.3
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 2.1e-26 123.2 214 40.7
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 2.8e-26 122.9 198 38.9
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 2.8e-26 122.9 205 38.0
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.8e-26 122.9 112 52.7
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 2.8e-26 122.9 112 50.0
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 3.6e-26 122.5 134 46.3
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 6.2e-26 121.7 161 44.7
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 8.1e-26 121.3 193 38.3
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.1e-25 120.9 177 41.8
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.4e-25 120.6 137 51.8
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 3.1e-25 119.4 198 41.9
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 3.1e-25 119.4 208 39.9
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 4.0e-25 119.0 204 37.3
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 5.3e-25 118.6 193 38.3
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 9.0e-25 117.9 197 37.1
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.5e-24 117.1 167 41.9
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.7e-23 113.6 112 53.6
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.9e-23 112.8 193 37.3
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.9e-23 112.8 112 49.1
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.9e-23 112.8 224 36.6
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 3.8e-23 112.5 193 35.8
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 8.4e-23 111.3 219 37.9
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 1.1e-22 110.9 114 48.2
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.4e-22 110.5 240 34.6
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 2.4e-22 109.8 150 43.3
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 2.4e-22 109.8 193 37.3
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 3.2e-22 109.4 117 45.3
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 3.2e-22 109.4 117 45.3
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.4e-22 108.6 232 35.3
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 5.4e-22 108.6 232 35.3
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 9.3e-22 107.8 131 45.0
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.2e-21 107.5 205 34.6
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 2.1e-21 106.7 114 46.5
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 6.0e-21 105.1 198 37.4
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.0e-20 104.4 192 39.1
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.0e-20 104.4 192 39.1
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.3e-20 104.0 112 44.6
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 2.3e-20 103.2 150 38.0
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.0e-20 102.8 140 42.1
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.0e-20 102.8 102 49.0
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 3.0e-20 102.8 117 47.0
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 3.9e-20 102.4 103 49.5
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.1e-19 100.9 96 50.0
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.1e-19 100.9 186 32.8
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.3e-18 97.4 114 43.9
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.3e-18 97.4 114 43.9
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.3e-18 97.4 114 43.9
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.8e-18 96.3 219 34.2
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.4e-17 93.2 118 42.4
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.5e-16 90.5 206 35.0
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 2.6e-16 89.7 90 48.9
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 8.4e-15 84.7 107 42.1
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 2.4e-14 83.2 118 39.8
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 4.2e-14 82.4 111 39.6
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 7.1e-14 81.6 177 31.1
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 9.3e-14 81.3 116 37.1
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 3.5e-13 79.3 133 33.8
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.0e-13 78.6 101 39.6
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 7.9e-13 78.2 115 40.9
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.3e-12 76.6 103 38.8
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.3e-10 70.9 124 37.9
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 1.5e-08 63.9 148 32.4
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 6.5e-07 58.5 83 31.3


User provided reference genes

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