Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12844 Striga asiatica HOM05D012176 ORTHO05D014468 5.6e-150 534.3 270 100.0
Migut.J00709 Erythranthe guttata HOM05D012176 ORTHO05D002052 1.0e-50 204.5 296 43.2
MSTRG.5900 Avicennia marina HOM05D012176 ORTHO05D014468 1.8e-44 183.7 255 43.1
MSTRG.19312 Avicennia marina HOM05D012176 ORTHO05D014468 1.3e-34 151.0 267 37.1
Migut.B00865 Erythranthe guttata HOM05D012176 ORTHO05D014468 3.9e-34 149.4 192 45.3
Oeu050407.1 Olea europaea HOM05D012176 ORTHO05D014468 6.4e-29 132.1 241 35.7
Oeu055534.1 Olea europaea HOM05D012176 ORTHO05D014468 1.7e-26 124.0 178 39.9
Rhsim03G0065900 Rhododendron simsii HOM05D008136 ORTHO05D002052 1.1e-23 114.8 271 28.4
QL07p036916 Quercus lobata HOM05D008136 ORTHO05D002052 1.3e-21 107.8 256 29.3
Dinv31752 Davidia involucrata HOM05D002687 ORTHO05D022209 2.4e-20 103.6 194 30.4
Nitab4.5_0002958g0020 Nicotiana tabacum HOM05D012176 ORTHO05D014468 3.5e-19 99.8 258 27.9
Nitab4.5_0000020g0110 Nicotiana tabacum HOM05D012176 ORTHO05D014468 1.7e-18 97.4 261 28.4
QL01p011302 Quercus lobata HOM05D002687 ORTHO05D002052 3.9e-18 96.3 237 27.8
TAR633G0472 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.6e-18 95.5 278 27.0
TAR633G1301 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.5e-17 94.4 272 29.8
Cc06_g06470 Coffea canephora HOM05D022101 ORTHO05D022209 3.3e-17 93.2 232 27.6
Potri.006G204000 Populus trichocarpa HOM05D008136 ORTHO05D002052 7.3e-17 92.0 199 30.7
Manes.08G032700 Manihot esculenta HOM05D008136 ORTHO05D002052 1.2e-16 91.3 244 28.3
Duzib093G0447 Durio zibethinus HOM05D008136 ORTHO05D002052 2.8e-16 90.1 234 29.9
Ca_01639_v3 Cicer arietinum L. HOM05D002687 ORTHO05D002052 3.6e-16 89.7 238 26.9
Actinidia32046 Actinidia chinensis HOM05D000182 ORTHO05D000112 6.2e-16 89.0 209 31.1
TAR623G0011 Trochodendron aralioides HOM05D002687 ORTHO05D002052 6.2e-16 89.0 262 27.5
Nn2g14281 Nelumbo nucifera HOM05D002687 ORTHO05D002052 8.1e-16 88.6 258 26.7
SGA_v2.0_scaffold35G14009 Striga asiatica HOM05D012176 ORTHO05D014468 1.1e-15 88.2 166 38.0
TAR369G0448 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.4e-15 87.8 253 26.1
Oeu052622.2 Olea europaea HOM05D022101 ORTHO05D022209 2.3e-15 87.0 229 27.1
Sabra16G0125800 Salix brachista HOM05D002687 ORTHO05D002052 3.1e-15 86.7 245 28.2
PGSC0003DMG400016421 Solanum tuberosum HOM05D012176 ORTHO05D014468 3.1e-15 86.7 252 29.0
Potri.001G218300 Populus trichocarpa HOM05D002687 ORTHO05D002052 4.0e-15 86.3 237 27.0
BcaC07g39611 Brassica carinata HOM05D008136 ORTHO05D002052 2.0e-14 84.0 266 25.9
C08p27700 Brassica napus HOM05D008136 ORTHO05D002052 2.0e-14 84.0 266 25.9
BolC8t50390H Brassica oleracea HOM05D008136 ORTHO05D002052 2.0e-14 84.0 266 25.9
MD00G1129000 Malus domestica HOM05D002687 ORTHO05D002052 4.4e-14 82.8 228 25.4
Sabra06G0157200 Salix brachista HOM05D008136 ORTHO05D002052 4.4e-14 82.8 174 30.5
CiPaw.13G131000 Carya illinoinensis HOM05D002687 ORTHO05D002052 5.8e-14 82.4 244 28.3
Nn6g34711 Nelumbo nucifera HOM05D002687 ORTHO05D002052 7.6e-14 82.0 255 28.6
Manes.11G165500 Manihot esculenta HOM05D002687 ORTHO05D002052 9.9e-14 81.6 236 25.8
CANSAT54G2775 Cannabis sativa HOM05D002687 ORTHO05D002052 1.3e-13 81.3 243 23.9
TPR.G4667 Trifolium pratense HOM05D002687 ORTHO05D002052 1.3e-13 81.3 197 26.9
DCAR_010643 Daucus carota HOM05D002687 ORTHO05D002052 1.7e-13 80.9 241 24.5
Eucgr.J00543 Eucalyptus grandis HOM05D002687 ORTHO05D002052 1.7e-13 80.9 248 28.2
A09p45540 Brassica napus HOM05D008136 ORTHO05D002052 2.2e-13 80.5 260 26.5
BraA09t40016Z Brassica rapa HOM05D008136 ORTHO05D002052 2.2e-13 80.5 260 26.5
CiPaw.14G096100 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.2e-13 80.5 238 28.6
MD03G1153500 Malus domestica HOM05D002687 ORTHO05D002052 2.2e-13 80.5 228 25.4
Medtr2g087000 Medicago truncatula HOM05D002687 ORTHO05D002052 2.2e-13 80.5 232 25.4
TAR623G1724 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.2e-13 80.5 159 28.3
Nn6g34716 Nelumbo nucifera HOM05D002687 ORTHO05D002052 4.9e-13 79.3 254 26.0
Psat5g260320 Pisum sativum HOM05D002687 ORTHO05D002052 8.4e-13 78.6 184 24.5
Oeu048843.1 Olea europaea HOM05D002687 ORTHO05D002052 1.1e-12 78.2 248 27.0
CiPaw.14G095600 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.4e-12 77.8 196 25.0
CiPaw.14G095800 Carya illinoinensis HOM05D002687 ORTHO05D002052 1.4e-12 77.8 196 25.0
CARHR162230 Cardamine hirsuta HOM05D008136 ORTHO05D002052 1.9e-12 77.4 234 25.6
Sed0011968 Sechium edule HOM05D008136 ORTHO05D002052 1.9e-12 77.4 252 25.4
CiPaw.14G095400 Carya illinoinensis HOM05D002687 ORTHO05D002052 2.4e-12 77.0 196 26.0
AT3G52460 Arabidopsis thaliana HOM05D008136 ORTHO05D002052 7.1e-12 75.5 257 24.9
MSTRG.21015 Avicennia marina HOM05D002687 ORTHO05D002052 7.1e-12 75.5 257 28.0
BcaB01g00366 Brassica carinata HOM05D008136 ORTHO05D002052 7.1e-12 75.5 266 24.8
MELO3C009533.2 Cucumis melo HOM05D008136 ORTHO05D002052 7.1e-12 75.5 176 27.8
PSO339G2661 Papaver somniferum HOM05D002687 ORTHO05D002052 1.2e-11 74.7 261 24.5
PSO384G1068 Papaver somniferum HOM05D002687 ORTHO05D002052 1.2e-11 74.7 280 24.6
PGSC0003DMG400016432 Solanum tuberosum HOM05D022101 ORTHO05D022209 1.2e-11 74.7 229 27.1
Prupe.6G142400 Prunus persica HOM05D002687 ORTHO05D002052 1.6e-11 74.3 228 25.0
Eucgr.A02595 Eucalyptus grandis HOM05D008136 ORTHO05D002052 2.1e-11 73.9 232 26.3
RcHm_v2.0_Chr5g0048091 Rosa chinensis HOM05D002687 ORTHO05D002052 2.1e-11 73.9 240 26.2
CsaV3_3G037890 Cucumis sativus L. HOM05D008136 ORTHO05D002052 3.5e-11 73.2 176 26.7
TWI79G0900 Tripterygium wilfordii HOM05D002687 ORTHO05D002052 3.5e-11 73.2 239 26.4
TPR.G35558 Trifolium pratense HOM05D008136 ORTHO05D002052 4.6e-11 72.8 253 24.9
TWI74G0144 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 4.6e-11 72.8 198 28.3
Atru.chr8.1380 Acer truncatum HOM05D008136 ORTHO05D002052 6.0e-11 72.4 249 24.5
CiPaw.14G095900 Carya illinoinensis HOM05D002687 ORTHO05D002052 7.8e-11 72.0 195 25.6
ATR0772G197 Amborella trichopoda HOM05D002687 ORTHO05D002052 1.0e-10 71.6 178 25.8
Phvul.005G120800 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 1.0e-10 71.6 243 23.9
Sabra09G0012300 Salix brachista HOM05D002687 ORTHO05D002052 1.0e-10 71.6 232 23.7
TPR.G4231 Trifolium pratense HOM05D002687 ORTHO05D002052 1.0e-10 71.6 186 24.7
Thecc.09G275200 Theobroma cacao HOM05D002687 ORTHO05D002052 1.3e-10 71.2 178 27.5
CANSAT64G0025 Cannabis sativa HOM05D008136 ORTHO05D002052 1.7e-10 70.9 164 26.8
Medtr4g051652 Medicago truncatula HOM05D002687 ORTHO05D002052 1.7e-10 70.9 182 24.7
Atru.chr3.3136 Acer truncatum HOM05D002687 ORTHO05D002052 2.3e-10 70.5 235 24.3
FAN16G1005 Fragaria x ananassa HOM05D002687 ORTHO05D002052 2.3e-10 70.5 245 24.9
MBI01_g04539_MAGBIO Magnolia biondii HOM05D002687 ORTHO05D002052 2.3e-10 70.5 255 25.5
RcHm_v2.0_Chr3g0475711 Rosa chinensis HOM05D002687 ORTHO05D002052 2.3e-10 70.5 256 26.2
Cpa.g.sc1142.1 Carica papaya HOM05D002687 ORTHO05D002052 3.9e-10 69.7 179 28.5
Lalb_Chr14g0376011 Lupinus albus HOM05D002687 ORTHO05D002052 3.9e-10 69.7 235 24.7
Sopen06g030470 Solanum pennellii HOM05D002687 ORTHO05D002052 3.9e-10 69.7 229 24.5
Cpa.g.sc104.46 Carica papaya HOM05D002687 ORTHO05D002052 5.1e-10 69.3 258 24.8
Solyc11g068900.1 Solanum lycopersicum HOM05D002687 ORTHO05D002052 5.1e-10 69.3 235 24.7
Cfa009948 Carpinus fangiana HOM05D002687 ORTHO05D002052 6.6e-10 68.9 240 25.4
Sopen11g027610 Solanum pennellii HOM05D002687 ORTHO05D002052 6.6e-10 68.9 248 23.4
PGSC0003DMG400019632 Solanum tuberosum HOM05D002687 ORTHO05D002052 6.6e-10 68.9 248 23.4
THA.LOC104823630 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 6.6e-10 68.9 241 23.7
Aqoxy1G00678 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 8.6e-10 68.6 238 26.9
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 1.1e-09 68.2 250 22.4
Sopen01g003200 Solanum pennellii HOM05D022101 ORTHO05D022209 1.1e-09 68.2 204 25.0
TAR633G0261 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.1e-09 68.2 230 25.2
Actinidia07275 Actinidia chinensis HOM05D002687 ORTHO05D002052 1.5e-09 67.8 167 25.1
Ciclev10029176m.g Citrus clementina HOM05D002687 ORTHO05D002052 1.5e-09 67.8 236 23.7
Lj3g0009280 Lotus japonicus HOM05D002687 ORTHO05D002052 1.9e-09 67.4 232 22.8
PGSC0003DMG400005897 Solanum tuberosum HOM05D002687 ORTHO05D002052 1.9e-09 67.4 235 23.0
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-09 67.4 228 25.0
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.9e-09 67.4 228 25.0
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 2.5e-09 67.0 242 22.7
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 2.5e-09 67.0 242 22.7
Nitab4.5_0000893g0110 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.5e-09 67.0 183 24.6
PGR004G1626 Punica granatum HOM05D008136 ORTHO05D002052 2.5e-09 67.0 234 22.2
unitig_8.g3658 Utricularia gibba HOM05D002687 ORTHO05D002052 2.5e-09 67.0 223 27.8
Lj1C262G4 Lonicera japonica HOM05D002687 ORTHO05D002052 3.3e-09 66.6 175 26.3
Carub.0001s0701 Capsella rubella HOM05D002687 ORTHO05D002052 4.3e-09 66.2 264 26.1
COL.COLO4_32398 Corchorus olitorius HOM05D010991 ORTHO05D010825 5.6e-09 65.9 185 23.8
HanXRQChr14g0432161 Helianthus annuus HOM05D002687 ORTHO05D002052 7.3e-09 65.5 242 23.1
Solyc06g074050.3 Solanum lycopersicum HOM05D002687 ORTHO05D002052 9.6e-09 65.1 183 23.0
FvH4_6g20177 Fragaria vesca HOM05D002687 ORTHO05D002052 1.2e-08 64.7 179 24.0
Gohir.D09G097800 Gossypium hirsutum HOM05D002687 ORTHO05D002052 1.2e-08 64.7 195 23.6
Gorai.006G114600 Gossypium raimondii HOM05D002687 ORTHO05D002052 1.2e-08 64.7 195 23.6
PGR119G0132 Punica granatum HOM05D002687 ORTHO05D002052 1.2e-08 64.7 177 27.7
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.2e-08 64.7 186 24.7
CAN.G1463.1 Capsicum annuum HOM05D002687 ORTHO05D002065 1.6e-08 64.3 181 24.9
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 1.6e-08 64.3 186 23.7
Lsat_1_v5_gn_3_114060 Lactuca sativa HOM05D002687 ORTHO05D002052 1.6e-08 64.3 249 21.3
TWI53G0569 Tripterygium wilfordii HOM05D008136 ORTHO05D002052 1.6e-08 64.3 236 24.2
EL10Ac7g16313 Beta vulgaris HOM05D002687 ORTHO05D002052 2.1e-08 63.9 164 23.8
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.1e-08 63.9 239 23.0
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.1e-08 63.9 239 23.4
COL.COLO4_22662 Corchorus olitorius HOM05D002687 ORTHO05D002052 2.1e-08 63.9 199 23.1
Eucgr.B03820 Eucalyptus grandis HOM05D002687 ORTHO05D002052 2.1e-08 63.9 180 25.0
FAN14G3199 Fragaria x ananassa HOM05D029328 ORTHO05D002052 2.1e-08 63.9 166 24.7
Nitab4.5_0000158g0010 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.1e-08 63.9 183 24.0
BcaB06g28135 Brassica carinata HOM05D002687 ORTHO05D002052 2.8e-08 63.5 244 24.6
BraA04t17653Z Brassica rapa HOM05D002687 ORTHO05D002052 2.8e-08 63.5 238 24.8
Aqoxy1G00677 Aquilegia oxysepala HOM05D002687 ORTHO05D002052 3.6e-08 63.2 250 24.0
A03p26690 Brassica napus HOM05D002687 ORTHO05D002052 3.6e-08 63.2 225 24.9
Ca_09051_v3 Cicer arietinum L. HOM05D008136 ORTHO05D002052 3.6e-08 63.2 200 24.5
Phvul.007G268400 Phaseolus vulgaris HOM05D008136 ORTHO05D002052 4.7e-08 62.8 265 23.0
PGSC0003DMG400028150 Solanum tuberosum HOM05D024778 ORTHO05D025937 4.7e-08 62.8 240 26.7
THA.LOC104825213 Tarenaya hassleriana HOM05D008136 ORTHO05D002052 4.7e-08 62.8 278 23.7
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 6.2e-08 62.4 247 24.3
THA.LOC104826444 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 6.2e-08 62.4 239 27.2
BcaC02g08259 Brassica carinata HOM05D002687 ORTHO05D002052 8.1e-08 62.0 238 23.9
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 8.1e-08 62.0 236 23.3
C04p56620 Brassica napus HOM05D002687 ORTHO05D002052 8.1e-08 62.0 238 23.9
BolC4t27189H Brassica oleracea HOM05D002687 ORTHO05D002052 8.1e-08 62.0 238 23.9
BraA07t29528Z Brassica rapa HOM05D002687 ORTHO05D002052 8.1e-08 62.0 236 23.3
Cfa016686 Carpinus fangiana HOM05D002687 ORTHO05D002052 8.1e-08 62.0 256 25.4
CDE04G2921 Ceratophyllum demersum HOM05D002687 ORTHO05D002052 1.4e-07 61.2 251 23.1
DCAR_003063 Daucus carota HOM05D008136 ORTHO05D014468 1.4e-07 61.2 233 23.2
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 1.4e-07 61.2 253 23.3
BraA03t11881Z Brassica rapa HOM05D002687 ORTHO05D002052 1.8e-07 60.8 225 25.3
Dinv31751 Davidia involucrata HOM05D002687 ORTHO05D002052 1.8e-07 60.8 131 29.0
Nitab4.5_0000657g0070 Nicotiana tabacum HOM05D002687 ORTHO05D002052 1.8e-07 60.8 250 20.8
TAR636G1837 Trochodendron aralioides HOM05D002687 ORTHO05D002052 1.8e-07 60.8 176 24.4
HanXRQChr13g0420231 Helianthus annuus HOM05D002687 ORTHO05D002052 2.4e-07 60.5 190 22.6
Nitab4.5_0000380g0140 Nicotiana tabacum HOM05D002687 ORTHO05D002052 2.4e-07 60.5 251 19.5
A04p20800 Brassica napus HOM05D002687 ORTHO05D002052 3.1e-07 60.1 227 25.6
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 3.1e-07 60.1 243 23.0
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 3.1e-07 60.1 235 24.7
BolC3t15541H Brassica oleracea HOM05D002687 ORTHO05D002052 4.0e-07 59.7 238 25.6
FAN04G3011 Fragaria x ananassa HOM05D010052 ORTHO05D010666 4.0e-07 59.7 191 24.1
THA.LOC104800513 Tarenaya hassleriana HOM05D002687 ORTHO05D002052 4.0e-07 59.7 180 24.4
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 5.2e-07 59.3 235 20.4
Prupe.7G096700 Prunus persica HOM05D010052 ORTHO05D010666 6.8e-07 58.9 156 25.6
BolC4t23929H Brassica oleracea HOM05D002687 ORTHO05D002052 8.9e-07 58.5 203 23.6
Phvul.011G098100 Phaseolus vulgaris HOM05D002687 ORTHO05D002052 1.2e-06 58.2 184 25.0
BcaC02g10865 Brassica carinata HOM05D002687 ORTHO05D002052 1.5e-06 57.8 234 23.1
C04p24310 Brassica napus HOM05D002687 ORTHO05D002052 1.5e-06 57.8 234 23.1
QL01p011200 Quercus lobata HOM05D002687 ORTHO05D002052 1.5e-06 57.8 205 22.9
RcHm_v2.0_Chr7g0211331 Rosa chinensis HOM05D010052 ORTHO05D010666 1.5e-06 57.8 190 24.7
CAN.G574.24 Capsicum annuum HOM05D012176 ORTHO05D014468 2.0e-06 57.4 146 28.8
FvH4_3g40821 Fragaria vesca HOM05D010052 ORTHO05D010666 2.6e-06 57.0 181 26.0
FAN11G3829 Fragaria x ananassa HOM05D010052 ORTHO05D010666 2.6e-06 57.0 181 26.0
Glyma.12G093700 Glycine max HOM05D002687 ORTHO05D002052 2.6e-06 57.0 182 26.9
TAR636G0890 Trochodendron aralioides HOM05D002687 ORTHO05D002052 2.6e-06 57.0 176 23.3
MELO3C025576.2 Cucumis melo HOM05D002687 ORTHO05D034712 3.4e-06 56.6 195 23.6
unitig_899.g15378 Utricularia gibba HOM05D002687 ORTHO05D002052 3.4e-06 56.6 179 26.3
Medtr2g087080 Medicago truncatula HOM05D002687 ORTHO05D002052 4.4e-06 56.2 188 22.3
CDE12G0475 Ceratophyllum demersum HOM05D000139 ORTHO05D000103 5.8e-06 55.8 182 22.5
Ciclev10012623m.g Citrus clementina HOM05D002687 ORTHO05D002052 5.8e-06 55.8 269 24.2
Ciclev10013405m.g Citrus clementina HOM05D008136 ORTHO05D002052 5.8e-06 55.8 263 24.3
FAN18G4184 Fragaria x ananassa HOM05D003158 ORTHO05D003560 5.8e-06 55.8 175 22.9
Thecc.01G085100 Theobroma cacao HOM05D015120 ORTHO05D010666 5.8e-06 55.8 161 23.0
BcaC01g04930 Brassica carinata HOM05D002687 ORTHO05D002052 7.6e-06 55.5 182 25.3
C03p31980 Brassica napus HOM05D002687 ORTHO05D002052 7.6e-06 55.5 182 25.3
RcHm_v2.0_Chr7g0211341 Rosa chinensis HOM05D010052 ORTHO05D010666 7.6e-06 55.5 149 27.5
FAN18G3409 Fragaria x ananassa HOM05D010052 ORTHO05D010666 9.9e-06 55.1 179 22.3


User provided reference genes

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