Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 6.8e-158 560.8 333 100.0
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 6.6e-76 288.5 441 48.8
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 8.9e-73 278.1 445 44.9
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 1.5e-72 277.3 375 50.1
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 4.4e-72 275.8 440 48.6
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 5.7e-72 275.4 435 48.7
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.2e-71 273.5 438 48.6
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.4e-70 270.0 367 46.3
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 9.2e-70 268.1 444 43.0
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 1.2e-69 267.7 448 40.8
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 2.0e-69 266.9 454 48.0
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 3.5e-69 266.2 445 48.1
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 5.9e-69 265.4 444 47.7
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 5.9e-69 265.4 438 49.8
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.9e-67 260.4 440 48.9
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.9e-67 260.4 440 48.9
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 2.5e-67 260.0 443 46.3
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 2.5e-67 260.0 440 46.4
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 2.5e-67 260.0 446 45.7
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 3.3e-67 259.6 438 48.6
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.3e-67 259.6 443 44.7
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 7.3e-67 258.5 448 46.7
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-66 257.7 448 43.5
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.6e-66 257.3 442 44.1
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 4.7e-66 255.8 449 46.1
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 8.0e-66 255.0 434 46.1
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.0e-65 254.6 439 46.7
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 2.3e-65 253.4 459 41.0
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.3e-65 253.4 447 47.0
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 2.3e-65 253.4 442 44.6
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 3.1e-65 253.1 450 38.9
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 4.0e-65 252.7 441 45.6
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 6.8e-65 251.9 390 49.5
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 6.8e-65 251.9 447 45.4
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-64 251.1 448 42.4
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-64 251.1 448 42.4
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 1.5e-64 250.8 444 43.9
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 2.0e-64 250.4 444 45.9
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.7e-63 247.3 447 45.0
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 3.7e-63 246.1 438 43.6
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 4.9e-63 245.7 386 50.5
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 6.4e-63 245.4 445 45.4
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 8.3e-63 245.0 450 45.8
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.9e-62 243.8 444 44.8
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 3.2e-62 243.0 440 38.6
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 7.0e-62 241.9 437 43.5
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 1.6e-61 240.7 444 44.6
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 7.8e-61 238.4 462 40.3
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 1.7e-60 237.3 347 42.9
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 8.6e-60 235.0 447 46.8
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.5e-59 233.4 439 46.2
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 3.3e-59 233.0 446 46.0
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.3e-59 232.6 439 46.2
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 9.5e-59 231.5 397 47.1
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 2.1e-58 230.3 441 45.1
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 3.6e-58 229.6 445 46.5
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.1e-57 228.0 398 40.2
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.8e-57 227.3 390 51.0
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 1.8e-57 227.3 456 42.5
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 2.3e-57 226.9 447 42.1
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 3.4e-56 223.0 441 45.4
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.1e-54 218.0 442 43.9
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.4e-54 217.6 449 44.3
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.6e-53 214.2 393 42.2
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.0e-53 212.2 441 45.6
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.7e-52 210.7 406 44.8
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 5.1e-52 209.1 460 42.8
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.5e-51 206.8 435 41.1
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 6.2e-50 202.2 460 37.2
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.2e-48 198.0 124 73.4
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.2e-48 198.0 124 73.4
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 1.5e-48 197.6 333 38.7
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 4.4e-48 196.1 419 45.3
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.1e-46 191.4 147 61.9
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.1e-45 187.2 429 40.8
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.7e-45 186.8 429 42.2
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.8e-41 174.1 123 63.4
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 2.4e-41 173.7 365 44.1
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 6.8e-41 172.2 121 63.6
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 5.8e-40 169.1 123 61.0
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.4e-38 164.5 115 64.3
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.9e-38 164.1 115 63.5
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 3.2e-38 163.3 141 54.6
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 4.2e-38 162.9 145 53.1
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 4.2e-38 162.9 121 59.5
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 7.1e-38 162.2 144 52.8
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.2e-37 161.4 121 58.7
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.2e-37 161.4 150 53.3
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 1.2e-37 161.4 144 52.8
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.6e-37 161.0 141 54.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.7e-37 160.2 150 52.7
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.7e-37 160.2 150 52.7
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 2.7e-37 160.2 115 61.7
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.5e-37 159.8 147 50.3
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 3.5e-37 159.8 128 55.5
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 4.6e-37 159.5 115 61.7
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.0e-36 158.3 114 60.5
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.0e-36 158.3 114 60.5
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 1.0e-36 158.3 115 60.9
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.0e-36 158.3 142 54.2
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.0e-36 158.3 116 60.3
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.0e-36 158.3 208 45.7
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.3e-36 157.9 213 45.1
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.7e-36 157.5 139 53.2
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.7e-36 157.5 136 52.2
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.7e-36 157.5 141 53.9
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 1.7e-36 157.5 141 53.9
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.3e-36 157.1 115 60.9
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 3.0e-36 156.8 115 60.9
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 3.0e-36 156.8 213 43.7
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 3.9e-36 156.4 230 42.2
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 3.9e-36 156.4 115 59.1
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 3.9e-36 156.4 115 60.0
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 5.1e-36 156.0 115 60.0
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 6.6e-36 155.6 202 44.6
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 6.6e-36 155.6 115 61.7
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 6.6e-36 155.6 115 60.0
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 8.7e-36 155.2 115 59.1
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 1.1e-35 154.8 224 46.0
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-35 154.8 141 53.2
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 1.1e-35 154.8 115 59.1
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.5e-35 154.5 115 59.1
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.9e-35 154.1 115 59.1
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 3.3e-35 153.3 115 58.3
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 3.3e-35 153.3 115 60.9
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.3e-35 153.3 223 42.6
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 3.3e-35 153.3 223 42.6
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 4.3e-35 152.9 124 56.5
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 4.3e-35 152.9 115 60.0
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 5.6e-35 152.5 142 49.3
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 7.3e-35 152.1 115 58.3
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 7.3e-35 152.1 115 58.3
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 7.3e-35 152.1 115 59.1
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 7.3e-35 152.1 115 56.5
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 9.6e-35 151.8 115 57.4
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 9.6e-35 151.8 115 59.1
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.3e-34 151.4 142 50.0
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.6e-34 151.0 115 59.1
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 2.1e-34 150.6 220 44.5
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 2.8e-34 150.2 302 38.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.8e-34 150.2 222 42.8
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.4e-33 147.9 237 38.8
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.8e-33 147.5 129 51.9
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.8e-33 147.5 210 40.0
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 2.4e-33 147.1 107 60.7
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.0e-33 146.4 226 40.7
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 9.0e-33 145.2 128 52.3
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 9.0e-33 145.2 375 40.8
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.2e-32 144.8 202 41.1
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 9.9e-32 141.7 225 38.2
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 9.9e-32 141.7 142 47.2
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 4.6e-29 132.9 438 38.4
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.8e-20 104.4 450 34.2
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 6.7e-20 102.4 220 35.0
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 6.7e-20 102.4 220 35.0
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 6.0e-13 79.3 81 55.6
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 4.1e-09 66.6 48 62.5
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.2e-08 65.1 58 53.4
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.0e-07 62.0 358 30.4
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 2.2e-07 60.8 77 45.5
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 5.0e-07 59.7 140 35.7
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 8.4e-07 58.9 45 60.0
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 3.2e-06 57.0 51 51.0


User provided reference genes

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