Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 1.0e-174 616.7 325 100.0
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 4.6e-143 511.5 315 85.4
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 1.3e-129 466.8 325 76.6
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.5e-128 463.4 315 79.0
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 5.5e-128 461.5 327 75.8
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.7e-127 459.1 323 75.9
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 6.7e-126 454.5 322 76.1
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.3e-125 452.2 323 74.9
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.5e-125 451.1 322 74.8
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 3.7e-124 448.7 323 74.6
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.8e-124 448.4 321 75.1
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.6e-122 443.4 326 73.0
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 2.0e-122 443.0 321 73.5
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.9e-122 441.4 320 74.1
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.3e-121 440.3 321 73.2
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 5.0e-121 438.3 323 73.1
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.1e-120 437.2 316 75.3
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 2.5e-120 436.0 317 74.1
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 4.2e-120 435.3 317 73.5
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 5.5e-120 434.9 316 75.9
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 5.5e-120 434.9 321 72.3
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 4.7e-119 431.8 319 73.7
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 8.0e-119 431.0 316 74.7
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.4e-118 430.3 316 75.3
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.8e-118 429.9 317 72.9
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.8e-118 429.9 317 74.1
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 3.0e-118 429.1 321 71.3
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 3.0e-118 429.1 326 74.8
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.5e-117 426.8 315 73.3
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 2.0e-117 426.4 318 72.3
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 4.4e-117 425.2 322 73.3
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 4.4e-117 425.2 322 73.3
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.3e-116 423.7 314 73.2
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.3e-116 423.7 314 73.2
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.2e-116 422.9 312 74.0
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 3.7e-116 422.2 321 73.8
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 4.8e-116 421.8 320 72.8
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 6.3e-116 421.4 321 72.0
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.1e-115 420.6 311 73.3
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.1e-115 420.6 314 73.2
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.4e-115 420.2 314 72.9
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 4.1e-115 418.7 314 73.2
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 3.5e-114 415.6 319 70.8
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 5.9e-114 414.8 323 70.3
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.0e-113 414.1 319 69.9
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.0e-113 414.1 326 71.2
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.3e-113 413.7 319 70.2
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.8e-113 412.1 324 70.1
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 6.5e-113 411.4 311 73.0
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.5e-112 410.2 318 71.4
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.5e-112 410.2 319 69.0
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 4.2e-112 408.7 317 70.3
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 4.2e-112 408.7 309 73.8
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 5.5e-112 408.3 319 70.8
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.0e-110 404.1 311 72.0
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.8e-110 403.3 317 69.7
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 3.0e-110 402.5 323 70.3
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 8.8e-110 401.0 322 68.6
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 7.5e-109 397.9 319 68.0
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.4e-107 393.7 327 67.6
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 2.4e-107 392.9 312 69.2
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 9.2e-107 391.0 310 70.0
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 2.7e-106 389.4 311 70.7
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 3.8e-105 385.6 314 69.4
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 5.0e-105 385.2 308 69.2
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 8.6e-105 384.4 326 67.2
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 2.5e-104 382.9 310 69.0
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.3e-104 382.5 315 68.9
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 4.3e-104 382.1 315 69.2
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 5.6e-104 381.7 315 68.3
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 5.6e-104 381.7 314 69.7
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 7.3e-104 381.3 311 67.8
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 7.3e-104 381.3 305 69.8
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.8e-103 379.4 326 66.0
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 2.8e-103 379.4 326 65.6
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 2.8e-103 379.4 315 68.3
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 8.0e-103 377.9 326 66.9
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.4e-102 377.1 308 68.5
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.4e-102 377.1 322 67.7
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.8e-102 376.7 327 63.9
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.8e-102 376.7 315 67.0
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 2.3e-102 376.3 328 66.5
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.0e-102 375.9 319 67.1
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 5.2e-102 375.2 322 67.7
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 1.2e-101 374.0 316 68.0
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.5e-101 373.6 315 66.3
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 3.4e-101 372.5 307 68.4
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.3e-100 370.5 305 69.5
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.3e-100 370.5 313 66.8
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 2.2e-100 369.8 245 78.4
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.2e-100 369.8 319 64.9
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 3.7e-100 369.0 306 68.0
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 6.4e-100 368.2 319 65.5
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 8.3e-100 367.9 316 65.8
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 8.3e-100 367.9 316 65.8
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.2e-99 365.9 310 67.1
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 9.2e-99 364.4 312 66.3
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 9.2e-99 364.4 306 66.3
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.6e-98 363.6 310 66.5
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 5.9e-98 361.7 315 65.1
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 7.8e-98 361.3 316 65.5
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.3e-97 360.5 326 64.7
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 1.7e-97 360.1 326 62.9
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 5.0e-97 358.6 310 67.1
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 5.0e-97 358.6 319 63.3
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 8.6e-97 357.8 297 67.3
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.1e-96 357.5 299 66.6
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 2.5e-96 356.3 326 62.6
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.1e-95 353.2 326 62.0
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.7e-95 352.1 333 62.2
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.4e-94 350.5 311 65.0
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.4e-94 350.5 316 63.9
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 5.2e-94 348.6 316 64.6
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 2.0e-93 346.7 297 66.7
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.3e-92 344.0 303 66.7
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 4.9e-92 342.0 319 63.0
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 3.9e-89 332.4 242 74.0
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 2.5e-88 329.7 325 59.1
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.3e-76 290.8 222 71.2
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.3e-65 253.4 316 51.3
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 5.1e-65 252.3 316 51.6
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 9.9e-61 238.0 213 66.7
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 2.2e-60 236.9 239 58.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.6e-58 230.7 299 49.2
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 2.7e-58 229.9 232 60.3
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 4.3e-56 222.6 304 46.1
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.0e-54 216.1 202 60.9
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 2.0e-53 213.8 299 47.5
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 5.6e-48 195.7 335 41.2
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.3e-47 194.5 303 40.3
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 4.0e-46 189.5 342 40.6
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 5.8e-45 185.7 127 74.0
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 2.2e-44 183.7 278 46.0
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.5e-43 180.3 128 72.7
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.5e-40 170.2 301 39.5
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.6e-34 149.8 315 37.1
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 3.7e-31 139.8 129 65.1
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 9.1e-30 135.2 93 74.2
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.7e-28 131.0 204 41.2
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 1.1e-27 128.3 212 41.0
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 6.7e-25 119.0 102 60.8
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 1.5e-24 117.9 139 50.4
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 2.2e-23 114.0 164 42.1
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 9.1e-22 108.6 86 69.8
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.0e-21 107.5 168 48.2
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 2.1e-18 97.4 169 40.2
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 2.1e-18 97.4 169 40.2
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 2.1e-18 97.4 169 40.2
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 4.7e-18 96.3 63 79.4
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 8.8e-17 92.0 85 60.0
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 5.7e-16 89.4 70 65.7
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 6.3e-15 85.9 94 56.4
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.8e-14 84.3 76 55.3
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 2.2e-12 77.4 70 57.1
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 4.7e-10 69.7 102 40.2
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.4e-08 63.2 95 41.1
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.2e-07 60.8 59 61.0
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 4.1e-06 56.6 40 70.0
HanXRQChr15g0476361 Helianthus annuus HOM05D000073 ORTHO05D000033 9.1e-06 55.5 35 65.7


User provided reference genes

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