Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 0.0e+00 1235.7 627 100.0
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.7e-272 941.8 627 79.6
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 2.8e-221 772.3 635 67.4
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.5e-206 723.4 634 63.4
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.0e-206 723.0 634 63.4
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 1.3e-205 720.3 630 64.0
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 4.1e-180 635.6 689 55.3
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 8.3e-165 584.7 629 55.2
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 6.0e-163 578.6 646 53.4
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 2.1e-152 543.5 643 51.2
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.8e-151 538.5 669 49.2
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 2.2e-149 533.5 641 50.4
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 2.4e-148 530.0 641 50.9
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.2e-148 529.6 644 50.5
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 1.2e-147 527.7 649 50.5
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 9.6e-145 518.1 641 49.8
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 2.1e-144 516.9 644 48.1
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 2.6e-142 510.0 646 49.8
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.0e-138 496.5 647 48.7
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 3.9e-138 496.1 648 49.2
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 9.6e-137 491.5 647 48.1
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 9.6e-137 491.5 644 47.4
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 3.1e-135 486.5 637 48.2
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 9.0e-135 485.0 639 49.3
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.3e-133 481.1 655 46.4
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.4e-133 478.8 639 48.5
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 2.4e-132 476.9 645 47.0
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 3.2e-132 476.5 644 46.6
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 4.2e-132 476.1 637 47.4
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 2.7e-131 473.4 643 47.6
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.7e-131 473.4 644 47.0
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.9e-131 471.9 644 47.0
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 3.0e-130 469.9 642 46.4
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 5.6e-129 465.7 645 46.2
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.6e-129 465.7 643 46.5
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 5.6e-129 465.7 637 46.8
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 2.1e-128 463.8 643 47.1
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.7e-128 463.0 644 45.5
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 3.7e-128 463.0 643 47.0
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 2.4e-127 460.3 652 45.7
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.5e-126 457.6 623 47.8
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 1.5e-126 457.6 638 46.4
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 4.5e-126 456.1 667 43.5
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.9e-125 453.4 646 45.4
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 8.4e-125 451.8 642 44.4
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.1e-124 451.4 643 44.3
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.1e-123 447.2 642 43.5
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 2.1e-123 447.2 640 43.3
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 2.7e-123 446.8 640 45.9
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 3.5e-123 446.4 643 44.2
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 6.0e-123 445.7 631 47.1
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.8e-122 444.1 643 45.9
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 5.1e-122 442.6 637 44.9
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 6.7e-122 442.2 669 43.2
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 3.3e-121 439.9 640 45.5
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 7.4e-121 438.7 653 44.7
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 1.3e-120 438.0 652 45.1
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.1e-120 437.2 653 45.6
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 3.7e-120 436.4 660 44.2
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 8.2e-120 435.3 644 43.9
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 1.1e-119 434.9 645 44.3
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 4.1e-119 433.0 649 43.0
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 5.3e-119 432.6 647 42.8
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 6.9e-119 432.2 635 44.7
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 7.6e-118 428.7 647 43.0
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 2.9e-117 426.8 630 43.5
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 8.4e-117 425.2 623 45.7
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.4e-116 424.5 650 43.4
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 3.2e-116 423.3 638 41.7
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 1.6e-115 421.0 638 43.6
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.6e-115 421.0 639 42.6
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 3.5e-115 419.9 612 44.6
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 6.1e-115 419.1 698 41.5
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 2.3e-114 417.2 606 45.2
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 2.3e-114 417.2 617 44.1
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 3.0e-114 416.8 639 44.0
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.9e-113 414.1 601 43.3
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 3.3e-113 413.3 613 43.2
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 4.3e-113 412.9 646 43.7
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 9.7e-113 411.8 640 41.9
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 2.2e-112 410.6 648 42.3
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.8e-112 410.2 652 42.5
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 4.8e-112 409.5 644 42.5
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.1e-111 408.3 626 42.2
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.0e-110 404.1 629 42.4
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.0e-110 404.1 635 42.7
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 5.9e-110 402.5 646 42.7
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 2.2e-109 400.6 513 51.1
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 5.0e-109 399.4 624 42.9
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 6.5e-109 399.1 651 41.8
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 6.5e-109 399.1 609 42.2
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 6.5e-109 399.1 634 43.4
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.0e-106 391.7 683 40.1
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.8e-106 391.0 683 40.3
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.9e-106 389.8 633 41.2
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 1.1e-105 388.3 607 41.2
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 1.1e-105 388.3 609 40.9
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.5e-105 387.9 663 39.5
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 4.3e-105 386.3 620 43.2
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 5.7e-105 386.0 608 41.0
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 5.7e-105 386.0 626 42.5
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 2.8e-104 383.6 626 39.9
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 4.8e-104 382.9 396 55.3
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 1.1e-103 381.7 608 41.6
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 2.4e-103 380.6 621 40.1
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 3.1e-103 380.2 623 39.3
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 6.9e-103 379.0 623 39.3
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 9.1e-103 378.6 692 37.9
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 9.1e-103 378.6 597 43.2
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.0e-101 375.2 637 39.7
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 1.4e-100 371.3 618 40.1
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 1.9e-100 370.9 621 39.1
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 4.2e-100 369.8 618 40.0
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 5.5e-100 369.4 621 38.8
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 9.4e-100 368.6 623 38.8
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.6e-99 367.9 617 39.1
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.0e-97 360.9 512 47.3
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 7.4e-97 359.0 656 38.9
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 2.2e-96 357.5 634 40.2
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 6.3e-96 355.9 645 39.2
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 7.0e-95 352.4 505 43.6
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 7.0e-95 352.4 631 39.0
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 2.6e-94 350.5 577 42.3
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 4.7e-91 339.7 602 39.9
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 3.7e-88 330.1 410 48.5
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.5e-85 318.9 319 53.9
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 2.7e-83 313.9 555 38.4
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 6.8e-82 309.3 334 53.6
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.6e-81 307.4 495 43.8
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 7.5e-81 305.8 254 59.1
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.8e-79 301.2 501 40.5
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 4.0e-74 283.5 266 59.0
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 1.7e-72 278.1 244 62.3
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.1e-71 275.4 388 48.2
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 3.3e-68 263.8 385 45.2
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 3.7e-64 250.4 524 34.7
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.0e-63 246.1 378 45.8
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.3e-56 225.3 492 33.5
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 4.9e-56 223.4 397 39.8
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-55 221.9 252 54.0
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 9.2e-55 219.2 503 35.8
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 3.3e-52 210.7 434 34.3
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.6e-51 208.4 427 37.5
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.9e-48 197.6 170 60.0
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.4e-47 195.3 204 50.0
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 1.4e-47 195.3 623 28.4
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.6e-45 186.4 413 38.0
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 4.3e-44 183.7 573 29.8
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.3e-37 162.2 232 42.7
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.4e-32 142.9 269 43.9
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 3.9e-29 134.0 381 31.0
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.4e-25 120.9 95 65.3
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 4.5e-25 120.6 263 39.2
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 3.0e-21 107.8 110 55.5
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 8.7e-21 106.3 218 35.3
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 2.5e-20 104.8 259 32.8
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 4.3e-20 104.0 267 37.1
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 4.5e-17 94.0 238 37.4
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 4.9e-16 90.5 289 30.8
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.9e-15 88.6 93 46.2
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 2.1e-14 85.1 251 31.5
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 2.7e-14 84.7 206 39.3
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.5e-14 84.3 249 33.7
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 3.5e-14 84.3 83 53.0
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 1.3e-11 75.9 90 47.8
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 1.4e-10 72.4 289 25.3
GSVIVG01022517001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.2e-08 65.1 65 44.6
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 7.1e-07 60.1 44 59.1
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 6.0e-06 57.0 72 52.8


User provided reference genes

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