Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 1.6e-155 552.7 288 100.0
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 8.7e-93 344.4 297 67.0
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 1.4e-79 300.4 302 63.6
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 4.6e-78 295.4 296 61.5
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 4.6e-78 295.4 296 61.5
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 5.1e-77 292.0 296 61.1
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.5e-76 289.7 305 58.4
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 3.4e-73 279.3 297 59.3
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.9e-72 276.2 301 58.5
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 3.8e-72 275.8 259 64.5
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 3.8e-72 275.8 296 59.8
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 8.5e-72 274.6 301 58.1
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 1.1e-71 274.2 307 59.0
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 2.5e-71 273.1 251 63.3
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 7.2e-71 271.6 297 56.2
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 9.4e-71 271.2 298 57.7
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 2.3e-69 266.5 278 58.6
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 3.9e-69 265.8 291 56.4
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 8.8e-69 264.6 266 58.3
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 1.5e-68 263.8 293 56.7
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 4.4e-68 262.3 301 55.5
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 4.4e-68 262.3 284 57.0
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 5.7e-68 261.9 287 55.1
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 5.7e-68 261.9 295 56.6
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 5.7e-68 261.9 299 57.2
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 7.4e-68 261.5 279 58.1
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 1.3e-67 260.8 299 55.5
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 1.7e-67 260.4 289 58.5
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 4.8e-67 258.8 275 59.3
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 6.3e-67 258.5 294 57.1
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.1e-66 257.7 313 54.3
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.1e-66 257.7 271 59.8
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.4e-66 257.3 303 56.1
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 1.8e-66 256.9 293 56.0
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.8e-66 256.9 300 55.3
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.8e-66 256.9 300 55.3
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 2.4e-66 256.5 307 55.0
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 9.1e-66 254.6 301 54.5
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.6e-65 253.1 300 53.7
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.6e-65 253.1 299 55.2
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 4.5e-65 252.3 294 52.4
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 5.9e-65 251.9 291 56.7
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 1.3e-64 250.8 290 54.1
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.2e-64 250.0 301 54.2
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 2.2e-64 250.0 304 53.9
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 3.8e-64 249.2 298 56.0
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 1.9e-63 246.9 286 56.3
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.9e-63 246.9 307 53.7
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 9.4e-63 244.6 274 55.8
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 9.4e-63 244.6 295 55.9
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 1.6e-62 243.8 303 53.5
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.6e-62 243.8 246 59.3
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 4.7e-62 242.3 296 52.0
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.0e-61 241.1 252 56.0
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.0e-61 241.1 303 54.5
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 3.0e-61 239.6 296 53.4
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 3.9e-61 239.2 293 52.2
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 6.7e-61 238.4 295 52.5
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 8.8e-61 238.0 311 52.1
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 2.0e-60 236.9 299 53.8
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 2.0e-60 236.9 299 53.8
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 2.6e-60 236.5 306 51.3
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 9.7e-60 234.6 300 52.3
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.3e-59 234.2 284 53.5
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 1.3e-59 234.2 303 53.1
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 2.8e-59 233.0 311 53.1
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 2.8e-59 233.0 304 50.0
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 3.7e-59 232.6 271 55.7
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 4.8e-59 232.3 298 52.3
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 6.3e-59 231.9 306 53.6
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.1e-58 231.1 277 53.1
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.8e-58 230.3 302 50.0
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.8e-58 230.3 267 55.1
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 5.3e-58 228.8 299 51.2
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 7.0e-58 228.4 301 51.8
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 1.6e-57 227.3 301 52.8
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.0e-57 226.9 307 49.5
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 2.0e-57 226.9 299 50.2
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.6e-57 226.5 300 52.0
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 2.6e-57 226.5 301 52.2
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.5e-57 226.1 257 54.5
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 7.7e-57 224.9 272 51.1
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 5.0e-56 222.2 401 43.4
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 8.5e-56 221.5 288 54.5
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 8.5e-56 221.5 311 50.2
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 1.1e-55 221.1 293 51.5
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.5e-55 220.7 235 57.0
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 1.9e-55 220.3 293 53.2
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.9e-55 220.3 293 52.6
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 3.2e-55 219.5 299 51.5
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 7.2e-55 218.4 293 51.5
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 2.1e-54 216.9 251 53.0
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 2.1e-54 216.9 252 54.0
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 4.7e-54 215.7 297 48.5
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.0e-53 214.5 275 54.5
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 2.3e-53 213.4 305 52.5
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 3.0e-53 213.0 264 55.3
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 5.2e-53 212.2 327 48.0
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 8.8e-53 211.5 294 50.0
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.6e-52 209.9 296 48.3
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 3.7e-51 206.1 307 48.9
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 3.7e-51 206.1 271 50.9
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 1.4e-50 204.1 306 50.7
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 2.4e-50 203.4 256 50.8
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 9.1e-50 201.4 307 46.3
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 2.7e-49 199.9 272 53.3
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.1e-47 194.5 257 51.8
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 4.2e-47 192.6 292 46.9
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 4.2e-47 192.6 298 47.0
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 7.2e-47 191.8 299 47.5
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 2.7e-46 189.9 284 48.6
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 3.6e-46 189.5 292 46.2
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 2.3e-45 186.8 292 45.5
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 3.4e-44 183.0 276 48.6
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 7.5e-44 181.8 292 45.9
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 6.3e-43 178.7 163 64.4
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 8.3e-43 178.3 290 45.9
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.8e-42 177.2 288 44.8
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 2.0e-41 173.7 255 46.3
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 2.1e-38 163.7 255 44.3
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 6.8e-37 158.7 161 59.6
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 2.0e-36 157.1 273 41.4
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 7.5e-36 155.2 246 44.7
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 9.8e-36 154.8 236 45.8
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 1.7e-35 154.1 293 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 2.3e-32 143.7 282 37.6
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 4.3e-31 139.4 184 51.6
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 9.5e-31 138.3 154 57.8
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 1.4e-29 134.4 231 39.8
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 2.0e-28 130.6 291 39.2
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 7.0e-26 122.1 279 36.9
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 6.8e-21 105.5 115 59.1
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.0e-20 104.0 236 40.7
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 1.9e-18 97.4 268 34.7
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 5.6e-15 85.9 64 68.8
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 3.6e-14 83.2 67 58.2
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 4.7e-14 82.8 196 36.2
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 7.1e-10 68.9 118 40.7
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 9.2e-10 68.6 61 65.6
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.6e-09 67.8 104 42.3
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.1e-07 61.6 112 36.6
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 1.5e-07 61.2 116 39.7
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 5.6e-07 59.3 76 47.4
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 2.8e-06 57.0 100 40.0


User provided reference genes

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