Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 1.5e-147 526.2 276 100.0
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 1.9e-89 333.2 236 73.3
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 9.9e-86 320.9 237 71.3
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 1.3e-82 310.5 251 66.5
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 2.1e-80 303.1 212 71.2
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 3.6e-80 302.4 212 70.8
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 5.2e-79 298.5 265 60.4
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 6.9e-79 298.1 248 63.3
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 9.0e-79 297.7 268 62.7
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 1.2e-78 297.4 226 67.3
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 2.9e-77 292.7 266 59.8
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 1.4e-76 290.4 228 67.1
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 5.4e-76 288.5 212 67.0
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 7.1e-76 288.1 209 67.0
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 7.1e-76 288.1 233 64.8
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 1.2e-75 287.3 210 67.1
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 1.6e-75 287.0 268 58.6
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 1.6e-75 287.0 218 68.3
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 1.6e-75 287.0 276 59.1
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 2.1e-75 286.6 234 60.7
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 4.6e-75 285.4 210 66.7
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 4.6e-75 285.4 275 57.5
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 6.0e-75 285.0 210 66.7
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 1.0e-74 284.3 216 65.7
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 1.3e-74 283.9 280 57.5
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 6.6e-74 281.6 262 59.9
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 6.6e-74 281.6 238 62.2
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.5e-73 280.4 265 59.2
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 1.5e-73 280.4 214 66.4
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 1.9e-73 280.0 260 59.2
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 5.6e-73 278.5 262 56.5
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 7.3e-73 278.1 208 66.3
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 1.3e-72 277.3 224 62.1
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 1.3e-72 277.3 274 56.9
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 2.8e-72 276.2 275 57.1
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 4.8e-72 275.4 276 56.2
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 4.8e-72 275.4 273 53.8
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 8.1e-72 274.6 273 56.4
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 3.1e-71 272.7 273 57.5
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 4.0e-71 272.3 251 59.0
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 5.3e-71 271.9 262 55.7
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 9.0e-71 271.2 212 64.6
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 9.0e-71 271.2 214 64.5
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 9.0e-71 271.2 206 65.0
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 1.2e-70 270.8 266 56.4
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 1.5e-70 270.4 265 56.6
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 3.4e-70 269.2 257 56.8
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 3.4e-70 269.2 273 53.5
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 3.4e-70 269.2 273 53.5
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 3.4e-70 269.2 261 55.9
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 4.5e-70 268.9 255 56.9
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 4.5e-70 268.9 214 63.1
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 5.8e-70 268.5 258 57.0
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.8e-70 268.5 261 55.9
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 5.8e-70 268.5 204 66.7
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 1.7e-69 266.9 255 56.5
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 2.9e-69 266.2 183 73.8
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 3.8e-69 265.8 211 64.0
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 4.9e-69 265.4 259 56.8
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 1.4e-68 263.8 264 53.8
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 2.4e-68 263.1 268 54.1
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 3.2e-68 262.7 233 59.2
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 4.2e-68 262.3 275 53.5
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 4.2e-68 262.3 265 55.5
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 9.3e-68 261.2 277 56.0
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 9.3e-68 261.2 220 61.8
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 1.2e-67 260.8 263 55.5
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 6.0e-67 258.5 243 56.8
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 1.8e-66 256.9 212 60.4
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 3.0e-66 256.1 205 62.0
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 8.7e-66 254.6 221 59.7
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 2.5e-65 253.1 214 60.3
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 3.3e-65 252.7 202 65.3
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.3e-64 250.8 181 70.2
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 1.3e-64 250.8 243 56.4
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 6.2e-64 248.4 259 56.0
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 1.4e-63 247.3 268 51.5
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 1.4e-63 247.3 230 57.0
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 3.1e-63 246.1 245 53.1
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 9.0e-63 244.6 219 58.0
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 7.6e-62 241.5 176 71.6
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 9.9e-62 241.1 180 72.2
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 1.7e-61 240.4 183 66.1
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 2.2e-61 240.0 290 50.7
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 2.9e-61 239.6 179 69.3
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 4.9e-61 238.8 179 68.2
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 2.4e-60 236.5 202 59.9
Solyc05g053880.4 Solanum lycopersicum HOM05D006222 ORTHO05D007677 7.1e-60 235.0 182 70.3
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 4.6e-59 232.3 186 69.4
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 5.1e-58 228.8 189 60.3
Lsat_1_v5_gn_2_38021 Lactuca sativa HOM05D006222 ORTHO05D007677 5.6e-57 225.3 233 57.9
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 2.4e-55 219.9 275 48.4
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 9.0e-55 218.0 259 48.3
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 1.2e-54 217.6 235 49.8
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 7.6e-54 214.9 274 48.2
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 7.6e-54 214.9 271 47.6
SMO331G0016 Selaginella moellendorffii HOM05D006222 ORTHO05D007677 1.3e-48 197.6 244 45.9
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 3.8e-45 186.0 203 50.7
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 3.2e-44 183.0 178 55.1
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 7.9e-43 178.3 249 47.0
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 8.8e-42 174.9 221 46.2
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 3.3e-41 172.9 127 70.9
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 4.1e-39 166.0 173 57.2
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 2.6e-38 163.3 233 48.9
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.2e-37 160.2 134 60.4
Pp3c6_17250 Physcomitrium patens HOM05D006222 ORTHO05D007677 4.2e-36 156.0 244 39.8
Mapoly0037s0098 Marchantia polymorpha HOM05D006222 ORTHO05D007677 9.4e-36 154.8 262 36.3
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 4.7e-35 152.5 314 39.2
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 3.0e-34 149.8 221 40.7
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 3.0e-34 149.8 93 74.2
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 6.7e-34 148.7 93 74.2
CBR_g19109 Chara braunii HOM05D006222 ORTHO05D007677 5.7e-33 145.6 194 42.3
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 9.7e-33 144.8 93 73.1
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.7e-32 144.1 178 46.6
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 4.1e-31 139.4 97 68.0
Eucgr.L00544 Eucalyptus grandis HOM05D006222 ORTHO05D007677 7.7e-30 135.2 122 57.4
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 3.0e-26 123.2 148 51.4
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 1.7e-24 117.5 172 46.5
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 3.1e-23 113.2 82 62.2
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 4.5e-22 109.4 95 58.9
Actinidia27187 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.0e-21 108.2 192 45.8
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.4e-18 97.8 61 70.5
AagrBONN_evm.TU.Sc2ySwM_362.227 Anthoceros agrestis HOM05D006222 ORTHO05D007677 5.2e-10 69.3 206 33.0
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 2.6e-09 67.0 52 57.7
SEGI_30148 Sequoiadendron giganteum HOM05D006222 ORTHO05D007677 1.8e-07 60.8 40 70.0


User provided reference genes

Program Settings