Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 1.4e-184 649.4 330 100.0
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.1e-126 455.7 326 70.9
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.7e-124 449.9 326 69.9
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 8.7e-113 411.0 326 61.7
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 8.1e-111 404.4 326 60.7
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 3.4e-109 399.1 326 60.7
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 4.5e-109 398.7 326 61.3
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 4.5e-109 398.7 326 60.7
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.9e-108 396.0 335 59.7
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 2.9e-108 396.0 326 60.7
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.4e-107 393.7 326 60.7
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.9e-107 393.3 327 59.3
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 3.9e-105 385.6 326 60.4
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 6.7e-105 384.8 326 60.4
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 5.6e-104 381.7 326 58.9
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 5.6e-104 381.7 327 59.3
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 7.4e-104 381.3 326 59.5
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 9.6e-104 380.9 326 59.2
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 1.6e-103 380.2 326 60.1
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 1.6e-103 380.2 326 61.3
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 2.1e-103 379.8 342 58.8
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 3.7e-103 379.0 326 60.1
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.4e-102 377.1 326 59.8
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.8e-102 376.7 326 57.4
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.0e-102 375.6 326 59.5
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 9.0e-102 374.4 326 58.3
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 9.0e-102 374.4 326 59.2
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 9.0e-102 374.4 326 58.0
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 9.0e-102 374.4 326 59.2
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.2e-101 374.0 326 58.6
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 3.8e-100 369.0 326 58.0
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 9.3e-99 364.4 327 57.5
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 9.3e-99 364.4 327 57.5
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 9.3e-99 364.4 326 57.4
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.2e-98 364.0 327 56.6
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 1.6e-98 363.6 327 57.5
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.6e-98 362.1 326 57.1
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 4.6e-98 362.1 326 56.1
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 6.0e-98 361.7 326 55.2
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 7.9e-98 361.3 326 56.7
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 7.9e-98 361.3 326 57.4
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.0e-97 360.9 326 56.7
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 1.3e-97 360.5 327 56.0
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 2.3e-97 359.8 327 56.6
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 3.0e-97 359.4 327 56.6
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 3.0e-97 359.4 326 56.4
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 3.0e-97 359.4 326 56.7
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 3.9e-97 359.0 326 55.2
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 5.1e-97 358.6 327 56.6
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.1e-97 358.6 326 56.4
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 8.7e-97 357.8 327 56.9
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 1.1e-96 357.5 326 55.8
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.5e-96 357.1 327 56.9
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.5e-96 357.1 327 56.9
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 1.9e-96 356.7 299 59.9
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 2.5e-96 356.3 313 59.7
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.5e-96 356.3 326 55.2
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 3.3e-96 355.9 326 54.9
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 4.3e-96 355.5 327 56.6
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 4.3e-96 355.5 327 56.0
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 4.3e-96 355.5 327 56.6
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 5.7e-96 355.1 326 55.2
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 9.6e-96 354.4 327 56.0
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 1.3e-95 354.0 330 55.5
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 1.1e-94 350.9 326 54.0
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.1e-94 350.9 360 52.2
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.8e-94 350.1 327 55.0
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.8e-94 350.1 360 53.1
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 2.4e-94 349.7 326 53.1
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 3.1e-94 349.4 327 54.7
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 4.0e-94 349.0 326 55.2
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 5.3e-94 348.6 326 54.3
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.2e-93 347.4 326 53.7
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 2.6e-93 346.3 326 55.8
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 2.6e-93 346.3 326 55.5
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 2.6e-93 346.3 310 57.4
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.6e-93 346.3 326 57.4
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 3.4e-93 345.9 373 50.4
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.3e-92 344.0 327 54.4
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 2.9e-92 342.8 326 52.5
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 2.9e-92 342.8 326 53.4
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.0e-92 342.0 380 51.6
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 1.1e-91 340.9 326 53.1
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 7.1e-91 338.2 337 54.6
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 6.1e-90 335.1 337 54.0
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.3e-89 334.0 327 53.8
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 2.3e-89 333.2 289 59.2
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.8e-86 323.6 326 52.1
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 2.4e-86 323.2 326 52.5
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 2.0e-85 320.1 327 51.4
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.0e-84 317.8 224 65.2
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.0e-84 315.5 288 58.0
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 7.2e-83 311.6 348 50.9
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 9.4e-83 311.2 326 51.5
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 1.8e-81 307.0 330 51.2
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 2.0e-80 303.5 297 52.9
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 2.8e-79 299.7 326 50.3
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.5e-77 293.9 278 56.5
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 2.2e-76 290.0 326 49.4
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 3.8e-76 289.3 329 48.3
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 8.8e-73 278.1 196 67.9
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 5.7e-72 275.4 328 45.1
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 2.4e-70 270.0 334 45.8
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 3.3e-64 249.6 155 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 5.7e-64 248.8 329 42.2
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 2.8e-63 246.5 328 40.5
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 8.2e-63 245.0 186 62.4
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.3e-62 242.3 191 60.7
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 3.5e-61 239.6 155 70.3
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 2.2e-60 236.9 329 40.1
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 7.2e-59 231.9 328 37.5
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 7.5e-56 221.9 329 43.5
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 1.4e-54 217.6 327 40.7
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 2.1e-50 203.8 127 73.2
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.7e-50 203.4 169 59.8
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.1e-43 181.4 200 50.5
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 3.7e-39 166.4 335 33.1
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 4.9e-39 166.0 162 48.8
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.8e-38 164.1 127 58.3
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.1e-35 154.8 144 60.4
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 8.3e-31 138.7 234 41.0
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 5.4e-30 136.0 85 69.4
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 3.5e-29 133.3 187 39.6
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 1.0e-28 131.7 341 27.6
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 1.1e-27 128.3 332 28.9
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 3.4e-24 116.7 245 33.5
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 8.3e-23 112.1 128 47.7
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 9.2e-14 82.0 60 63.3
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 1.6e-13 81.3 280 25.4
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 1.1e-11 75.1 51 74.5
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 5.6e-11 72.8 61 57.4
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 1.7e-07 61.2 66 45.5
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.4e-06 57.4 34 64.7


User provided reference genes

Program Settings