Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 3.1e-60 235.0 120 100.0
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 8.5e-42 173.7 119 77.3
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 7.2e-41 170.6 118 72.9
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 9.4e-41 170.2 112 79.5
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 1.2e-40 169.9 118 72.9
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.1e-40 169.1 116 79.3
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.7e-40 168.7 119 73.1
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 2.7e-40 168.7 123 74.8
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 3.6e-40 168.3 118 76.3
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.6e-40 168.3 119 77.3
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 4.7e-40 167.9 125 73.6
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 6.1e-40 167.5 114 73.7
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 6.1e-40 167.5 118 72.0
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.0e-39 166.8 115 76.5
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.4e-39 166.4 115 75.7
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.4e-39 166.4 115 75.7
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.8e-39 166.0 126 69.8
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 2.3e-39 165.6 125 71.2
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.0e-39 165.2 114 74.6
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 3.9e-39 164.9 123 73.2
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 3.9e-39 164.9 123 73.2
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 3.9e-39 164.9 115 74.8
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 3.9e-39 164.9 114 73.7
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 3.9e-39 164.9 114 73.7
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 5.1e-39 164.5 119 72.3
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 5.1e-39 164.5 125 70.4
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 5.1e-39 164.5 126 72.2
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 6.7e-39 164.1 126 69.0
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 8.8e-39 163.7 116 73.3
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 8.8e-39 163.7 115 73.9
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 8.8e-39 163.7 114 75.4
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.5e-38 162.9 125 70.4
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.5e-38 162.9 115 71.3
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.5e-38 162.9 122 72.1
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 2.0e-38 162.5 121 72.7
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.0e-38 162.5 114 72.8
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 2.0e-38 162.5 117 70.9
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.6e-38 162.2 114 71.1
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 2.6e-38 162.2 115 74.8
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 3.3e-38 161.8 117 73.5
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.3e-38 161.8 124 73.4
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 4.4e-38 161.4 113 71.7
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 4.4e-38 161.4 115 72.2
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 4.4e-38 161.4 124 67.7
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 4.4e-38 161.4 124 67.7
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 4.4e-38 161.4 114 71.1
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 4.4e-38 161.4 118 71.2
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 5.7e-38 161.0 116 71.6
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.7e-38 161.0 115 72.2
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 7.4e-38 160.6 113 71.7
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 7.4e-38 160.6 119 72.3
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 9.7e-38 160.2 133 66.9
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 9.7e-38 160.2 118 71.2
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 9.7e-38 160.2 114 73.7
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 1.3e-37 159.8 133 66.2
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.3e-37 159.8 121 71.9
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.3e-37 159.8 117 72.6
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.7e-37 159.5 120 70.8
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.7e-37 159.5 115 71.3
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.7e-37 159.5 120 72.5
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.8e-37 158.7 115 70.4
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 3.7e-37 158.3 119 68.9
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 6.3e-37 157.5 118 69.5
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 8.2e-37 157.1 124 69.4
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 8.2e-37 157.1 120 70.0
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.1e-36 156.8 126 69.0
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 1.1e-36 156.8 117 68.4
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.4e-36 156.4 126 68.3
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.4e-36 156.4 119 70.6
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 1.4e-36 156.4 134 66.4
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 1.4e-36 156.4 134 66.4
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.4e-36 156.4 119 70.6
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.4e-36 156.4 115 71.3
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.8e-36 156.0 120 71.7
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.8e-36 156.0 117 72.6
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 2.4e-36 155.6 133 64.7
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 2.4e-36 155.6 133 64.7
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 2.4e-36 155.6 133 64.7
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 3.1e-36 155.2 120 70.0
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.1e-36 155.2 126 68.3
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 4.1e-36 154.8 121 68.6
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 5.3e-36 154.5 126 69.8
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 5.3e-36 154.5 126 69.8
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 9.1e-36 153.7 118 69.5
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 9.1e-36 153.7 115 71.3
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 9.1e-36 153.7 122 70.5
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 9.1e-36 153.7 114 68.4
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.2e-35 153.3 118 66.1
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.5e-35 152.9 114 71.1
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.5e-35 152.9 126 69.0
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 1.5e-35 152.9 120 68.3
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.0e-35 152.5 115 68.7
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 2.0e-35 152.5 114 70.2
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.6e-35 152.1 118 67.8
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 3.5e-35 151.8 121 71.1
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 3.5e-35 151.8 117 70.1
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 3.5e-35 151.8 88 85.2
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 4.5e-35 151.4 119 68.9
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 4.5e-35 151.4 85 89.4
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 5.9e-35 151.0 84 90.5
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 7.7e-35 150.6 91 82.4
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.0e-34 150.2 113 70.8
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.3e-34 149.8 118 67.8
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.3e-34 149.8 92 78.3
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.7e-34 149.4 119 68.9
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.2e-34 149.1 126 64.3
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 3.8e-34 148.3 85 88.2
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 3.8e-34 148.3 88 83.0
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 6.5e-34 147.5 107 72.9
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 6.5e-34 147.5 109 69.7
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 1.1e-33 146.7 88 81.8
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.1e-33 146.7 109 71.6
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.4e-33 146.4 113 70.8
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 1.9e-33 146.0 90 83.3
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.9e-33 146.0 111 69.4
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.9e-33 146.0 126 64.3
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 3.2e-33 145.2 121 68.6
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.2e-33 144.8 121 65.3
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.2e-33 144.8 121 65.3
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 4.2e-33 144.8 120 61.7
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 5.5e-33 144.4 116 64.7
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 5.5e-33 144.4 120 60.8
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 5.5e-33 144.4 120 60.8
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 5.5e-33 144.4 128 61.7
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 7.2e-33 144.1 126 60.3
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.2e-32 143.3 88 81.8
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.6e-32 142.9 120 61.7
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.1e-32 142.5 126 63.5
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.4e-31 139.8 127 62.2
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 3.0e-31 138.7 88 78.4
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 5.2e-31 137.9 86 80.2
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 5.7e-30 134.4 122 62.3
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 2.2e-29 132.5 111 64.0
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 1.8e-28 129.4 77 79.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.0e-28 127.5 121 59.5
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.3e-26 123.2 121 57.9
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 8.5e-26 120.6 115 60.9
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 1.5e-25 119.8 120 56.7
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.2e-25 118.2 69 84.1
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 2.3e-23 112.5 124 55.6
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.3e-21 104.0 80 68.8
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.1e-20 103.6 123 53.7
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.4e-20 103.2 79 67.1
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 1.6e-19 99.8 115 49.6
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 2.0e-19 99.4 104 52.9
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.8e-18 95.1 72 69.4
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.6e-16 89.7 103 52.4
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.7e-16 89.0 82 57.3
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 2.7e-16 89.0 93 51.6
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.4e-15 86.7 84 58.3
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.8e-15 86.3 83 57.8
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.2e-14 83.6 58 75.9
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.7e-13 79.7 63 66.7
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 1.3e-10 70.1 45 71.1


User provided reference genes

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