Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 7.9e-118 427.2 222 100.0
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 5.9e-57 224.9 227 58.1
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 7.7e-57 224.6 208 59.6
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 8.3e-51 204.5 197 59.9
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 4.1e-42 175.6 189 56.1
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 1.1e-39 167.5 190 55.8
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 1.1e-39 167.5 190 55.8
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.3e-35 154.1 197 49.7
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 1.5e-31 140.6 179 49.2
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 8.1e-30 134.8 186 46.8
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 2.7e-25 119.8 189 43.4
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 7.8e-25 118.2 119 54.6
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 3.0e-24 116.3 119 54.6
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 5.1e-24 115.5 138 50.0
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 6.6e-24 115.2 120 53.3
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 8.6e-24 114.8 212 39.2
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 1.5e-23 114.0 154 48.7
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.5e-23 114.0 146 47.9
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 3.3e-23 112.8 95 57.9
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 5.6e-23 112.1 69 78.3
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 7.3e-23 111.7 201 43.3
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 7.3e-23 111.7 114 55.3
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 1.2e-22 110.9 77 70.1
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 1.2e-22 110.9 123 52.0
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 2.1e-22 110.2 176 42.6
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 2.1e-22 110.2 139 47.5
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 2.8e-22 109.8 71 73.2
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 4.7e-22 109.0 119 52.1
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 4.7e-22 109.0 119 52.1
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 6.2e-22 108.6 119 52.1
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 8.1e-22 108.2 149 45.6
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 8.1e-22 108.2 153 47.1
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 8.1e-22 108.2 209 42.6
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 1.4e-21 107.5 198 43.9
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.8e-21 107.1 147 46.3
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 1.8e-21 107.1 99 56.6
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 3.1e-21 106.3 135 50.4
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 5.2e-21 105.5 77 67.5
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 8.9e-21 104.8 116 50.9
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 8.9e-21 104.8 95 60.0
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 8.9e-21 104.8 186 40.9
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 1.2e-20 104.4 65 73.8
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-20 104.4 65 73.8
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-20 104.4 65 73.8
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.2e-20 104.4 65 73.8
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.2e-20 104.4 96 61.5
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 1.2e-20 104.4 141 50.4
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 1.5e-20 104.0 107 54.2
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.5e-20 104.0 90 63.3
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 1.5e-20 104.0 194 41.8
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.0e-20 103.6 87 60.9
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 2.0e-20 103.6 209 38.3
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 2.0e-20 103.6 99 56.6
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 2.6e-20 103.2 157 47.8
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 3.4e-20 102.8 91 52.7
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 3.4e-20 102.8 56 85.7
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 3.4e-20 102.8 77 68.8
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 4.4e-20 102.4 58 84.5
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 4.4e-20 102.4 156 51.3
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 5.8e-20 102.1 63 76.2
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 7.6e-20 101.7 178 42.1
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 7.6e-20 101.7 65 70.8
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 7.6e-20 101.7 65 70.8
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 9.9e-20 101.3 79 63.3
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 1.3e-19 100.9 199 40.2
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 1.3e-19 100.9 106 52.8
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 1.7e-19 100.5 72 69.4
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 1.7e-19 100.5 72 68.1
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 1.7e-19 100.5 56 82.1
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 1.7e-19 100.5 70 71.4
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 1.7e-19 100.5 51 90.2
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 2.9e-19 99.8 106 54.7
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 3.8e-19 99.4 52 86.5
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 3.8e-19 99.4 52 86.5
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 3.8e-19 99.4 107 54.2
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 3.8e-19 99.4 54 85.2
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 3.8e-19 99.4 107 53.3
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 3.8e-19 99.4 187 42.8
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 4.9e-19 99.0 147 44.2
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 6.4e-19 98.6 52 84.6
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 6.4e-19 98.6 51 88.2
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 6.4e-19 98.6 83 62.7
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 8.4e-19 98.2 141 46.8
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 8.4e-19 98.2 100 52.0
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.1e-18 97.8 99 56.6
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.1e-18 97.8 65 67.7
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.1e-18 97.8 112 51.8
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 1.1e-18 97.8 164 42.1
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 1.1e-18 97.8 163 42.3
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 1.1e-18 97.8 51 88.2
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 1.1e-18 97.8 128 50.8
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.1e-18 97.8 82 58.5
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 1.9e-18 97.1 108 52.8
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 1.9e-18 97.1 82 61.0
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 2.4e-18 96.7 132 46.2
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 2.4e-18 96.7 65 73.8
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 3.2e-18 96.3 142 45.1
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 4.2e-18 95.9 88 51.1
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 5.4e-18 95.5 108 51.9
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 5.4e-18 95.5 108 51.9
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 5.4e-18 95.5 208 37.5
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 5.4e-18 95.5 187 39.6
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 7.1e-18 95.1 158 39.2
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 7.1e-18 95.1 167 41.3
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.2e-17 94.4 120 50.0
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.2e-17 94.4 120 50.0
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.2e-17 94.4 116 46.6
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 1.6e-17 94.0 177 42.4
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 1.6e-17 94.0 163 41.7
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.1e-17 93.6 88 50.0
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 2.1e-17 93.6 163 40.5
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 2.7e-17 93.2 53 81.1
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 4.6e-17 92.4 159 42.1
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 1.7e-16 90.5 136 44.1
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 6.6e-16 88.6 162 42.6
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 6.6e-16 88.6 129 45.0
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 2.5e-15 86.7 168 35.1
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 2.5e-15 86.7 158 38.0
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 3.3e-15 86.3 63 66.7
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 7.3e-15 85.1 53 75.5
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 2.1e-14 83.6 126 48.4
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.8e-14 83.2 104 48.1
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 3.6e-14 82.8 84 58.3
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.6e-14 82.8 107 44.9
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.8e-13 80.5 57 59.6
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 4.5e-12 75.9 52 61.5
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 9.9e-12 74.7 84 46.4
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.9e-11 73.2 182 36.3
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 4.9e-11 72.4 127 33.1
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 8.4e-11 71.6 82 53.7
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 5.4e-10 68.9 79 48.1
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 7.1e-10 68.6 46 65.2
Oeu021232.1 Olea europaea HOM05D005195 ORTHO05D006088 7.9e-09 65.1 156 36.5
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 6.7e-08 62.0 118 37.3
Zm00001eb382840 Zea mays HOM05D003596 ORTHO05D004256 1.6e-06 57.4 46 60.9
SEGI_31523 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 2.1e-06 57.0 103 33.0
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 2.8e-06 56.6 48 47.9


User provided reference genes

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